RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 USP17L22D6RA61 530 aa23.95■■□□□ 1.42
TRIM54-202ENST00000380075 USP17L17D6RBQ6 530 aa23.95■■□□□ 1.42
TRIM54-202ENST00000380075 USP17L19D6RCP7 530 aa23.95■■□□□ 1.42
TRIM54-202ENST00000380075 USP17L20D6RJB6 530 aa23.95■■□□□ 1.42
TRIM54-202ENST00000380075 RNF225M0QZC1 329 aaPredicted RBP23.95■■□□□ 1.42
TRIM54-202ENST00000380075 BMP3P12645 472 aa23.95■■□□□ 1.42
TRIM54-202ENST00000380075 TBC1D8BQ0IIM8 1120 aa23.95■■□□□ 1.42
TRIM54-202ENST00000380075 USP17L24Q0WX57 530 aa23.95■■□□□ 1.42
TRIM54-202ENST00000380075 ARHGAP29Q52LW3 1261 aa23.95■■□□□ 1.42
TRIM54-202ENST00000380075 DCAF15Q66K64 600 aa23.95■■□□□ 1.42
TRIM54-202ENST00000380075 USP17L6PQ6QN14 398 aa23.95■■□□□ 1.42
TRIM54-202ENST00000380075 CRYGNQ8WXF5 182 aa23.95■■□□□ 1.42
TRIM54-202ENST00000380075 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.95■■□□□ 1.42
TRIM54-202ENST00000380075 MEIS2O14770 477 aa23.94■■□□□ 1.42
TRIM54-202ENST00000380075 TADA3O75528 432 aa23.94■■□□□ 1.42
TRIM54-202ENST00000380075 GDF11O95390 407 aa23.94■■□□□ 1.42
TRIM54-202ENST00000380075 C1QTNF8P60827 252 aa23.94■■□□□ 1.42
TRIM54-202ENST00000380075 ERCC6LQ2NKX8 1250 aa23.94■■□□□ 1.42
TRIM54-202ENST00000380075 FKBP15Q5T1M5 1219 aa23.94■■□□□ 1.42
TRIM54-202ENST00000380075 C2orf69Q8N8R5 385 aa23.94■■□□□ 1.42
TRIM54-202ENST00000380075 NOC4LQ9BVI4 516 aaKnown RBP23.94■■□□□ 1.42
TRIM54-202ENST00000380075 LZTFL1Q9NQ48 299 aa23.94■■□□□ 1.42
TRIM54-202ENST00000380075 TBC1D12O60347 775 aa23.94■■□□□ 1.42
TRIM54-202ENST00000380075 SHROOM1Q2M3G4 852 aaPredicted RBP23.94■■□□□ 1.42
TRIM54-202ENST00000380075 DYMQ7RTS9 669 aa23.94■■□□□ 1.42
TRIM54-202ENST00000380075 TSG101Q99816 390 aa23.94■■□□□ 1.42
TRIM54-202ENST00000380075 TTYH3Q9C0H2 523 aa23.94■■□□□ 1.42
TRIM54-202ENST00000380075 A0A1W2PQJ5 194 aa23.93■■□□□ 1.42
TRIM54-202ENST00000380075 TMEM88BA6NKF7 163 aa23.93■■□□□ 1.42
TRIM54-202ENST00000380075 GH2P01242 217 aa23.93■■□□□ 1.42
TRIM54-202ENST00000380075 APLP1P51693 650 aa23.93■■□□□ 1.42
TRIM54-202ENST00000380075 MEA1Q16626 185 aa23.93■■□□□ 1.42
TRIM54-202ENST00000380075 HAUS3Q68CZ6 603 aa23.93■■□□□ 1.42
TRIM54-202ENST00000380075 KCNK18Q7Z418 384 aa23.93■■□□□ 1.42
TRIM54-202ENST00000380075 KLRG1Q96E93 195 aa23.93■■□□□ 1.42
TRIM54-202ENST00000380075 CARD6Q9BX69 1037 aa23.93■■□□□ 1.42
TRIM54-202ENST00000380075 ZNF341Q9BYN7 854 aa23.93■■□□□ 1.42
TRIM54-202ENST00000380075 IDEP14735 1019 aa23.92■■□□□ 1.42
TRIM54-202ENST00000380075 H2AFXP16104 143 aaPredicted RBP23.92■■□□□ 1.42
TRIM54-202ENST00000380075 ZBED6P86452 979 aa23.92■■□□□ 1.42
TRIM54-202ENST00000380075 ARHGAP4P98171 946 aa23.92■■□□□ 1.42
TRIM54-202ENST00000380075 Q4G0T1 1027 aa23.92■■□□□ 1.42
TRIM54-202ENST00000380075 MIIPQ5JXC2 388 aa23.92■■□□□ 1.42
TRIM54-202ENST00000380075 EPN1Q9Y6I3 576 aaPredicted RBP23.92■■□□□ 1.42
TRIM54-202ENST00000380075 PHF20L1A8MW92 1017 aa23.92■■□□□ 1.42
TRIM54-202ENST00000380075 NDUFA10O95299 355 aa23.92■■□□□ 1.42
TRIM54-202ENST00000380075 FBXO38Q6PIJ6 1188 aa23.92■■□□□ 1.42
TRIM54-202ENST00000380075 ARMC9Q7Z3E5 817 aa23.92■■□□□ 1.42
TRIM54-202ENST00000380075 DNAJC19Q96DA6 116 aa23.92■■□□□ 1.42
TRIM54-202ENST00000380075 ZNHIT6Q9NWK9 470 aaKnown RBP23.92■■□□□ 1.42
TRIM54-202ENST00000380075 OGFRQ9NZT2 677 aa23.92■■□□□ 1.42
TRIM54-202ENST00000380075 TRIM21P19474 475 aaKnown RBP23.91■■□□□ 1.42
TRIM54-202ENST00000380075 SREBF1P36956 1147 aa23.91■■□□□ 1.42
TRIM54-202ENST00000380075 FKBP1BP68106 108 aa23.91■■□□□ 1.42
TRIM54-202ENST00000380075 PPP2R3AQ06190 1150 aa23.91■■□□□ 1.42
TRIM54-202ENST00000380075 IKQ13123 557 aaPredicted RBP23.91■■□□□ 1.42
TRIM54-202ENST00000380075 ECM1Q16610 540 aa23.91■■□□□ 1.42
TRIM54-202ENST00000380075 ACRBPQ8NEB7 543 aa23.91■■□□□ 1.42
TRIM54-202ENST00000380075 WRNIP1Q96S55 665 aa23.91■■□□□ 1.42
TRIM54-202ENST00000380075 ARHGEF10LQ9HCE6 1279 aa23.91■■□□□ 1.42
TRIM54-202ENST00000380075 SPDYE3A6NKU9 549 aa23.91■■□□□ 1.42
TRIM54-202ENST00000380075 IREB2P48200 963 aaKnown RBP23.91■■□□□ 1.42
TRIM54-202ENST00000380075 COASYQ13057 564 aa23.91■■□□□ 1.42
TRIM54-202ENST00000380075 RRP1BQ14684 758 aaKnown RBP23.91■■□□□ 1.42
TRIM54-202ENST00000380075 MAN2A1Q16706 1144 aa23.91■■□□□ 1.42
TRIM54-202ENST00000380075 ZNF662Q6ZS27 426 aa23.91■■□□□ 1.42
TRIM54-202ENST00000380075 SAPCD2Q86UD0 394 aa23.91■■□□□ 1.42
TRIM54-202ENST00000380075 CCDC65Q8IXS2 484 aa23.91■■□□□ 1.42
TRIM54-202ENST00000380075 LRRN4CLQ8ND94 238 aa23.91■■□□□ 1.42
TRIM54-202ENST00000380075 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.91■■□□□ 1.42
TRIM54-202ENST00000380075 ERMNQ8TAM6 284 aa23.91■■□□□ 1.42
TRIM54-202ENST00000380075 HPS3Q969F9 1004 aa23.91■■□□□ 1.42
TRIM54-202ENST00000380075 FAM20AQ96MK3 541 aa23.91■■□□□ 1.42
TRIM54-202ENST00000380075 ZNF112Q9UJU3 913 aa23.91■■□□□ 1.42
TRIM54-202ENST00000380075 KIF20AO95235 890 aa23.9■■□□□ 1.42
TRIM54-202ENST00000380075 INPP5BP32019 993 aa23.9■■□□□ 1.42
TRIM54-202ENST00000380075 CIITAP33076 1130 aa23.9■■□□□ 1.42
TRIM54-202ENST00000380075 CDK17Q00537 523 aa23.9■■□□□ 1.42
TRIM54-202ENST00000380075 VWA3BQ502W6 1294 aa23.9■■□□□ 1.42
TRIM54-202ENST00000380075 MYOCDQ8IZQ8 938 aa23.9■■□□□ 1.42
TRIM54-202ENST00000380075 ETNPPLQ8TBG4 499 aa23.9■■□□□ 1.42
TRIM54-202ENST00000380075 ZKSCAN4Q969J2 545 aaPredicted RBP23.9■■□□□ 1.42
TRIM54-202ENST00000380075 ARGLU1Q9NWB6 273 aaPredicted RBP23.9■■□□□ 1.42
TRIM54-202ENST00000380075 DDX41Q9UJV9 622 aaKnown RBP23.9■■□□□ 1.42
TRIM54-202ENST00000380075 PIK3CDO00329 1044 aa23.89■■□□□ 1.42
TRIM54-202ENST00000380075 TUBB4BP68371 445 aa23.89■■□□□ 1.42
TRIM54-202ENST00000380075 KRT83P78385 493 aa23.89■■□□□ 1.42
TRIM54-202ENST00000380075 ZNF569Q5MCW4 686 aa23.89■■□□□ 1.42
TRIM54-202ENST00000380075 CCDC84Q86UT8 332 aaPredicted RBP23.89■■□□□ 1.42
TRIM54-202ENST00000380075 CCDC170Q8IYT3 715 aa23.89■■□□□ 1.42
TRIM54-202ENST00000380075 PANK4Q9NVE7 773 aa23.89■■□□□ 1.42
TRIM54-202ENST00000380075 ABT1Q9ULW3 272 aaKnown RBP23.89■■□□□ 1.42
TRIM54-202ENST00000380075 CTAGE9A4FU28 777 aa23.89■■□□□ 1.41
TRIM54-202ENST00000380075 CYLC1P35663 651 aaPredicted RBP23.89■■□□□ 1.41
TRIM54-202ENST00000380075 HUNKP57058 714 aa23.89■■□□□ 1.41
TRIM54-202ENST00000380075 FAM26FQ5R3K3 315 aa23.89■■□□□ 1.41
TRIM54-202ENST00000380075 LDLRAD1Q5T700 205 aa23.89■■□□□ 1.41
TRIM54-202ENST00000380075 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.89■■□□□ 1.41
TRIM54-202ENST00000380075 KCTD17Q8N5Z5 321 aa23.89■■□□□ 1.41
TRIM54-202ENST00000380075 CHP1Q99653 195 aa23.89■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms