RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 CCDC50Q8IVM0 306 aa13.07□□□□□ -0.32
HMGB1-206ENST00000405805 LINC00116Q8NCU8 138 aa13.07□□□□□ -0.32
HMGB1-206ENST00000405805 GSTO1P78417 241 aa13.06□□□□□ -0.32
HMGB1-206ENST00000405805 PRR16Q569H4 304 aa13.06□□□□□ -0.32
HMGB1-206ENST00000405805 CCNI2Q6ZMN8 369 aaPredicted RBP13.06□□□□□ -0.32
HMGB1-206ENST00000405805 TRIM9Q9C026 710 aa13.06□□□□□ -0.32
HMGB1-206ENST00000405805 BSDC1Q9NW68 430 aaPredicted RBP13.06□□□□□ -0.32
HMGB1-206ENST00000405805 RCCD1A6NED2 376 aa13.06□□□□□ -0.32
HMGB1-206ENST00000405805 DDX39AO00148 427 aaKnown RBP13.06□□□□□ -0.32
HMGB1-206ENST00000405805 PDE2AO00408 941 aaPredicted RBP13.06□□□□□ -0.32
HMGB1-206ENST00000405805 CARSP49589 748 aaKnown RBP13.06□□□□□ -0.32
HMGB1-206ENST00000405805 VPS41P49754 854 aa13.06□□□□□ -0.32
HMGB1-206ENST00000405805 MAN2A1Q16706 1144 aa13.06□□□□□ -0.32
HMGB1-206ENST00000405805 DDX42Q86XP3 938 aaKnown RBP eCLIP13.06□□□□□ -0.32
HMGB1-206ENST00000405805 ARL10Q8N8L6 244 aa13.06□□□□□ -0.32
HMGB1-206ENST00000405805 ANKS4BQ8N8V4 417 aa13.06□□□□□ -0.32
HMGB1-206ENST00000405805 MORC4Q8TE76 937 aa13.06□□□□□ -0.32
HMGB1-206ENST00000405805 ARL8AQ96BM9 186 aa13.06□□□□□ -0.32
HMGB1-206ENST00000405805 KCNK9Q9NPC2 374 aa13.06□□□□□ -0.32
HMGB1-206ENST00000405805 RBM12Q9NTZ6 932 aaKnown RBP13.06□□□□□ -0.32
HMGB1-206ENST00000405805 CTDP1Q9Y5B0 961 aaPredicted RBP13.06□□□□□ -0.32
HMGB1-206ENST00000405805 DCCP43146 1447 aa13.06□□□□□ -0.32
HMGB1-206ENST00000405805 FAM196BA6NMK8 535 aa13.06□□□□□ -0.32
HMGB1-206ENST00000405805 USP17L5A8MUK1 530 aa13.06□□□□□ -0.32
HMGB1-206ENST00000405805 SLCO1A2P46721 670 aa13.06□□□□□ -0.32
HMGB1-206ENST00000405805 EPHB4P54760 987 aa13.06□□□□□ -0.32
HMGB1-206ENST00000405805 RASIP1Q5U651 963 aa13.06□□□□□ -0.32
HMGB1-206ENST00000405805 TSC22D3Q99576 134 aa13.06□□□□□ -0.32
HMGB1-206ENST00000405805 ADAMTS3O15072 1205 aa13.06□□□□□ -0.32
HMGB1-206ENST00000405805 MRPL12P52815 198 aaKnown RBP13.06□□□□□ -0.32
HMGB1-206ENST00000405805 UBXN2AP68543 259 aa13.06□□□□□ -0.32
HMGB1-206ENST00000405805 LACTBP83111 547 aaPredicted RBP13.06□□□□□ -0.32
HMGB1-206ENST00000405805 SEC23AQ15436 765 aa13.06□□□□□ -0.32
HMGB1-206ENST00000405805 MUM1L1Q5H9M0 696 aa13.06□□□□□ -0.32
HMGB1-206ENST00000405805 SPATA31A1Q5TZJ5 1347 aa13.05□□□□□ -0.32
HMGB1-206ENST00000405805 CNTNAP5Q8WYK1 1306 aa13.05□□□□□ -0.32
HMGB1-206ENST00000405805 E9PMD0 336 aa13.05□□□□□ -0.32
HMGB1-206ENST00000405805 NR2F2P24468 414 aa13.05□□□□□ -0.32
HMGB1-206ENST00000405805 CYP2J2P51589 502 aa13.05□□□□□ -0.32
HMGB1-206ENST00000405805 MYO1EQ12965 1108 aa13.05□□□□□ -0.32
HMGB1-206ENST00000405805 ARL6IP4Q66PJ3 421 aaKnown RBP13.05□□□□□ -0.32
HMGB1-206ENST00000405805 DDX47Q9H0S4 455 aaKnown RBP13.05□□□□□ -0.32
HMGB1-206ENST00000405805 ATP8A1Q9Y2Q0 1164 aa13.05□□□□□ -0.32
HMGB1-206ENST00000405805 NPHP3-ACAD11A0A0J9YXS1 232 aa13.05□□□□□ -0.32
HMGB1-206ENST00000405805 IRAK1P51617 712 aa13.05□□□□□ -0.32
HMGB1-206ENST00000405805 HIBCHQ6NVY1 386 aaPredicted RBP13.05□□□□□ -0.32
HMGB1-206ENST00000405805 EGFL6Q8IUX8 553 aa13.05□□□□□ -0.32
HMGB1-206ENST00000405805 CEP120Q8N960 986 aa13.05□□□□□ -0.32
HMGB1-206ENST00000405805 PCDHA6Q9UN73 950 aa13.05□□□□□ -0.32
HMGB1-206ENST00000405805 PCDHA8Q9Y5H6 950 aa13.05□□□□□ -0.32
HMGB1-206ENST00000405805 LRRD1A4D1F6 860 aa13.05□□□□□ -0.32
HMGB1-206ENST00000405805 AP1G2O75843 785 aa13.05□□□□□ -0.32
HMGB1-206ENST00000405805 SLC8A1P32418 973 aa13.05□□□□□ -0.32
HMGB1-206ENST00000405805 CCDC38Q502W7 563 aa13.05□□□□□ -0.32
HMGB1-206ENST00000405805 TXNRD3Q86VQ6 643 aa13.05□□□□□ -0.32
HMGB1-206ENST00000405805 DDX25Q9UHL0 483 aaKnown RBP13.05□□□□□ -0.32
HMGB1-206ENST00000405805 SNX12Q9UMY4 172 aa13.05□□□□□ -0.32
HMGB1-206ENST00000405805 SPDYE3A6NKU9 549 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 GOLGA8KD6RF30 607 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 FAM13AO94988 1023 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 CA8P35219 290 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 FNBP4Q8N3X1 1017 aaPredicted RBP13.04□□□□□ -0.32
HMGB1-206ENST00000405805 FBXL16Q8N461 479 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 ARFGAP2Q8N6H7 521 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 VGLL2Q8N8G2 317 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 NSUN4Q96CB9 384 aaKnown RBP13.04□□□□□ -0.32
HMGB1-206ENST00000405805 LRRC27Q9C0I9 530 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 PNPLA7Q6ZV29 1317 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 USP17L15C9J2P7 530 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 USP17L13C9JLJ4 530 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 USP17L11C9JVI0 530 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 USP17L18D6R9N7 530 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 USP17L22D6RA61 530 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 USP17L17D6RBQ6 530 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 USP17L19D6RCP7 530 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 USP17L20D6RJB6 530 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 LRRN2O75325 713 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 NR1D1P20393 614 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 USP17L24Q0WX57 530 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 CAPRIN2Q6IMN6 1127 aaKnown RBP13.04□□□□□ -0.32
HMGB1-206ENST00000405805 USP17L6PQ6QN14 398 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 ARHGEF1Q92888 912 aaKnown RBP13.04□□□□□ -0.32
HMGB1-206ENST00000405805 BRIP1Q9BX63 1249 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 ZC3H12CQ9C0D7 883 aaKnown RBP13.04□□□□□ -0.32
HMGB1-206ENST00000405805 ARMCX3Q9UH62 379 aaPredicted RBP13.04□□□□□ -0.32
HMGB1-206ENST00000405805 JCADQ9P266 1359 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.04□□□□□ -0.32
HMGB1-206ENST00000405805 FGFR2P21802 821 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 FKBP3Q00688 224 aaKnown RBP13.04□□□□□ -0.32
HMGB1-206ENST00000405805 SF3B2Q13435 895 aaKnown RBP13.04□□□□□ -0.32
HMGB1-206ENST00000405805 IFI16Q16666 785 aaKnown RBP13.04□□□□□ -0.32
HMGB1-206ENST00000405805 PDXDC2PQ6P474 469 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 MSANTD4Q8NCY6 345 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 DDX27Q96GQ7 796 aaKnown RBP13.04□□□□□ -0.32
HMGB1-206ENST00000405805 PSTPIP2Q9H939 334 aa13.04□□□□□ -0.32
HMGB1-206ENST00000405805 NOVA2Q9UNW9 492 aaKnown RBP13.04□□□□□ -0.32
HMGB1-206ENST00000405805 MYO1FO00160 1098 aa13.03□□□□□ -0.32
HMGB1-206ENST00000405805 PRPF6O94906 941 aaKnown RBP13.03□□□□□ -0.32
HMGB1-206ENST00000405805 SRGNP10124 158 aa13.03□□□□□ -0.32
HMGB1-206ENST00000405805 ACTN1P12814 892 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms