RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 SUPT20HQ8NEM7 779 aa4.22□□□□□ -1.73
MCF2-202ENST00000370573 MAP4K1Q92918 833 aa4.22□□□□□ -1.73
MCF2-202ENST00000370573 SRPK1Q96SB4 655 aaKnown RBP4.22□□□□□ -1.73
MCF2-202ENST00000370573 STRBPQ96SI9 672 aaKnown RBP4.22□□□□□ -1.73
MCF2-202ENST00000370573 SYT17Q9BSW7 474 aa4.22□□□□□ -1.73
MCF2-202ENST00000370573 RUSC1Q9BVN2 902 aa4.22□□□□□ -1.73
MCF2-202ENST00000370573 METTL14Q9HCE5 456 aaKnown RBP4.22□□□□□ -1.73
MCF2-202ENST00000370573 SNTG2Q9NY99 539 aa4.22□□□□□ -1.73
MCF2-202ENST00000370573 PALD1Q9ULE6 856 aa4.22□□□□□ -1.73
MCF2-202ENST00000370573 CCDC171Q6TFL3 1326 aa4.22□□□□□ -1.73
MCF2-202ENST00000370573 SCN9AQ15858 1988 aa4.22□□□□□ -1.73
MCF2-202ENST00000370573 MYH13Q9UKX3 1938 aa4.21□□□□□ -1.73
MCF2-202ENST00000370573 LOC102724159A0A0B4J2E5 919 aa4.21□□□□□ -1.73
MCF2-202ENST00000370573 SART1O43290 800 aaKnown RBP4.21□□□□□ -1.73
MCF2-202ENST00000370573 DRD2P14416 443 aa4.21□□□□□ -1.73
MCF2-202ENST00000370573 IBSPP21815 317 aaPredicted RBP4.21□□□□□ -1.73
MCF2-202ENST00000370573 PREPP48147 710 aa4.21□□□□□ -1.73
MCF2-202ENST00000370573 ZNF157P51786 506 aaPredicted RBP4.21□□□□□ -1.73
MCF2-202ENST00000370573 DYNLL1P63167 89 aaKnown RBP4.21□□□□□ -1.73
MCF2-202ENST00000370573 AMPD3Q01432 767 aa4.21□□□□□ -1.73
MCF2-202ENST00000370573 PWP2Q15269 919 aaKnown RBP4.21□□□□□ -1.73
MCF2-202ENST00000370573 ZNF423Q2M1K9 1284 aa4.21□□□□□ -1.73
MCF2-202ENST00000370573 DACT2Q5SW24 774 aa4.21□□□□□ -1.73
MCF2-202ENST00000370573 XP32Q5T750 250 aa4.21□□□□□ -1.73
MCF2-202ENST00000370573 RNF187Q5TA31 235 aaPredicted RBP4.21□□□□□ -1.73
MCF2-202ENST00000370573 TTLL5Q6EMB2 1281 aa4.21□□□□□ -1.73
MCF2-202ENST00000370573 Q6ZS46 218 aa4.21□□□□□ -1.73
MCF2-202ENST00000370573 C12orf50Q8NA57 414 aaPredicted RBP4.21□□□□□ -1.73
MCF2-202ENST00000370573 MIGA1Q8NAN2 632 aa4.21□□□□□ -1.73
MCF2-202ENST00000370573 HNRNPLLQ8WVV9 542 aaKnown RBP4.21□□□□□ -1.73
MCF2-202ENST00000370573 WNT8BQ93098 351 aa4.21□□□□□ -1.73
MCF2-202ENST00000370573 SPON2Q9BUD6 331 aa4.21□□□□□ -1.73
MCF2-202ENST00000370573 BRINP2Q9C0B6 783 aa4.21□□□□□ -1.73
MCF2-202ENST00000370573 ARMT1Q9H993 441 aa4.21□□□□□ -1.73
MCF2-202ENST00000370573 STOML1Q9UBI4 398 aa4.21□□□□□ -1.73
MCF2-202ENST00000370573 FAM8A1Q9UBU6 413 aa4.21□□□□□ -1.73
MCF2-202ENST00000370573 EFR3BQ9Y2G0 817 aa4.21□□□□□ -1.73
MCF2-202ENST00000370573 RBM8AQ9Y5S9 174 aaKnown RBP4.21□□□□□ -1.73
MCF2-202ENST00000370573 TAF6LQ9Y6J9 622 aa4.21□□□□□ -1.73
MCF2-202ENST00000370573 FER1L6Q2WGJ9 1857 aa4.21□□□□□ -1.74
MCF2-202ENST00000370573 HMX2A2RU54 273 aa4.21□□□□□ -1.74
MCF2-202ENST00000370573 GPAA1O43292 621 aa4.21□□□□□ -1.74
MCF2-202ENST00000370573 PRKAB2O43741 272 aa4.21□□□□□ -1.74
MCF2-202ENST00000370573 GADD45BO75293 160 aaPredicted RBP4.21□□□□□ -1.74
MCF2-202ENST00000370573 MBD4O95243 580 aa4.21□□□□□ -1.74
MCF2-202ENST00000370573 SSBP05455 408 aaKnown RBP eCLIP4.21□□□□□ -1.74
MCF2-202ENST00000370573 HSPD1P10809 573 aaKnown RBP4.21□□□□□ -1.74
MCF2-202ENST00000370573 HSPA4P34932 840 aa4.21□□□□□ -1.74
MCF2-202ENST00000370573 IARSP41252 1262 aaKnown RBP4.21□□□□□ -1.74
MCF2-202ENST00000370573 NECTIN1Q15223 517 aa4.21□□□□□ -1.74
MCF2-202ENST00000370573 LRRFIP1Q32MZ4 808 aaKnown RBP4.21□□□□□ -1.74
MCF2-202ENST00000370573 PLEKHG6Q3KR16 790 aa4.21□□□□□ -1.74
MCF2-202ENST00000370573 MFSD14BQ5SR56 506 aa4.21□□□□□ -1.74
MCF2-202ENST00000370573 SPTY2D1Q68D10 685 aaPredicted RBP4.21□□□□□ -1.74
MCF2-202ENST00000370573 NAA16Q6N069 864 aaPredicted RBP4.21□□□□□ -1.74
MCF2-202ENST00000370573 LCORLQ8N3X6 602 aa4.21□□□□□ -1.74
MCF2-202ENST00000370573 EAF1Q96JC9 268 aaPredicted RBP4.21□□□□□ -1.74
MCF2-202ENST00000370573 RIOK1Q9BRS2 568 aaKnown RBP4.21□□□□□ -1.74
MCF2-202ENST00000370573 CEP41Q9BYV8 373 aa4.21□□□□□ -1.74
MCF2-202ENST00000370573 TAOK3Q9H2K8 898 aa4.21□□□□□ -1.74
MCF2-202ENST00000370573 KCNF1Q9H3M0 494 aa4.21□□□□□ -1.74
MCF2-202ENST00000370573 UPF2Q9HAU5 1272 aaKnown RBP4.21□□□□□ -1.74
MCF2-202ENST00000370573 GINM1Q9NU53 330 aa4.21□□□□□ -1.74
MCF2-202ENST00000370573 ZNF646O15015 1829 aaPredicted RBP4.21□□□□□ -1.74
MCF2-202ENST00000370573 LOC100289279A0A1B0GTE1 492 aa4.2□□□□□ -1.74
MCF2-202ENST00000370573 CCDC85CA6NKD9 419 aa4.2□□□□□ -1.74
MCF2-202ENST00000370573 GSG1L2A8MUP6 293 aa4.2□□□□□ -1.74
MCF2-202ENST00000370573 EPB41L2O43491 1005 aaKnown RBP4.2□□□□□ -1.74
MCF2-202ENST00000370573 ECEL1O95672 775 aa4.2□□□□□ -1.74
MCF2-202ENST00000370573 YBX3P16989 372 aaKnown RBP eCLIP4.2□□□□□ -1.74
MCF2-202ENST00000370573 PCDH1Q08174 1060 aa4.2□□□□□ -1.74
MCF2-202ENST00000370573 RAB33AQ14088 237 aa4.2□□□□□ -1.74
MCF2-202ENST00000370573 STRIP1Q5VSL9 837 aa4.2□□□□□ -1.74
MCF2-202ENST00000370573 CREB3L3Q68CJ9 461 aa4.2□□□□□ -1.74
MCF2-202ENST00000370573 FDX2Q6P4F2 183 aa4.2□□□□□ -1.74
MCF2-202ENST00000370573 ZGPATQ8N5A5 531 aaKnown RBP4.2□□□□□ -1.74
MCF2-202ENST00000370573 TBC1D22AQ8WUA7 517 aa4.2□□□□□ -1.74
MCF2-202ENST00000370573 MKL1Q969V6 931 aa4.2□□□□□ -1.74
MCF2-202ENST00000370573 IL17RAQ96F46 866 aa4.2□□□□□ -1.74
MCF2-202ENST00000370573 SEC16BQ96JE7 1060 aa4.2□□□□□ -1.74
MCF2-202ENST00000370573 DSCC1Q9BVC3 393 aa4.2□□□□□ -1.74
MCF2-202ENST00000370573 BCO2Q9BYV7 579 aa4.2□□□□□ -1.74
MCF2-202ENST00000370573 RNF208Q9H0X6 261 aa4.2□□□□□ -1.74
MCF2-202ENST00000370573 VPS33BQ9H267 617 aa4.2□□□□□ -1.74
MCF2-202ENST00000370573 CLEC4MQ9H2X3 399 aaPredicted RBP4.2□□□□□ -1.74
MCF2-202ENST00000370573 G3BP2Q9UN86 482 aaKnown RBP4.2□□□□□ -1.74
MCF2-202ENST00000370573 SNX14Q9Y5W7 946 aa4.2□□□□□ -1.74
MCF2-202ENST00000370573 ARFGEF1Q9Y6D6 1849 aa4.2□□□□□ -1.74
MCF2-202ENST00000370573 MINDY4BA8MYZ0 360 aa4.2□□□□□ -1.74
MCF2-202ENST00000370573 F8W031 263 aaPredicted RBP4.2□□□□□ -1.74
MCF2-202ENST00000370573 PSMD14O00487 310 aa4.2□□□□□ -1.74
MCF2-202ENST00000370573 SLC27A2O14975 620 aa4.2□□□□□ -1.74
MCF2-202ENST00000370573 DHX15O43143 795 aaKnown RBP4.2□□□□□ -1.74
MCF2-202ENST00000370573 RAD17O75943 681 aa4.2□□□□□ -1.74
MCF2-202ENST00000370573 FGAP02671 866 aa4.2□□□□□ -1.74
MCF2-202ENST00000370573 VIL1P09327 827 aaKnown RBP4.2□□□□□ -1.74
MCF2-202ENST00000370573 BMP3P12645 472 aa4.2□□□□□ -1.74
MCF2-202ENST00000370573 FKBP1AP62942 108 aaKnown RBP4.2□□□□□ -1.74
MCF2-202ENST00000370573 PLEKHG4Q58EX7 1191 aa4.2□□□□□ -1.74
MCF2-202ENST00000370573 ARHGAP27Q6ZUM4 889 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms