RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 MYZAPP0CAP1 466 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 TRIM21P19474 475 aaKnown RBP6.23□□□□□ -1.41
RFFL-202ENST00000394597 RPS12P25398 132 aaKnown RBP6.23□□□□□ -1.41
RFFL-202ENST00000394597 POLE2P56282 527 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 SEC23AQ15436 765 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 PDCD2Q16342 344 aaPredicted RBP6.23□□□□□ -1.41
RFFL-202ENST00000394597 TSNAXIP1Q2TAA8 658 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 HERC4Q5GLZ8 1057 aaPredicted RBP6.23□□□□□ -1.41
RFFL-202ENST00000394597 RESP18Q5W5W9 173 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 PPP1R18Q6NYC8 613 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 NLRX1Q86UT6 975 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 KIRREL3Q8IZU9 778 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 THOC1Q96FV9 657 aaKnown RBP6.23□□□□□ -1.41
RFFL-202ENST00000394597 WDR24Q96S15 920 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 SUGCTQ9HAC7 445 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 MAGEF1Q9HAY2 307 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 MACROD2A1Z1Q3 448 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 PFDN1O60925 122 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 SKAP2O75563 359 aaPredicted RBP6.23□□□□□ -1.41
RFFL-202ENST00000394597 SMARCA1P28370 1054 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 GGCXP38435 758 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 FKBP1AP62942 108 aaKnown RBP6.23□□□□□ -1.41
RFFL-202ENST00000394597 UBXN1Q04323 297 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 PABPC4Q13310 644 aaKnown RBP eCLIP6.23□□□□□ -1.418e-7■■□□□ 12
RFFL-202ENST00000394597 UBE2SQ16763 222 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 ARHGEF16Q5VV41 709 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 ARMCX5Q6P1M9 558 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 SEPT14Q6ZU15 432 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 HS2ST1Q7LGA3 356 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 KRT26Q7Z3Y9 468 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 TMTC1Q8IUR5 882 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 PARP9Q8IXQ6 854 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 MICALL2Q8IY33 904 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 PRMT6Q96LA8 375 aaPredicted RBP6.23□□□□□ -1.41
RFFL-202ENST00000394597 GSDMAQ96QA5 445 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 FUCA2Q9BTY2 467 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 PHF20Q9BVI0 1012 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.23□□□□□ -1.41
RFFL-202ENST00000394597 SYNRGQ9UMZ2 1314 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 TLDC2A0PJX2 215 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 ARHGEF35A5YM69 484 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 CCDC160A6NGH7 325 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 DDX39AO00148 427 aaKnown RBP6.23□□□□□ -1.41
RFFL-202ENST00000394597 TRAF5O00463 557 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 HIP1RO75146 1068 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 RPL13P26373 211 aaKnown RBP6.23□□□□□ -1.41
RFFL-202ENST00000394597 VSNL1P62760 191 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 ZNF543Q08ER8 600 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 SEMA3FQ13275 785 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 RASA3Q14644 834 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 GADL1Q6ZQY3 521 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 TPH2Q8IWU9 490 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 PROM2Q8N271 834 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 RNF181Q9P0P0 153 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 FEM1BQ9UK73 627 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 HGSO14964 777 aaPredicted RBP6.23□□□□□ -1.41
RFFL-202ENST00000394597 ATP1A3P13637 1013 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 SP4Q02446 784 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 TDRD12Q587J7 1177 aaKnown RBP6.23□□□□□ -1.41
RFFL-202ENST00000394597 FAM83BQ5T0W9 1011 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 CEP128Q6ZU80 1094 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.23□□□□□ -1.41
RFFL-202ENST00000394597 VPS36Q86VN1 386 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 CSGALNACT2Q8N6G5 542 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 NELFBQ8WX92 580 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 EPSTI1Q96J88 318 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 MRIQ9BWK5 157 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 MYOZ2Q9NPC6 264 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 BATF3Q9NR55 127 aa6.23□□□□□ -1.41
RFFL-202ENST00000394597 G3BP2Q9UN86 482 aaKnown RBP6.23□□□□□ -1.41
RFFL-202ENST00000394597 LUC7L2Q9Y383 392 aaKnown RBP6.23□□□□□ -1.41
RFFL-202ENST00000394597 CETN3O15182 167 aa6.22□□□□□ -1.41
RFFL-202ENST00000394597 RPN1P04843 607 aaKnown RBP6.22□□□□□ -1.41
RFFL-202ENST00000394597 KRT13P13646 458 aa6.22□□□□□ -1.41
RFFL-202ENST00000394597 GBP1P32455 592 aa6.22□□□□□ -1.41
RFFL-202ENST00000394597 IREB2P48200 963 aaKnown RBP6.22□□□□□ -1.41
RFFL-202ENST00000394597 IRAK1P51617 712 aa6.22□□□□□ -1.41
RFFL-202ENST00000394597 SNAP25P60880 206 aa6.22□□□□□ -1.41
RFFL-202ENST00000394597 MAP3K9P80192 1104 aa6.22□□□□□ -1.41
RFFL-202ENST00000394597 NFIAQ12857 509 aa6.22□□□□□ -1.41
RFFL-202ENST00000394597 AP3B2Q13367 1082 aa6.22□□□□□ -1.41
RFFL-202ENST00000394597 IQCB1Q15051 598 aa6.22□□□□□ -1.41
RFFL-202ENST00000394597 QRICH1Q2TAL8 776 aa6.22□□□□□ -1.41
RFFL-202ENST00000394597 SLC30A9Q6PML9 568 aa6.22□□□□□ -1.41
RFFL-202ENST00000394597 CYP26C1Q6V0L0 522 aa6.22□□□□□ -1.41
RFFL-202ENST00000394597 CCDC97Q96F63 343 aaPredicted RBP6.22□□□□□ -1.41
RFFL-202ENST00000394597 BICD1Q96G01 975 aa6.22□□□□□ -1.41
RFFL-202ENST00000394597 PSMB7Q99436 277 aa6.22□□□□□ -1.41
RFFL-202ENST00000394597 RABGAP1Q9Y3P9 1069 aa6.22□□□□□ -1.41
RFFL-202ENST00000394597 COL16A1Q07092 1604 aaPredicted RBP6.22□□□□□ -1.41
RFFL-202ENST00000394597 ENC1O14682 589 aa6.22□□□□□ -1.41
RFFL-202ENST00000394597 PDHBP11177 359 aa6.22□□□□□ -1.41
RFFL-202ENST00000394597 KRT9P35527 623 aa6.22□□□□□ -1.41
RFFL-202ENST00000394597 DACT2Q5SW24 774 aa6.22□□□□□ -1.41
RFFL-202ENST00000394597 TTBK2Q6IQ55 1244 aa6.22□□□□□ -1.41
RFFL-202ENST00000394597 MIER3Q7Z3K6 550 aa6.22□□□□□ -1.41
RFFL-202ENST00000394597 IFT20Q8IY31 132 aa6.22□□□□□ -1.41
RFFL-202ENST00000394597 TRMT44Q8IYL2 757 aaKnown RBP6.22□□□□□ -1.41
RFFL-202ENST00000394597 FMR1NBQ8N0W7 255 aaPredicted RBP6.22□□□□□ -1.41
RFFL-202ENST00000394597 UBLCP1Q8WVY7 318 aaPredicted RBP6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms