RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 MYD88Q99836 296 aa4.46□□□□□ -1.7
MCF2-203ENST00000370576 CCDC8Q9H0W5 538 aaPredicted RBP4.46□□□□□ -1.7
MCF2-203ENST00000370576 NLRC4Q9NPP4 1024 aa4.46□□□□□ -1.7
MCF2-203ENST00000370576 WDR35Q9P2L0 1181 aa4.46□□□□□ -1.7
MCF2-203ENST00000370576 ZMYM5Q9UJ78 669 aa4.46□□□□□ -1.7
MCF2-203ENST00000370576 RABL2BQ9UNT1 228 aa4.46□□□□□ -1.7
MCF2-203ENST00000370576 SSC5DA1L4H1 1573 aa4.46□□□□□ -1.7
MCF2-203ENST00000370576 FAM237AA0A1B0GTK4 181 aa4.46□□□□□ -1.7
MCF2-203ENST00000370576 RASSF10A6NK89 507 aa4.46□□□□□ -1.7
MCF2-203ENST00000370576 FOXN3O00409 490 aaPredicted RBP4.46□□□□□ -1.7
MCF2-203ENST00000370576 PDE8BO95263 885 aa4.46□□□□□ -1.7
MCF2-203ENST00000370576 TPM2P07951 284 aa4.46□□□□□ -1.7
MCF2-203ENST00000370576 PARP1P09874 1014 aaKnown RBP4.46□□□□□ -1.7
MCF2-203ENST00000370576 HSD3B1P14060 373 aa4.46□□□□□ -1.7
MCF2-203ENST00000370576 RXRBP28702 533 aa4.46□□□□□ -1.7
MCF2-203ENST00000370576 LIMK1P53667 647 aa4.46□□□□□ -1.7
MCF2-203ENST00000370576 PABPC4Q13310 644 aaKnown RBP eCLIP4.46□□□□□ -1.7
MCF2-203ENST00000370576 TMED1Q13445 227 aa4.46□□□□□ -1.7
MCF2-203ENST00000370576 COL9A2Q14055 689 aaPredicted RBP4.46□□□□□ -1.7
MCF2-203ENST00000370576 SSPNQ14714 243 aa4.46□□□□□ -1.7
MCF2-203ENST00000370576 MAP7D1Q3KQU3 841 aa4.46□□□□□ -1.7
MCF2-203ENST00000370576 SYDE1Q6ZW31 735 aaPredicted RBP4.46□□□□□ -1.7
MCF2-203ENST00000370576 PTF1AQ7RTS3 328 aa4.46□□□□□ -1.7
MCF2-203ENST00000370576 ZBED3Q96IU2 234 aaPredicted RBP4.46□□□□□ -1.7
MCF2-203ENST00000370576 MFSD14AQ96MC6 490 aa4.46□□□□□ -1.7
MCF2-203ENST00000370576 NIFKQ9BYG3 293 aaKnown RBP4.46□□□□□ -1.7
MCF2-203ENST00000370576 SAP130Q9H0E3 1048 aa4.46□□□□□ -1.7
MCF2-203ENST00000370576 CNNM2Q9H8M5 875 aa4.46□□□□□ -1.7
MCF2-203ENST00000370576 TMEM98Q9Y2Y6 226 aa4.46□□□□□ -1.7
MCF2-203ENST00000370576 COL11A1P12107 1806 aaPredicted RBP4.45□□□□□ -1.7
MCF2-203ENST00000370576 SFI1A8K8P3 1242 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 HOXC11O43248 304 aaPredicted RBP4.45□□□□□ -1.7
MCF2-203ENST00000370576 PCP11498 1178 aaKnown RBP4.45□□□□□ -1.7
MCF2-203ENST00000370576 GRK6P43250 576 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 GIPRP48546 466 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 NFKB2Q00653 900 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 CBX2Q14781 532 aaPredicted RBP4.45□□□□□ -1.7
MCF2-203ENST00000370576 TMEM240Q5SV17 173 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 GPR158Q5T848 1215 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 VPS53Q5VIR6 699 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 NLRP8Q86W28 1048 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 NIM1KQ8IY84 436 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 VWCEQ96DN2 955 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 LTV1Q96GA3 475 aaPredicted RBP4.45□□□□□ -1.7
MCF2-203ENST00000370576 ABHD17AQ96GS6 310 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 TTLL2Q9BWV7 592 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 TLR7Q9NYK1 1049 aaKnown RBP4.45□□□□□ -1.7
MCF2-203ENST00000370576 FAM184BQ9ULE4 1060 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 ZDHHC9Q9Y397 364 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 SPEF1Q9Y4P9 236 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 N6AMT1Q9Y5N5 214 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 SNX5Q9Y5X3 404 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 PNMA6FA0A0J9YX94 578 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 ZBBXA8MT70 800 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 M0R3H8 397 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 DDX3YO15523 660 aaKnown RBP4.45□□□□□ -1.7
MCF2-203ENST00000370576 CD2BP2O95400 341 aaKnown RBP4.45□□□□□ -1.7
MCF2-203ENST00000370576 F12P00748 615 aaPredicted RBP4.45□□□□□ -1.7
MCF2-203ENST00000370576 HRGP04196 525 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 ZFYP08048 801 aaPredicted RBP4.45□□□□□ -1.7
MCF2-203ENST00000370576 SCNN1DP51172 638 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 KRT85P78386 507 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 GRM3Q14832 879 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 LONRF2Q1L5Z9 754 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 SBK1Q52WX2 424 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 GALNT17Q6IS24 598 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 POTEDQ86YR6 584 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 ASIC4Q96FT7 647 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 SGCZQ96LD1 299 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 WDR12Q9GZL7 423 aaKnown RBP4.45□□□□□ -1.7
MCF2-203ENST00000370576 NYXQ9GZU5 481 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 KCTD10Q9H3F6 313 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 SEMA6BQ9H3T3 888 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 COL4A4P53420 1690 aaPredicted RBP4.45□□□□□ -1.7
MCF2-203ENST00000370576 B4E171 279 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 CPLX1O14810 134 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 OPLAHO14841 1288 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 CTAGE5O15320 804 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 SRGAP3O43295 1099 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 COL6A2P12110 1019 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 KIF5BP33176 963 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 SEPHS1P49903 392 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 CACNB2Q08289 660 aaPredicted RBP4.45□□□□□ -1.7
MCF2-203ENST00000370576 PTPN14Q15678 1187 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 WSCD2Q2TBF2 565 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 PDE12Q6L8Q7 609 aaKnown RBP4.45□□□□□ -1.7
MCF2-203ENST00000370576 GPR155Q7Z3F1 870 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 RALYLQ86SE5 291 aaKnown RBP4.45□□□□□ -1.7
MCF2-203ENST00000370576 UHMK1Q8TAS1 419 aaKnown RBP4.45□□□□□ -1.7
MCF2-203ENST00000370576 MAML1Q92585 1016 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 AIFM3Q96NN9 605 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 CSRNP1Q96S65 589 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 MCM8Q9UJA3 840 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 PCDHGA4Q9Y5G9 962 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 PCDHGA10Q9Y5H3 936 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 SNX14Q9Y5W7 946 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 TACC3Q9Y6A5 838 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 TRPM7Q96QT4 1865 aa4.45□□□□□ -1.7
MCF2-203ENST00000370576 PLXNA1Q9UIW2 1896 aa4.44□□□□□ -1.7
MCF2-203ENST00000370576 FSD2A1L4K1 749 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms