RNA–Protein interactions for RNA: ENST00000369407.3

PHGDH-201, Transcript of phosphoglycerate dehydrogenase, humanhuman

TSL 2

Gene PHGDH, Length 3,180 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-201ENST00000369407 MCM8Q9UJA3 840 aa13.51□□□□□ -0.25
PHGDH-201ENST00000369407 TPX2Q9ULW0 747 aaKnown RBP13.51□□□□□ -0.25
PHGDH-201ENST00000369407 CICQ96RK0 1608 aaPredicted RBP13.5□□□□□ -0.25
PHGDH-201ENST00000369407 BCORQ6W2J9 1755 aa13.5□□□□□ -0.25
PHGDH-201ENST00000369407 DAPK3O43293 454 aa13.5□□□□□ -0.25
PHGDH-201ENST00000369407 FGRP09769 529 aa13.5□□□□□ -0.25
PHGDH-201ENST00000369407 GRB10Q13322 594 aa13.5□□□□□ -0.25
PHGDH-201ENST00000369407 NAB2Q15742 525 aa13.5□□□□□ -0.25
PHGDH-201ENST00000369407 SNCBQ16143 134 aa13.5□□□□□ -0.25
PHGDH-201ENST00000369407 LRRC55Q6ZSA7 311 aa13.5□□□□□ -0.25
PHGDH-201ENST00000369407 FUKQ8N0W3 1084 aa13.5□□□□□ -0.25
PHGDH-201ENST00000369407 WHAMMQ8TF30 809 aa13.5□□□□□ -0.25
PHGDH-201ENST00000369407 RAPGEF5Q92565 580 aa13.5□□□□□ -0.25
PHGDH-201ENST00000369407 CALML4Q96GE6 196 aa13.5□□□□□ -0.25
PHGDH-201ENST00000369407 CELF4Q9BZC1 486 aaKnown RBP13.5□□□□□ -0.25
PHGDH-201ENST00000369407 AMACRQ9UHK6 382 aa13.5□□□□□ -0.25
PHGDH-201ENST00000369407 NIP7Q9Y221 180 aaKnown RBP eCLIP13.5□□□□□ -0.25
PHGDH-201ENST00000369407 CCDC189A1A4V9 331 aa13.5□□□□□ -0.25
PHGDH-201ENST00000369407 SMIM23A6NLE4 172 aa13.5□□□□□ -0.25
PHGDH-201ENST00000369407 TMCO5BA8MYB1 307 aa13.5□□□□□ -0.25
PHGDH-201ENST00000369407 HSPA9P38646 679 aaKnown RBP13.5□□□□□ -0.25
PHGDH-201ENST00000369407 ADAT2Q7Z6V5 191 aaKnown RBP13.5□□□□□ -0.25
PHGDH-201ENST00000369407 YTHDF3Q7Z739 585 aaKnown RBP13.5□□□□□ -0.25
PHGDH-201ENST00000369407 TBCKQ8TEA7 893 aa13.5□□□□□ -0.25
PHGDH-201ENST00000369407 TAF4BQ92750 862 aa13.5□□□□□ -0.25
PHGDH-201ENST00000369407 NSUN4Q96CB9 384 aaKnown RBP13.5□□□□□ -0.25
PHGDH-201ENST00000369407 CDK5RAP3Q96JB5 506 aa13.5□□□□□ -0.25
PHGDH-201ENST00000369407 ATXN2Q99700 1313 aaKnown RBP13.49□□□□□ -0.25
PHGDH-201ENST00000369407 SMCO2A6NFE2 343 aa13.49□□□□□ -0.25
PHGDH-201ENST00000369407 ORC4O43929 436 aa13.49□□□□□ -0.25
PHGDH-201ENST00000369407 ACTN1P12814 892 aa13.49□□□□□ -0.25
PHGDH-201ENST00000369407 AMPD3Q01432 767 aa13.49□□□□□ -0.25
PHGDH-201ENST00000369407 PREPLQ4J6C6 727 aaPredicted RBP13.49□□□□□ -0.25
PHGDH-201ENST00000369407 ANKRD20A8PQ5CZ79 823 aa13.49□□□□□ -0.25
PHGDH-201ENST00000369407 CD302Q8IX05 232 aa13.49□□□□□ -0.25
PHGDH-201ENST00000369407 MREGQ8N565 214 aa13.49□□□□□ -0.25
PHGDH-201ENST00000369407 RNF10Q8N5U6 811 aaKnown RBP13.49□□□□□ -0.25
PHGDH-201ENST00000369407 FAM84BQ96KN1 310 aaPredicted RBP13.49□□□□□ -0.25
PHGDH-201ENST00000369407 BARHL2Q9NY43 387 aa13.49□□□□□ -0.25
PHGDH-201ENST00000369407 COL4A1P02462 1669 aa13.49□□□□□ -0.25
PHGDH-201ENST00000369407 H0YGN5 161 aa13.49□□□□□ -0.25
PHGDH-201ENST00000369407 TNNC1P63316 161 aa13.49□□□□□ -0.25
PHGDH-201ENST00000369407 MAP2K1Q02750 393 aaPredicted RBP13.49□□□□□ -0.25
PHGDH-201ENST00000369407 KLHL30Q0D2K2 578 aa13.49□□□□□ -0.25
PHGDH-201ENST00000369407 SEMA3FQ13275 785 aa13.49□□□□□ -0.25
PHGDH-201ENST00000369407 BYSLQ13895 437 aaKnown RBP13.49□□□□□ -0.25
PHGDH-201ENST00000369407 RPS6KA1Q15418 735 aa13.49□□□□□ -0.25
PHGDH-201ENST00000369407 CPLX4Q7Z7G2 160 aa13.49□□□□□ -0.25
PHGDH-201ENST00000369407 PNMA5Q96PV4 448 aa13.49□□□□□ -0.25
PHGDH-201ENST00000369407 CRNKL1Q9BZJ0 848 aaKnown RBP13.49□□□□□ -0.25
PHGDH-201ENST00000369407 MKNK2Q9HBH9 465 aa13.49□□□□□ -0.25
PHGDH-201ENST00000369407 SLC12A6Q9UHW9 1150 aa13.49□□□□□ -0.25
PHGDH-201ENST00000369407 NFS1Q9Y697 457 aa13.49□□□□□ -0.25
PHGDH-201ENST00000369407 ADAMTSL3P82987 1691 aa13.49□□□□□ -0.25
PHGDH-201ENST00000369407 TRAPPC3O43617 180 aa13.48□□□□□ -0.25
PHGDH-201ENST00000369407 COPB2P35606 906 aa13.48□□□□□ -0.25
PHGDH-201ENST00000369407 SCTRP47872 440 aa13.48□□□□□ -0.25
PHGDH-201ENST00000369407 CAVIN4Q5BKX8 364 aa13.48□□□□□ -0.25
PHGDH-201ENST00000369407 CCDC24Q8N4L8 307 aa13.48□□□□□ -0.25
PHGDH-201ENST00000369407 DDX12PQ92771 950 aa13.48□□□□□ -0.25
PHGDH-201ENST00000369407 DOCK2Q92608 1830 aa13.48□□□□□ -0.25
PHGDH-201ENST00000369407 SART1O43290 800 aaKnown RBP13.48□□□□□ -0.25
PHGDH-201ENST00000369407 SERPING1P05155 500 aa13.48□□□□□ -0.25
PHGDH-201ENST00000369407 NONOQ15233 471 aaKnown RBP eCLIP13.48□□□□□ -0.25
PHGDH-201ENST00000369407 KRT71Q3SY84 523 aa13.48□□□□□ -0.25
PHGDH-201ENST00000369407 PPP4R3AQ6IN85 833 aa13.48□□□□□ -0.25
PHGDH-201ENST00000369407 USP17L2Q6R6M4 530 aa13.48□□□□□ -0.25
PHGDH-201ENST00000369407 UBA5Q9GZZ9 404 aa13.48□□□□□ -0.25
PHGDH-201ENST00000369407 PLCB1Q9NQ66 1216 aa13.48□□□□□ -0.25
PHGDH-201ENST00000369407 SAP30BPQ9UHR5 308 aaKnown RBP13.48□□□□□ -0.25
PHGDH-201ENST00000369407 TSKSQ9UJT2 592 aa13.48□□□□□ -0.25
PHGDH-201ENST00000369407 TDP2O95551 362 aa13.48□□□□□ -0.25
PHGDH-201ENST00000369407 SMIM5Q71RC9 77 aa13.48□□□□□ -0.25
PHGDH-201ENST00000369407 CACNA2D3Q8IZS8 1091 aa13.48□□□□□ -0.25
PHGDH-201ENST00000369407 LARP4BQ92615 738 aaKnown RBP13.48□□□□□ -0.25
PHGDH-201ENST00000369407 PAGR1Q9BTK6 254 aa13.48□□□□□ -0.25
PHGDH-201ENST00000369407 ISCUQ9H1K1 167 aa13.48□□□□□ -0.25
PHGDH-201ENST00000369407 ATP6V0A2Q9Y487 856 aa13.48□□□□□ -0.25
PHGDH-201ENST00000369407 NPHP3-ACAD11A0A0J9YXS1 232 aa13.47□□□□□ -0.25
PHGDH-201ENST00000369407 SSU72P8A0A1W2PR75 194 aa13.47□□□□□ -0.25
PHGDH-201ENST00000369407 KLRF2D3W0D1 207 aa13.47□□□□□ -0.25
PHGDH-201ENST00000369407 TTI1O43156 1089 aa13.47□□□□□ -0.25
PHGDH-201ENST00000369407 SLC37A4O43826 429 aa13.47□□□□□ -0.25
PHGDH-201ENST00000369407 ACCSLQ4AC99 568 aa13.47□□□□□ -0.25
PHGDH-201ENST00000369407 BICDL1Q6ZP65 573 aa13.47□□□□□ -0.25
PHGDH-201ENST00000369407 NEK8Q86SG6 692 aa13.47□□□□□ -0.25
PHGDH-201ENST00000369407 SLC51AQ86UW1 340 aa13.47□□□□□ -0.25
PHGDH-201ENST00000369407 UHMK1Q8TAS1 419 aaKnown RBP13.47□□□□□ -0.25
PHGDH-201ENST00000369407 CUEDC2Q9H467 287 aa13.47□□□□□ -0.25
PHGDH-201ENST00000369407 ZHX3Q9H4I2 956 aa13.47□□□□□ -0.25
PHGDH-201ENST00000369407 GGT7Q9UJ14 662 aa13.47□□□□□ -0.25
PHGDH-201ENST00000369407 MYH3P11055 1940 aa13.47□□□□□ -0.25
PHGDH-201ENST00000369407 TSPY3P0CV98 308 aa13.47□□□□□ -0.25
PHGDH-201ENST00000369407 TSPY8P0CW00 308 aa13.47□□□□□ -0.25
PHGDH-201ENST00000369407 PPP2R2AP63151 447 aa13.47□□□□□ -0.25
PHGDH-201ENST00000369407 NAA25Q14CX7 972 aa13.47□□□□□ -0.25
PHGDH-201ENST00000369407 SLC18A3Q16572 532 aa13.47□□□□□ -0.25
PHGDH-201ENST00000369407 UNC13DQ70J99 1090 aa13.47□□□□□ -0.25
PHGDH-201ENST00000369407 ANKS1AQ92625 1134 aa13.47□□□□□ -0.25
PHGDH-201ENST00000369407 VEZTQ9HBM0 779 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms