RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 FKBP3Q00688 224 aaKnown RBP18.03■□□□□ 0.48
SDC4-201ENST00000372733 ORC2Q13416 577 aaPredicted RBP18.03■□□□□ 0.48
SDC4-201ENST00000372733 KIAA0753Q2KHM9 967 aa18.03■□□□□ 0.48
SDC4-201ENST00000372733 KRT79Q5XKE5 535 aa18.03■□□□□ 0.48
SDC4-201ENST00000372733 MCTP2Q6DN12 878 aa18.03■□□□□ 0.48
SDC4-201ENST00000372733 B4GALNT4Q76KP1 1039 aa18.03■□□□□ 0.48
SDC4-201ENST00000372733 FAM133AQ8N9E0 248 aa18.03■□□□□ 0.48
SDC4-201ENST00000372733 PCDHGC5Q9Y5F6 944 aa18.03■□□□□ 0.48
SDC4-201ENST00000372733 CAPN7Q9Y6W3 813 aa18.03■□□□□ 0.48
SDC4-201ENST00000372733 BAG3O95817 575 aa18.03■□□□□ 0.48
SDC4-201ENST00000372733 SSBP05455 408 aaKnown RBP eCLIP18.03■□□□□ 0.48
SDC4-201ENST00000372733 TNNI2P48788 182 aa18.03■□□□□ 0.48
SDC4-201ENST00000372733 PDE4CQ08493 712 aa18.03■□□□□ 0.48
SDC4-201ENST00000372733 SLC18A3Q16572 532 aa18.03■□□□□ 0.48
SDC4-201ENST00000372733 PTPROQ16827 1216 aa18.03■□□□□ 0.48
SDC4-201ENST00000372733 KCTD19Q17RG1 926 aaPredicted RBP18.03■□□□□ 0.48
SDC4-201ENST00000372733 MAATS1Q7Z4T9 603 aa18.03■□□□□ 0.48
SDC4-201ENST00000372733 PROM2Q8N271 834 aa18.03■□□□□ 0.48
SDC4-201ENST00000372733 DNAJC19Q96DA6 116 aa18.03■□□□□ 0.48
SDC4-201ENST00000372733 GPR101Q96P66 508 aaPredicted RBP18.03■□□□□ 0.48
SDC4-201ENST00000372733 GOLPH3Q9H4A6 298 aa18.03■□□□□ 0.48
SDC4-201ENST00000372733 ADAMTS1Q9UHI8 967 aa18.03■□□□□ 0.48
SDC4-201ENST00000372733 KIAA0754O94854 1291 aa18.02■□□□□ 0.48
SDC4-201ENST00000372733 SEC24CP53992 1094 aa18.02■□□□□ 0.48
SDC4-201ENST00000372733 FAM26FQ5R3K3 315 aa18.02■□□□□ 0.48
SDC4-201ENST00000372733 UIMC1Q96RL1 719 aa18.02■□□□□ 0.48
SDC4-201ENST00000372733 EPN3Q9H201 632 aa18.02■□□□□ 0.48
SDC4-201ENST00000372733 LUC7LQ9NQ29 371 aaKnown RBP18.02■□□□□ 0.48
SDC4-201ENST00000372733 SRP68Q9UHB9 627 aaKnown RBP18.02■□□□□ 0.48
SDC4-201ENST00000372733 PLAAQ9Y263 795 aa18.02■□□□□ 0.48
SDC4-201ENST00000372733 ESYT2A0FGR8 921 aa18.02■□□□□ 0.48
SDC4-201ENST00000372733 A6NNZ2 444 aa18.02■□□□□ 0.48
SDC4-201ENST00000372733 PPP1R37O75864 691 aa18.02■□□□□ 0.48
SDC4-201ENST00000372733 ADCY7P51828 1080 aa18.02■□□□□ 0.48
SDC4-201ENST00000372733 PTGISQ16647 500 aa18.02■□□□□ 0.48
SDC4-201ENST00000372733 TUBB8Q3ZCM7 444 aa18.02■□□□□ 0.48
SDC4-201ENST00000372733 NBPF5PQ86XG9 351 aaPredicted RBP18.02■□□□□ 0.48
SDC4-201ENST00000372733 NEDD1Q8NHV4 660 aa18.02■□□□□ 0.48
SDC4-201ENST00000372733 SYN2Q92777 582 aaPredicted RBP18.02■□□□□ 0.48
SDC4-201ENST00000372733 ATP6V1G3Q96LB4 118 aa18.02■□□□□ 0.48
SDC4-201ENST00000372733 DDX60LQ5H9U9 1706 aaKnown RBP18.02■□□□□ 0.48
SDC4-201ENST00000372733 MYO1FO00160 1098 aa18.02■□□□□ 0.47
SDC4-201ENST00000372733 IRX3P78415 501 aaPredicted RBP18.02■□□□□ 0.47
SDC4-201ENST00000372733 CACNB1Q02641 598 aaPredicted RBP18.02■□□□□ 0.47
SDC4-201ENST00000372733 KLHL30Q0D2K2 578 aa18.02■□□□□ 0.47
SDC4-201ENST00000372733 PSMD2Q13200 908 aa18.02■□□□□ 0.47
SDC4-201ENST00000372733 CDC37Q16543 378 aaPredicted RBP18.02■□□□□ 0.47
SDC4-201ENST00000372733 CEP85LQ5SZL2 805 aa18.02■□□□□ 0.47
SDC4-201ENST00000372733 C16orf86Q6ZW13 317 aa18.02■□□□□ 0.47
SDC4-201ENST00000372733 DNAAF5Q86Y56 855 aa18.02■□□□□ 0.47
SDC4-201ENST00000372733 CD302Q8IX05 232 aa18.02■□□□□ 0.47
SDC4-201ENST00000372733 OTUD6BQ8N6M0 293 aa18.02■□□□□ 0.47
SDC4-201ENST00000372733 USP38Q8NB14 1042 aa18.02■□□□□ 0.47
SDC4-201ENST00000372733 WDR66Q8TBY9 1149 aa18.02■□□□□ 0.47
SDC4-201ENST00000372733 WHAMMQ8TF30 809 aa18.02■□□□□ 0.47
SDC4-201ENST00000372733 ZNF473Q8WTR7 871 aaKnown RBP18.02■□□□□ 0.47
SDC4-201ENST00000372733 RAB34Q9BZG1 259 aa18.02■□□□□ 0.47
SDC4-201ENST00000372733 NUCKS1Q9H1E3 243 aaKnown RBP18.02■□□□□ 0.47
SDC4-201ENST00000372733 PANK4Q9NVE7 773 aa18.02■□□□□ 0.47
SDC4-201ENST00000372733 COL16A1Q07092 1604 aaPredicted RBP18.01■□□□□ 0.47
SDC4-201ENST00000372733 HPDP32754 393 aaPredicted RBP18.01■□□□□ 0.47
SDC4-201ENST00000372733 ERVK-9P63128 1117 aa18.01■□□□□ 0.47
SDC4-201ENST00000372733 HDLBPQ00341 1268 aaKnown RBP18.01■□□□□ 0.47
SDC4-201ENST00000372733 HLTFQ14527 1009 aaKnown RBP eCLIP18.01■□□□□ 0.47
SDC4-201ENST00000372733 UBE2SQ16763 222 aa18.01■□□□□ 0.47
SDC4-201ENST00000372733 CNPY4Q8N129 248 aa18.01■□□□□ 0.47
SDC4-201ENST00000372733 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.01■□□□□ 0.47
SDC4-201ENST00000372733 ATXN2Q99700 1313 aaKnown RBP18.01■□□□□ 0.47
SDC4-201ENST00000372733 KCNK3O14649 394 aa18.01■□□□□ 0.47
SDC4-201ENST00000372733 MEFVO15553 781 aaPredicted RBP18.01■□□□□ 0.47
SDC4-201ENST00000372733 TNNC1P63316 161 aa18.01■□□□□ 0.47
SDC4-201ENST00000372733 TRIM59Q8IWR1 403 aa18.01■□□□□ 0.47
SDC4-201ENST00000372733 RTFDC1Q9BY42 306 aaPredicted RBP18.01■□□□□ 0.47
SDC4-201ENST00000372733 CENPHQ9H3R5 247 aa18.01■□□□□ 0.47
SDC4-201ENST00000372733 COL5A3P25940 1745 aaPredicted RBP18■□□□□ 0.47
SDC4-201ENST00000372733 BTDP43251 543 aa18■□□□□ 0.47
SDC4-201ENST00000372733 FNTAP49354 379 aa18■□□□□ 0.47
SDC4-201ENST00000372733 PPP4CP60510 307 aa18■□□□□ 0.47
SDC4-201ENST00000372733 GSTO1P78417 241 aa18■□□□□ 0.47
SDC4-201ENST00000372733 ASIC2Q16515 512 aa18■□□□□ 0.47
SDC4-201ENST00000372733 PROCA1Q8NCQ7 364 aaPredicted RBP18■□□□□ 0.47
SDC4-201ENST00000372733 OR2W6PQ8NHA6 318 aa18■□□□□ 0.47
SDC4-201ENST00000372733 ANKIB1Q9P2G1 1089 aa18■□□□□ 0.47
SDC4-201ENST00000372733 NPHP3-ACAD11A0A0J9YXS1 232 aa18■□□□□ 0.47
SDC4-201ENST00000372733 MYBP10242 640 aa18■□□□□ 0.47
SDC4-201ENST00000372733 HSPA9P38646 679 aaKnown RBP18■□□□□ 0.47
SDC4-201ENST00000372733 ITGB3BPQ13352 177 aaPredicted RBP18■□□□□ 0.47
SDC4-201ENST00000372733 ARHGAP27Q6ZUM4 889 aa18■□□□□ 0.47
SDC4-201ENST00000372733 PRPF38AQ8NAV1 312 aaKnown RBP18■□□□□ 0.47
SDC4-201ENST00000372733 MYCBPAPQ8TBZ2 947 aa18■□□□□ 0.47
SDC4-201ENST00000372733 GANQ9H2C0 597 aa18■□□□□ 0.47
SDC4-201ENST00000372733 RIOX1Q9H6W3 641 aa18■□□□□ 0.47
SDC4-201ENST00000372733 ZNF287Q9HBT7 754 aa18■□□□□ 0.47
SDC4-201ENST00000372733 PDHBP11177 359 aa17.99■□□□□ 0.47
SDC4-201ENST00000372733 ECHS1P30084 290 aa17.99■□□□□ 0.47
SDC4-201ENST00000372733 MDH1P40925 334 aaKnown RBP17.99■□□□□ 0.47
SDC4-201ENST00000372733 PDIA5Q14554 519 aa17.99■□□□□ 0.47
SDC4-201ENST00000372733 NLRP14Q86W24 1093 aa17.99■□□□□ 0.47
SDC4-201ENST00000372733 DDX42Q86XP3 938 aaKnown RBP eCLIP17.99■□□□□ 0.47
SDC4-201ENST00000372733 CLEC10AQ8IUN9 316 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms