RNA–Protein interactions for RNA: ENST00000380443.5

VPS16-201, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 1 (best)

Gene VPS16, Length 1,825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-201ENST00000380443 MIGA2Q7L4E1 593 aa25.66■■□□□ 1.7
VPS16-201ENST00000380443 CCDC84Q86UT8 332 aaPredicted RBP25.66■■□□□ 1.7
VPS16-201ENST00000380443 SAMD3Q8N6K7 520 aa25.66■■□□□ 1.7
VPS16-201ENST00000380443 ZNF397Q8NF99 534 aaPredicted RBP25.66■■□□□ 1.7
VPS16-201ENST00000380443 TSC1Q92574 1164 aa25.66■■□□□ 1.7
VPS16-201ENST00000380443 HPS3Q969F9 1004 aa25.66■■□□□ 1.7
VPS16-201ENST00000380443 KIFC2Q96AC6 838 aa25.66■■□□□ 1.7
VPS16-201ENST00000380443 ZBED6P86452 979 aa25.65■■□□□ 1.7
VPS16-201ENST00000380443 TUBB2AQ13885 445 aa25.65■■□□□ 1.7
VPS16-201ENST00000380443 MTF1Q14872 753 aa25.65■■□□□ 1.7
VPS16-201ENST00000380443 PPP4R3CPQ6ZMV5 832 aa25.65■■□□□ 1.7
VPS16-201ENST00000380443 TUBB2BQ9BVA1 445 aa25.65■■□□□ 1.7
VPS16-201ENST00000380443 TTYH3Q9C0H2 523 aa25.65■■□□□ 1.7
VPS16-201ENST00000380443 ZNHIT6Q9NWK9 470 aaKnown RBP25.65■■□□□ 1.7
VPS16-201ENST00000380443 MYO1AQ9UBC5 1043 aa25.65■■□□□ 1.7
VPS16-201ENST00000380443 VAV3Q9UKW4 847 aa25.65■■□□□ 1.7
VPS16-201ENST00000380443 IGLV3-22A0A075B6J6 115 aa25.65■■□□□ 1.7
VPS16-201ENST00000380443 DESI2Q9BSY9 194 aa25.65■■□□□ 1.7
VPS16-201ENST00000380443 TUFT1Q9NNX1 390 aa25.65■■□□□ 1.7
VPS16-201ENST00000380443 CGNQ9P2M7 1197 aaKnown RBP25.65■■□□□ 1.7
VPS16-201ENST00000380443 PCDHA2Q9Y5H9 948 aa25.65■■□□□ 1.7
VPS16-201ENST00000380443 PHF20L1A8MW92 1017 aa25.64■■□□□ 1.7
VPS16-201ENST00000380443 WDR46O15213 610 aaKnown RBP25.64■■□□□ 1.7
VPS16-201ENST00000380443 KIF5CO60282 957 aa25.64■■□□□ 1.7
VPS16-201ENST00000380443 CFBP00751 764 aa25.64■■□□□ 1.7
VPS16-201ENST00000380443 KRT18P05783 430 aaKnown RBP25.64■■□□□ 1.7
VPS16-201ENST00000380443 SPATA31C1P0DKV0 1188 aa25.64■■□□□ 1.7
VPS16-201ENST00000380443 STAT3P40763 770 aa25.64■■□□□ 1.7
VPS16-201ENST00000380443 ERVK-24P63145 666 aa25.64■■□□□ 1.7
VPS16-201ENST00000380443 CDK17Q00537 523 aa25.64■■□□□ 1.7
VPS16-201ENST00000380443 RASA3Q14644 834 aa25.64■■□□□ 1.7
VPS16-201ENST00000380443 MEA1Q16626 185 aa25.64■■□□□ 1.7
VPS16-201ENST00000380443 ZCWPW2Q504Y3 356 aa25.64■■□□□ 1.7
VPS16-201ENST00000380443 TRIM21P19474 475 aaKnown RBP25.63■■□□□ 1.69
VPS16-201ENST00000380443 SETQ01105 290 aaPredicted RBP25.63■■□□□ 1.69
VPS16-201ENST00000380443 CCDC174Q6PII3 467 aa25.63■■□□□ 1.69
VPS16-201ENST00000380443 LRRC55Q6ZSA7 311 aa25.63■■□□□ 1.69
VPS16-201ENST00000380443 NDST4Q9H3R1 872 aa25.63■■□□□ 1.69
VPS16-201ENST00000380443 MRPL44Q9H9J2 332 aaKnown RBP25.63■■□□□ 1.69
VPS16-201ENST00000380443 RNF225M0QZC1 329 aaPredicted RBP25.63■■□□□ 1.69
VPS16-201ENST00000380443 ICAM1P05362 532 aa25.63■■□□□ 1.69
VPS16-201ENST00000380443 PPP2R5CQ13362 524 aa25.63■■□□□ 1.69
VPS16-201ENST00000380443 HERC4Q5GLZ8 1057 aaPredicted RBP25.63■■□□□ 1.69
VPS16-201ENST00000380443 DPY19L2Q6NUT2 758 aa25.63■■□□□ 1.69
VPS16-201ENST00000380443 LDHDQ86WU2 507 aa25.63■■□□□ 1.69
VPS16-201ENST00000380443 SLC5A5Q92911 643 aa25.63■■□□□ 1.69
VPS16-201ENST00000380443 EDEM3Q9BZQ6 932 aa25.63■■□□□ 1.69
VPS16-201ENST00000380443 KIAA1683Q9H0B3 1180 aa25.63■■□□□ 1.69
VPS16-201ENST00000380443 MAP3K20Q9NYL2 800 aaKnown RBP25.63■■□□□ 1.69
VPS16-201ENST00000380443 EPN1Q9Y6I3 576 aaPredicted RBP25.63■■□□□ 1.69
VPS16-201ENST00000380443 CTNND1O60716 968 aaKnown RBP25.62■■□□□ 1.69
VPS16-201ENST00000380443 GHRHRQ02643 423 aa25.62■■□□□ 1.69
VPS16-201ENST00000380443 KRT26Q7Z3Y9 468 aa25.62■■□□□ 1.69
VPS16-201ENST00000380443 CCDC170Q8IYT3 715 aa25.62■■□□□ 1.69
VPS16-201ENST00000380443 PDCL2Q8N4E4 241 aa25.62■■□□□ 1.69
VPS16-201ENST00000380443 PRPF38AQ8NAV1 312 aaKnown RBP25.62■■□□□ 1.69
VPS16-201ENST00000380443 FEZ1Q99689 392 aa25.62■■□□□ 1.69
VPS16-201ENST00000380443 POTEFA5A3E0 1075 aa25.61■■□□□ 1.69
VPS16-201ENST00000380443 URI1O94763 535 aaPredicted RBP25.61■■□□□ 1.69
VPS16-201ENST00000380443 EYA4O95677 639 aa25.61■■□□□ 1.69
VPS16-201ENST00000380443 POTEIP0CG38 1075 aa25.61■■□□□ 1.69
VPS16-201ENST00000380443 MARSP56192 900 aaKnown RBP25.61■■□□□ 1.69
VPS16-201ENST00000380443 EDRF1Q3B7T1 1238 aa25.61■■□□□ 1.69
VPS16-201ENST00000380443 ARSHQ5FYA8 562 aa25.61■■□□□ 1.69
VPS16-201ENST00000380443 POTEGQ6S5H5 508 aa25.61■■□□□ 1.69
VPS16-201ENST00000380443 POTEEQ6S8J3 1075 aa25.61■■□□□ 1.69
VPS16-201ENST00000380443 ZNF662Q6ZS27 426 aa25.61■■□□□ 1.69
VPS16-201ENST00000380443 MCF2L2Q86YR7 1114 aa25.61■■□□□ 1.69
VPS16-201ENST00000380443 CDAN1Q8IWY9 1227 aa25.61■■□□□ 1.69
VPS16-201ENST00000380443 TEPSINQ96N21 525 aa25.61■■□□□ 1.69
VPS16-201ENST00000380443 WDR11Q9BZH6 1224 aa25.61■■□□□ 1.69
VPS16-201ENST00000380443 COL4A3BPQ9Y5P4 624 aa25.61■■□□□ 1.69
VPS16-201ENST00000380443 MAP3K9P80192 1104 aa25.6■■□□□ 1.69
VPS16-201ENST00000380443 ARHGAP29Q52LW3 1261 aa25.6■■□□□ 1.69
VPS16-201ENST00000380443 CEP55Q53EZ4 464 aa25.6■■□□□ 1.69
VPS16-201ENST00000380443 ZC3H3Q8IXZ2 948 aaKnown RBP25.6■■□□□ 1.69
VPS16-201ENST00000380443 HOOK2Q96ED9 719 aa25.6■■□□□ 1.69
VPS16-201ENST00000380443 EIF2AK1Q9BQI3 630 aaKnown RBP25.6■■□□□ 1.69
VPS16-201ENST00000380443 EMILIN3Q9NT22 766 aa25.6■■□□□ 1.69
VPS16-201ENST00000380443 PSMD10O75832 226 aa25.6■■□□□ 1.69
VPS16-201ENST00000380443 NDUFA10O95299 355 aa25.6■■□□□ 1.69
VPS16-201ENST00000380443 FDX1P10109 184 aa25.6■■□□□ 1.69
VPS16-201ENST00000380443 HSD17B4P51659 736 aa25.6■■□□□ 1.69
VPS16-201ENST00000380443 KRT83P78385 493 aa25.6■■□□□ 1.69
VPS16-201ENST00000380443 GIT2Q14161 759 aa25.6■■□□□ 1.69
VPS16-201ENST00000380443 OTOP1Q7RTM1 612 aa25.6■■□□□ 1.69
VPS16-201ENST00000380443 PCMTD1Q96MG8 357 aaPredicted RBP25.6■■□□□ 1.69
VPS16-201ENST00000380443 ZNF341Q9BYN7 854 aa25.6■■□□□ 1.69
VPS16-201ENST00000380443 FZD9O00144 591 aa25.59■■□□□ 1.69
VPS16-201ENST00000380443 HNRNPH3P31942 346 aaKnown RBP25.59■■□□□ 1.69
VPS16-201ENST00000380443 CYLC1P35663 651 aaPredicted RBP25.59■■□□□ 1.69
VPS16-201ENST00000380443 HSD17B14Q9BPX1 270 aa25.59■■□□□ 1.69
VPS16-201ENST00000380443 SLF1Q9BQI6 1058 aa25.59■■□□□ 1.69
VPS16-201ENST00000380443 ATAD5Q96QE3 1844 aa25.59■■□□□ 1.69
VPS16-201ENST00000380443 GLTPD2A6NH11 291 aa25.58■■□□□ 1.69
VPS16-201ENST00000380443 TRAF5O00463 557 aa25.58■■□□□ 1.69
VPS16-201ENST00000380443 MEIS1O00470 390 aa25.58■■□□□ 1.69
VPS16-201ENST00000380443 GAP43P17677 238 aa25.58■■□□□ 1.69
VPS16-201ENST00000380443 LRRC41Q15345 812 aa25.58■■□□□ 1.69
VPS16-201ENST00000380443 ZYXQ15942 572 aaKnown RBP25.58■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms