RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 FGAP02671 866 aa12.77□□□□□ -0.36
SYNPO-202ENST00000394243 CENPUQ71F23 418 aa12.77□□□□□ -0.36
SYNPO-202ENST00000394243 PLA2G4DQ86XP0 818 aa12.77□□□□□ -0.36
SYNPO-202ENST00000394243 LPIN2Q92539 896 aa12.77□□□□□ -0.36
SYNPO-202ENST00000394243 MED10Q9BTT4 135 aa12.77□□□□□ -0.36
SYNPO-202ENST00000394243 MAGEF1Q9HAY2 307 aa12.77□□□□□ -0.36
SYNPO-202ENST00000394243 TRPC1P48995 793 aa12.77□□□□□ -0.36
SYNPO-202ENST00000394243 TMED10P49755 219 aaKnown RBP12.77□□□□□ -0.36
SYNPO-202ENST00000394243 NOP14P78316 857 aaKnown RBP12.77□□□□□ -0.36
SYNPO-202ENST00000394243 IQCB1Q15051 598 aa12.77□□□□□ -0.36
SYNPO-202ENST00000394243 DARS2Q6PI48 645 aaKnown RBP12.77□□□□□ -0.36
SYNPO-202ENST00000394243 ABCC4O15439 1325 aa12.77□□□□□ -0.37
SYNPO-202ENST00000394243 PFDN6O15212 129 aa12.77□□□□□ -0.37
SYNPO-202ENST00000394243 NPR1P16066 1061 aa12.77□□□□□ -0.37
SYNPO-202ENST00000394243 ARHGDIAP52565 204 aa12.77□□□□□ -0.37
SYNPO-202ENST00000394243 TMEM154Q6P9G4 183 aa12.77□□□□□ -0.37
SYNPO-202ENST00000394243 C4orf50Q6ZRC1 276 aa12.77□□□□□ -0.37
SYNPO-202ENST00000394243 SLFN12Q8IYM2 578 aa12.77□□□□□ -0.37
SYNPO-202ENST00000394243 GFM2Q969S9 779 aaKnown RBP12.77□□□□□ -0.37
SYNPO-202ENST00000394243 ATP6V1G3Q96LB4 118 aa12.77□□□□□ -0.37
SYNPO-202ENST00000394243 DAB1O75553 588 aa12.77□□□□□ -0.37
SYNPO-202ENST00000394243 KRT75O95678 551 aa12.77□□□□□ -0.37
SYNPO-202ENST00000394243 TTLL7Q6ZT98 887 aa12.77□□□□□ -0.37
SYNPO-202ENST00000394243 FOXP1Q9H334 677 aaPredicted RBP12.77□□□□□ -0.37
SYNPO-202ENST00000394243 LRRC14Q15048 493 aa12.77□□□□□ -0.37
SYNPO-202ENST00000394243 IFNL3Q8IZI9 196 aa12.77□□□□□ -0.37
SYNPO-202ENST00000394243 CPXCR1Q8N123 301 aa12.77□□□□□ -0.37
SYNPO-202ENST00000394243 SLC26A7Q8TE54 656 aa12.77□□□□□ -0.37
SYNPO-202ENST00000394243 STX18Q9P2W9 335 aaKnown RBP12.77□□□□□ -0.37
SYNPO-202ENST00000394243 CCDC188H7C350 402 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 KLC1Q07866 573 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 MB21D1Q8N884 522 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 DNAAF3Q8N9W5 541 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 KIAA1024Q9UPX6 916 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 FRMPD2Q68DX3 1309 aaPredicted RBP12.76□□□□□ -0.37
SYNPO-202ENST00000394243 HSPA4LO95757 839 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 CCDC144BQ3MJ40 725 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 MAPKAPK5Q8IW41 473 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 TGFBRAP1Q8WUH2 860 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 PGBD1Q96JS3 809 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 DACH2Q96NX9 599 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 SAYSD1Q9NPB0 183 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 TMOD4Q9NZQ9 345 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 GTPBP10A4D1E9 387 aaKnown RBP12.76□□□□□ -0.37
SYNPO-202ENST00000394243 PODXLO00592 558 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 HDAC4P56524 1084 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 RASSF3Q86WH2 238 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.76□□□□□ -0.37
SYNPO-202ENST00000394243 THAP9Q9H5L6 903 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 PSTPIP2Q9H939 334 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 GCNT4Q9P109 453 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 RNF103-CHMP3A0A140T963 221 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 DRP2Q13474 957 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 KIF19Q2TAC6 998 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 TRIM11Q96F44 468 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 ARPP21Q9UBL0 812 aaPredicted RBP12.76□□□□□ -0.37
SYNPO-202ENST00000394243 GGT7Q9UJ14 662 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 A0A1W2PP64 1363 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 TNKSO95271 1327 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 TNNC2P02585 160 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 GCKRQ14397 625 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 ARHGEF25Q86VW2 580 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 LARP4BQ92615 738 aaKnown RBP12.76□□□□□ -0.37
SYNPO-202ENST00000394243 THAP11Q96EK4 314 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 NT5C1BQ96P26 610 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 CUEDC2Q9H467 287 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 EHD2Q9NZN4 543 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 MED23Q9ULK4 1368 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 HNRNPCL2B2RXH8 293 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 IPO5O00410 1097 aaKnown RBP12.76□□□□□ -0.37
SYNPO-202ENST00000394243 COPEO14579 308 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 HNRNPCL1O60812 293 aaKnown RBP12.76□□□□□ -0.37
SYNPO-202ENST00000394243 PSMC2P35998 433 aaKnown RBP12.76□□□□□ -0.37
SYNPO-202ENST00000394243 BPIFB4P59827 614 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 AOC3Q16853 763 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 TEX2Q8IWB9 1127 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 MAP4K1Q92918 833 aa12.76□□□□□ -0.37
SYNPO-202ENST00000394243 ASCC2Q9H1I8 757 aaPredicted RBP12.76□□□□□ -0.37
SYNPO-202ENST00000394243 PMS2P54278 862 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 FSCBQ5H9T9 825 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 GIPC2Q8TF65 315 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 EAF2Q96CJ1 260 aaPredicted RBP12.75□□□□□ -0.37
SYNPO-202ENST00000394243 SUCLA2Q9P2R7 463 aaPredicted RBP12.75□□□□□ -0.37
SYNPO-202ENST00000394243 ESYT3A0FGR9 886 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 SERPINI2O75830 405 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 KRT4P19013 534 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 FKBP3Q00688 224 aaKnown RBP12.75□□□□□ -0.37
SYNPO-202ENST00000394243 GJC2Q5T442 439 aaPredicted RBP12.75□□□□□ -0.37
SYNPO-202ENST00000394243 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.75□□□□□ -0.37
SYNPO-202ENST00000394243 DISC1Q9NRI5 854 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 PDE8AO60658 829 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 TRIM67Q6ZTA4 783 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 LONP2Q86WA8 852 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 UNC5CLQ8IV45 518 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 SSH3Q8TE77 659 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 TFCP2L1Q9NZI6 479 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 STK17AQ9UEE5 414 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 E2F6O75461 281 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 CYTH1Q15438 398 aa12.75□□□□□ -0.37
SYNPO-202ENST00000394243 TEX9Q8N6V9 391 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms