RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 TMEM179Q6ZVK1 233 aa12.33□□□□□ -0.44
TTC28-201ENST00000397906 OLA1Q9NTK5 396 aaKnown RBP12.33□□□□□ -0.44
TTC28-201ENST00000397906 SLC27A3Q5K4L6 730 aa12.33□□□□□ -0.44
TTC28-201ENST00000397906 RUFY4Q6ZNE9 571 aa12.33□□□□□ -0.44
TTC28-201ENST00000397906 FAM160B2Q86V87 743 aa12.33□□□□□ -0.44
TTC28-201ENST00000397906 PARVGQ9HBI0 331 aa12.33□□□□□ -0.44
TTC28-201ENST00000397906 MMP19Q99542 508 aa12.33□□□□□ -0.44
TTC28-201ENST00000397906 TUBGCP2Q9BSJ2 902 aa12.33□□□□□ -0.44
TTC28-201ENST00000397906 PLEKHA8P1O95397 391 aa12.33□□□□□ -0.44
TTC28-201ENST00000397906 FOXP1Q9H334 677 aaPredicted RBP12.33□□□□□ -0.44
TTC28-201ENST00000397906 MYO1FO00160 1098 aa12.33□□□□□ -0.44
TTC28-201ENST00000397906 NMT2O60551 498 aa12.33□□□□□ -0.44
TTC28-201ENST00000397906 SLC8A2Q9UPR5 921 aa12.33□□□□□ -0.44
TTC28-201ENST00000397906 AATKQ6ZMQ8 1374 aa12.33□□□□□ -0.44
TTC28-201ENST00000397906 MAGI2Q86UL8 1455 aa12.33□□□□□ -0.44
TTC28-201ENST00000397906 CMA1P23946 247 aa12.33□□□□□ -0.44
TTC28-201ENST00000397906 JADE1Q6IE81 842 aa12.33□□□□□ -0.44
TTC28-201ENST00000397906 LMBRD1Q9NUN5 540 aa12.33□□□□□ -0.44
TTC28-201ENST00000397906 SSH2Q76I76 1423 aa12.33□□□□□ -0.44
TTC28-201ENST00000397906 ELMSAN1Q6PJG2 1045 aa12.33□□□□□ -0.44
TTC28-201ENST00000397906 RHPN2Q8IUC4 686 aa12.33□□□□□ -0.44
TTC28-201ENST00000397906 RASEFQ8IZ41 740 aa12.33□□□□□ -0.44
TTC28-201ENST00000397906 ABCA8O94911 1581 aa12.33□□□□□ -0.44
TTC28-201ENST00000397906 K7ERI5 159 aa12.33□□□□□ -0.44
TTC28-201ENST00000397906 KRT1P04264 644 aa12.33□□□□□ -0.44
TTC28-201ENST00000397906 PTPN12Q05209 780 aaKnown RBP12.33□□□□□ -0.44
TTC28-201ENST00000397906 FAM133AQ8N9E0 248 aa12.33□□□□□ -0.44
TTC28-201ENST00000397906 RAET1EQ8TD07 263 aa12.33□□□□□ -0.44
TTC28-201ENST00000397906 ATP6V1E2Q96A05 226 aa12.33□□□□□ -0.44
TTC28-201ENST00000397906 A0A087WWV3 80 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 EHHADHQ08426 723 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 MINPP1Q9UNW1 487 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 GFPT2O94808 682 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 SRGAP2BP0DMP2 458 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 EPHB1P54762 984 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 OR6B3Q8NGW1 331 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 HSPH1Q92598 858 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 TXNDC9O14530 226 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 GPSM2P81274 684 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 ZNF394Q53GI3 561 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 CELF1Q92879 486 aaKnown RBP12.32□□□□□ -0.44
TTC28-201ENST00000397906 ABCC12Q96J65 1359 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 MED7O43513 233 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 PIDD1Q9HB75 910 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 STXBP2Q15833 593 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 ANKRD20A3Q5VUR7 823 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 SCN4BQ8IWT1 228 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 SLC44A5Q8NCS7 719 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 CASP14P31944 242 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 ERO1AQ96HE7 468 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 AXIN2Q9Y2T1 843 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 POC1B-GALNT4F8VUJ3 575 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 SH2B2O14492 632 aaPredicted RBP12.32□□□□□ -0.44
TTC28-201ENST00000397906 CYP27B1O15528 508 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 RC3H1Q5TC82 1133 aaKnown RBP12.32□□□□□ -0.44
TTC28-201ENST00000397906 IQCDQ96DY2 449 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 BPIFB4P59827 614 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 SEPT2Q15019 361 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 ZNF449Q6P9G9 518 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 TEX2Q8IWB9 1127 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 FBXO18Q8NFZ0 1043 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 ELP3Q9H9T3 547 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 GPR108Q9NPR9 543 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 NARFQ9UHQ1 456 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 STK38LQ9Y2H1 464 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 GNAT1P11488 350 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 MTRQ99707 1265 aa12.32□□□□□ -0.44
TTC28-201ENST00000397906 TMEM206Q9H813 350 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 SCAF8Q9UPN6 1271 aaKnown RBP12.31□□□□□ -0.44
TTC28-201ENST00000397906 TUBBP07437 444 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 SPP2Q13103 211 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 TXNRD1Q16881 649 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 APOBEC3FQ8IUX4 373 aaKnown RBP12.31□□□□□ -0.44
TTC28-201ENST00000397906 TMEM63CQ9P1W3 806 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 PLCG1P19174 1290 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 ARL4AP40617 200 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 IL1RL1Q01638 556 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 ARHGAP42A6NI28 874 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 USP17L15C9J2P7 530 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 USP17L13C9JLJ4 530 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 USP17L11C9JVI0 530 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 USP17L18D6R9N7 530 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 USP17L22D6RA61 530 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 USP17L17D6RBQ6 530 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 USP17L19D6RCP7 530 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 USP17L20D6RJB6 530 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 HOXD10P28358 340 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 USP17L24Q0WX57 530 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 FOXD4Q12950 439 aaPredicted RBP12.31□□□□□ -0.44
TTC28-201ENST00000397906 DARS2Q6PI48 645 aaKnown RBP12.31□□□□□ -0.44
TTC28-201ENST00000397906 USP17L6PQ6QN14 398 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 PLA2G4BP0C869 781 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 POLD4Q9HCU8 107 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 CDC26Q8NHZ8 85 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 AFG1LQ8WV93 481 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 MAP4K1Q92918 833 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 PPP1R12CQ9BZL4 782 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 MYO3BQ8WXR4 1341 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 DNAJC24Q6P3W2 148 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 PDCD6IPQ8WUM4 868 aaKnown RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms