RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 CEP128Q6ZU80 1094 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 SND1Q7KZF4 910 aaKnown RBP eCLIP12.66□□□□□ -0.38
SYNE1-204ENST00000367248 KLHL7Q8IXQ5 586 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 KCNH4Q9UQ05 1017 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 XPAP23025 273 aaPredicted RBP12.65□□□□□ -0.38
SYNE1-204ENST00000367248 POLR2BP30876 1174 aaKnown RBP12.65□□□□□ -0.38
SYNE1-204ENST00000367248 CTTNQ14247 550 aaKnown RBP12.65□□□□□ -0.38
SYNE1-204ENST00000367248 KRT81Q14533 505 aa12.65□□□□□ -0.38
SYNE1-204ENST00000367248 NME8Q8N427 588 aa12.65□□□□□ -0.38
SYNE1-204ENST00000367248 MAIP1Q8WWC4 291 aa12.65□□□□□ -0.38
SYNE1-204ENST00000367248 EMILIN3Q9NT22 766 aa12.65□□□□□ -0.38
SYNE1-204ENST00000367248 GJB4Q9NTQ9 266 aa12.65□□□□□ -0.38
SYNE1-204ENST00000367248 AMFRQ9UKV5 643 aa12.65□□□□□ -0.38
SYNE1-204ENST00000367248 PCDHA6Q9UN73 950 aa12.65□□□□□ -0.38
SYNE1-204ENST00000367248 PCDHA8Q9Y5H6 950 aa12.65□□□□□ -0.38
SYNE1-204ENST00000367248 BPIFB4P59827 614 aa12.65□□□□□ -0.38
SYNE1-204ENST00000367248 CFAP221Q4G0U5 840 aa12.65□□□□□ -0.38
SYNE1-204ENST00000367248 DAAM2Q86T65 1068 aa12.65□□□□□ -0.38
SYNE1-204ENST00000367248 SGMS1Q86VZ5 419 aa12.65□□□□□ -0.38
SYNE1-204ENST00000367248 TRIM50Q86XT4 487 aa12.65□□□□□ -0.38
SYNE1-204ENST00000367248 CCT6BQ92526 530 aa12.65□□□□□ -0.38
SYNE1-204ENST00000367248 SNX25Q9H3E2 840 aa12.65□□□□□ -0.38
SYNE1-204ENST00000367248 POLD4Q9HCU8 107 aa12.65□□□□□ -0.38
SYNE1-204ENST00000367248 FAM184BQ9ULE4 1060 aa12.65□□□□□ -0.38
SYNE1-204ENST00000367248 QRICH1Q2TAL8 776 aa12.65□□□□□ -0.38
SYNE1-204ENST00000367248 NSUN6Q8TEA1 469 aaKnown RBP12.65□□□□□ -0.38
SYNE1-204ENST00000367248 LY9Q9HBG7 655 aa12.65□□□□□ -0.38
SYNE1-204ENST00000367248 KCNK9Q9NPC2 374 aa12.65□□□□□ -0.38
SYNE1-204ENST00000367248 NSFP46459 744 aaKnown RBP12.65□□□□□ -0.38
SYNE1-204ENST00000367248 MTMR2Q13614 643 aa12.65□□□□□ -0.38
SYNE1-204ENST00000367248 ZNF658Q5TYW1 1059 aaPredicted RBP12.65□□□□□ -0.38
SYNE1-204ENST00000367248 SMYD4Q8IYR2 804 aaPredicted RBP12.65□□□□□ -0.38
SYNE1-204ENST00000367248 PARVGQ9HBI0 331 aa12.65□□□□□ -0.38
SYNE1-204ENST00000367248 AFG3L2Q9Y4W6 797 aa12.65□□□□□ -0.38
SYNE1-204ENST00000367248 CLIC2O15247 247 aa12.65□□□□□ -0.39
SYNE1-204ENST00000367248 FDX1P10109 184 aa12.65□□□□□ -0.39
SYNE1-204ENST00000367248 FCER1AP12319 257 aa12.65□□□□□ -0.39
SYNE1-204ENST00000367248 STXBP2Q15833 593 aa12.65□□□□□ -0.39
SYNE1-204ENST00000367248 TWF2Q6IBS0 349 aaKnown RBP12.65□□□□□ -0.39
SYNE1-204ENST00000367248 TRIM58Q8NG06 486 aa12.65□□□□□ -0.39
SYNE1-204ENST00000367248 UBLCP1Q8WVY7 318 aaPredicted RBP12.65□□□□□ -0.39
SYNE1-204ENST00000367248 DESI2Q9BSY9 194 aa12.65□□□□□ -0.39
SYNE1-204ENST00000367248 ABCB11O95342 1321 aa12.65□□□□□ -0.39
SYNE1-204ENST00000367248 MYL7Q01449 175 aa12.64□□□□□ -0.39
SYNE1-204ENST00000367248 CCDC105Q8IYK2 499 aa12.64□□□□□ -0.39
SYNE1-204ENST00000367248 PIDD1Q9HB75 910 aa12.64□□□□□ -0.39
SYNE1-204ENST00000367248 MAGED2Q9UNF1 606 aaPredicted RBP12.64□□□□□ -0.39
SYNE1-204ENST00000367248 FRMPD1Q5SYB0 1578 aa12.64□□□□□ -0.39
SYNE1-204ENST00000367248 PSMD14O00487 310 aa12.64□□□□□ -0.39
SYNE1-204ENST00000367248 PTPREP23469 700 aa12.64□□□□□ -0.39
SYNE1-204ENST00000367248 MFAP3P55082 362 aa12.64□□□□□ -0.39
SYNE1-204ENST00000367248 PTK2Q05397 1052 aa12.64□□□□□ -0.39
SYNE1-204ENST00000367248 SCARA5Q6ZMJ2 495 aa12.64□□□□□ -0.39
SYNE1-204ENST00000367248 DSTYKQ6XUX3 929 aa12.64□□□□□ -0.39
SYNE1-204ENST00000367248 ENTPD3O75355 529 aa12.64□□□□□ -0.39
SYNE1-204ENST00000367248 ABCD1P33897 745 aa12.64□□□□□ -0.39
SYNE1-204ENST00000367248 JAK3P52333 1124 aa12.64□□□□□ -0.39
SYNE1-204ENST00000367248 MAN2A1Q16706 1144 aa12.64□□□□□ -0.39
SYNE1-204ENST00000367248 SMC1BQ8NDV3 1235 aa12.64□□□□□ -0.39
SYNE1-204ENST00000367248 OSBPL5Q9H0X9 879 aaPredicted RBP12.64□□□□□ -0.39
SYNE1-204ENST00000367248 DIP2AQ14689 1571 aa12.63□□□□□ -0.39
SYNE1-204ENST00000367248 MAN1A1P33908 653 aa12.63□□□□□ -0.39
SYNE1-204ENST00000367248 DNAJC21Q5F1R6 531 aaKnown RBP12.63□□□□□ -0.39
SYNE1-204ENST00000367248 DCCP43146 1447 aa12.63□□□□□ -0.39
SYNE1-204ENST00000367248 SFI1A8K8P3 1242 aa12.63□□□□□ -0.39
SYNE1-204ENST00000367248 HOXA7P31268 230 aaPredicted RBP12.63□□□□□ -0.39
SYNE1-204ENST00000367248 PSMD2Q13200 908 aa12.63□□□□□ -0.39
SYNE1-204ENST00000367248 IFT20Q8IY31 132 aa12.63□□□□□ -0.39
SYNE1-204ENST00000367248 ZNF512BQ96KM6 892 aaPredicted RBP12.63□□□□□ -0.39
SYNE1-204ENST00000367248 RPAP3Q9H6T3 665 aaPredicted RBP12.63□□□□□ -0.39
SYNE1-204ENST00000367248 RRAGCQ9HB90 399 aa12.63□□□□□ -0.39
SYNE1-204ENST00000367248 THNSL1Q8IYQ7 743 aa12.63□□□□□ -0.39
SYNE1-204ENST00000367248 TBC1D31Q96DN5 1066 aa12.63□□□□□ -0.39
SYNE1-204ENST00000367248 TBC1D22BQ9NU19 505 aa12.63□□□□□ -0.39
SYNE1-204ENST00000367248 FEZ2Q9UHY8 353 aaPredicted RBP12.63□□□□□ -0.39
SYNE1-204ENST00000367248 UTP11Q9Y3A2 253 aaKnown RBP12.63□□□□□ -0.39
SYNE1-204ENST00000367248 RIOK3O14730 519 aaKnown RBP12.63□□□□□ -0.39
SYNE1-204ENST00000367248 C1orf228Q6PIY5 440 aa12.63□□□□□ -0.39
SYNE1-204ENST00000367248 HHIPL2Q6UWX4 724 aa12.63□□□□□ -0.39
SYNE1-204ENST00000367248 PHLDB2Q86SQ0 1253 aa12.63□□□□□ -0.39
SYNE1-204ENST00000367248 ENOX1Q8TC92 643 aaKnown RBP12.63□□□□□ -0.39
SYNE1-204ENST00000367248 PARD3BQ8TEW8 1205 aa12.63□□□□□ -0.39
SYNE1-204ENST00000367248 ANKRD36BP1Q96IX9 119 aa12.63□□□□□ -0.39
SYNE1-204ENST00000367248 AFPP02771 609 aaKnown RBP12.63□□□□□ -0.39
SYNE1-204ENST00000367248 ARHGAP4P98171 946 aa12.63□□□□□ -0.39
SYNE1-204ENST00000367248 C6orf163Q5TEZ5 329 aa12.63□□□□□ -0.39
SYNE1-204ENST00000367248 CEP63Q96MT8 703 aa12.63□□□□□ -0.39
SYNE1-204ENST00000367248 UBE2Q2LH0YL09 131 aa12.63□□□□□ -0.39
SYNE1-204ENST00000367248 RFX5P48382 616 aaPredicted RBP12.63□□□□□ -0.39
SYNE1-204ENST00000367248 HADHQ16836 314 aaKnown RBP12.63□□□□□ -0.39
SYNE1-204ENST00000367248 TSGA10IPQ3SY00 556 aa12.63□□□□□ -0.39
SYNE1-204ENST00000367248 IFNB1P01574 187 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 CD58P19256 250 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 CDC27P30260 824 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 CASP14P31944 242 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 HDXQ7Z353 690 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 NKIRAS1Q9NYS0 192 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 LAMC1P11047 1609 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 GOLGA8IPA6NC78 632 aa12.62□□□□□ -0.39
SYNE1-204ENST00000367248 GOLGA8JA6NMD2 632 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms