RNA–Protein interactions for RNA: ENST00000375218.3

UBR4-201, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 4,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-201ENST00000375218 CCDC114Q96M63 670 aa9.98□□□□□ -0.81
UBR4-201ENST00000375218 OSBPL3Q9H4L5 887 aa9.98□□□□□ -0.81
UBR4-201ENST00000375218 BICC1Q9H694 974 aaKnown RBP9.98□□□□□ -0.81
UBR4-201ENST00000375218 UPF2Q9HAU5 1272 aaKnown RBP9.98□□□□□ -0.81
UBR4-201ENST00000375218 SEPT11Q9NVA2 429 aaKnown RBP9.98□□□□□ -0.81
UBR4-201ENST00000375218 SAP30BPQ9UHR5 308 aaKnown RBP9.98□□□□□ -0.81
UBR4-201ENST00000375218 TNS2Q63HR2 1409 aa9.98□□□□□ -0.81
UBR4-201ENST00000375218 C4AP0C0L4 1744 aa9.98□□□□□ -0.81
UBR4-201ENST00000375218 C4BP0C0L5 1744 aa9.98□□□□□ -0.81
UBR4-201ENST00000375218 BCAMP50895 628 aa9.98□□□□□ -0.81
UBR4-201ENST00000375218 RABEP1Q15276 862 aa9.98□□□□□ -0.81
UBR4-201ENST00000375218 SDCCAG8Q86SQ7 713 aaPredicted RBP9.98□□□□□ -0.81
UBR4-201ENST00000375218 CCDC170Q8IYT3 715 aa9.98□□□□□ -0.81
UBR4-201ENST00000375218 LSMEM1Q8N8F7 131 aa9.98□□□□□ -0.81
UBR4-201ENST00000375218 TTPALQ9BTX7 342 aa9.98□□□□□ -0.81
UBR4-201ENST00000375218 TMUB1Q9BVT8 246 aa9.98□□□□□ -0.81
UBR4-201ENST00000375218 SLC26A6Q9BXS9 759 aa9.98□□□□□ -0.81
UBR4-201ENST00000375218 ACAD9Q9H845 621 aa9.98□□□□□ -0.81
UBR4-201ENST00000375218 PHTF1Q9UMS5 762 aa9.98□□□□□ -0.81
UBR4-201ENST00000375218 ZNF646O15015 1829 aaPredicted RBP9.98□□□□□ -0.81
UBR4-201ENST00000375218 GOLGA6L19H0YKK7 550 aa9.98□□□□□ -0.81
UBR4-201ENST00000375218 PDE8AO60658 829 aa9.98□□□□□ -0.81
UBR4-201ENST00000375218 SNX4O95219 450 aa9.98□□□□□ -0.81
UBR4-201ENST00000375218 KRT28Q7Z3Y7 464 aa9.98□□□□□ -0.81
UBR4-201ENST00000375218 TMEM57Q8N5G2 664 aa9.98□□□□□ -0.81
UBR4-201ENST00000375218 LRRN4Q8WUT4 740 aa9.98□□□□□ -0.81
UBR4-201ENST00000375218 TNIP3Q96KP6 325 aa9.98□□□□□ -0.81
UBR4-201ENST00000375218 SLC4A9Q96Q91 983 aa9.98□□□□□ -0.81
UBR4-201ENST00000375218 NSRP1Q9H0G5 558 aaKnown RBP9.98□□□□□ -0.81
UBR4-201ENST00000375218 TCP11L1Q9NUJ3 509 aa9.98□□□□□ -0.81
UBR4-201ENST00000375218 PGAP2Q9UHJ9 254 aa9.98□□□□□ -0.81
UBR4-201ENST00000375218 MCM8Q9UJA3 840 aa9.98□□□□□ -0.81
UBR4-201ENST00000375218 R3HCC1Q9Y3T6 440 aaKnown RBP9.98□□□□□ -0.81
UBR4-201ENST00000375218 JRKLQ9Y4A0 524 aa9.98□□□□□ -0.81
UBR4-201ENST00000375218 ADCY9O60503 1353 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 KPNA6O60684 536 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 HSPA4LO95757 839 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 TMEM11P17152 192 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 ECE1P42892 770 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 KLHL30Q0D2K2 578 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 STRN3Q13033 797 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 IKQ13123 557 aaPredicted RBP9.97□□□□□ -0.81
UBR4-201ENST00000375218 RAB33AQ14088 237 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 ELOAQ14241 798 aaKnown RBP9.97□□□□□ -0.81
UBR4-201ENST00000375218 KIF22Q14807 665 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 PTF1AQ7RTS3 328 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 RPAP2Q8IXW5 612 aaPredicted RBP9.97□□□□□ -0.81
UBR4-201ENST00000375218 EFCAB13Q8IY85 973 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 CEP70Q8NHQ1 597 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 KAZALD1Q96I82 304 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 CRB3Q9BUF7 120 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 SLC13A1Q9BZW2 595 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 CYP4F11Q9HBI6 524 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 RIMKLBQ9ULI2 386 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 ZBTB21Q9ULJ3 1066 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 PCDHB8Q9UN66 801 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 AGTPBP1Q9UPW5 1226 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 PCDHB3Q9Y5E6 796 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 PCDHB13Q9Y5F0 798 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 KRBA1A5PL33 1030 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 USP17L5A8MUK1 530 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 PLOD3O60568 738 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 GNRH1P01148 92 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 PDHA1P08559 390 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 CAP2P40123 477 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 NR1H3Q13133 447 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 SAFBQ15424 915 aaKnown RBP eCLIP9.97□□□□□ -0.81
UBR4-201ENST00000375218 KIAA0753Q2KHM9 967 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 RAB11FIP4Q86YS3 637 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 C2orf69Q8N8R5 385 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 USP38Q8NB14 1042 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 ZNF540Q8NDQ6 660 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 NCOA5Q9HCD5 579 aaKnown RBP9.97□□□□□ -0.81
UBR4-201ENST00000375218 TCF7L2Q9NQB0 619 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 HELLSQ9NRZ9 838 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 HOMER3Q9NSC5 361 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 SPO11Q9Y5K1 396 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 MAP3K6O95382 1288 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 PRKAR2AP13861 404 aaKnown RBP9.97□□□□□ -0.81
UBR4-201ENST00000375218 CCDC57Q2TAC2 916 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 SH2D4BQ5SQS7 431 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 BBOF1Q8ND07 529 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 SARGQ9BW04 601 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 STRIP2Q9ULQ0 834 aa9.97□□□□□ -0.81
UBR4-201ENST00000375218 CPP00450 1065 aa9.96□□□□□ -0.81
UBR4-201ENST00000375218 PRKG1Q13976 671 aa9.96□□□□□ -0.81
UBR4-201ENST00000375218 CHRNA2Q15822 529 aa9.96□□□□□ -0.81
UBR4-201ENST00000375218 LRRC49Q8IUZ0 686 aa9.96□□□□□ -0.81
UBR4-201ENST00000375218 UCMAQ8WVF2 138 aa9.96□□□□□ -0.81
UBR4-201ENST00000375218 C7orf25Q9BPX7 421 aa9.96□□□□□ -0.81
UBR4-201ENST00000375218 VCX3BQ9H321 246 aa9.96□□□□□ -0.81
UBR4-201ENST00000375218 MTF2Q9Y483 593 aaPredicted RBP9.96□□□□□ -0.81
UBR4-201ENST00000375218 BCL9LQ86UU0 1499 aa9.96□□□□□ -0.81
UBR4-201ENST00000375218 ZNF831Q5JPB2 1677 aa9.96□□□□□ -0.81
UBR4-201ENST00000375218 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.96□□□□□ -0.82
UBR4-201ENST00000375218 CEP104O60308 925 aa9.96□□□□□ -0.82
UBR4-201ENST00000375218 ATP6V1B1P15313 513 aa9.96□□□□□ -0.82
UBR4-201ENST00000375218 CD83Q01151 205 aa9.96□□□□□ -0.82
UBR4-201ENST00000375218 LRRC74AQ0VAA2 488 aa9.96□□□□□ -0.82
UBR4-201ENST00000375218 PRKG2Q13237 762 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms