RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 EEPD1Q7L9B9 569 aa22.37■■□□□ 1.17
CLN3-205ENST00000359984 ZNF467Q7Z7K2 595 aaPredicted RBP22.37■■□□□ 1.17
CLN3-205ENST00000359984 RASSF8Q8NHQ8 419 aa22.37■■□□□ 1.17
CLN3-205ENST00000359984 PYM1Q9BRP8 204 aaKnown RBP22.37■■□□□ 1.17
CLN3-205ENST00000359984 USP25Q9UHP3 1055 aa22.37■■□□□ 1.17
CLN3-205ENST00000359984 DDX39AO00148 427 aaKnown RBP22.36■■□□□ 1.17
CLN3-205ENST00000359984 SLFN14P0C7P3 912 aa22.36■■□□□ 1.17
CLN3-205ENST00000359984 KCNA2P16389 499 aa22.36■■□□□ 1.17
CLN3-205ENST00000359984 CTGFP29279 349 aa22.36■■□□□ 1.17
CLN3-205ENST00000359984 GRB10Q13322 594 aa22.36■■□□□ 1.17
CLN3-205ENST00000359984 NPLOC4Q8TAT6 608 aa22.36■■□□□ 1.17
CLN3-205ENST00000359984 LRRC15Q8TF66 581 aa22.36■■□□□ 1.17
CLN3-205ENST00000359984 CALML4Q96GE6 196 aa22.36■■□□□ 1.17
CLN3-205ENST00000359984 PNMA5Q96PV4 448 aa22.36■■□□□ 1.17
CLN3-205ENST00000359984 SYCE3A1L190 88 aa22.35■■□□□ 1.17
CLN3-205ENST00000359984 CTAGE5O15320 804 aa22.35■■□□□ 1.17
CLN3-205ENST00000359984 CHMP2AO43633 222 aa22.35■■□□□ 1.17
CLN3-205ENST00000359984 PLCG1P19174 1290 aa22.35■■□□□ 1.17
CLN3-205ENST00000359984 MAP2K5Q13163 448 aa22.35■■□□□ 1.17
CLN3-205ENST00000359984 NAALADL2Q58DX5 795 aa22.35■■□□□ 1.17
CLN3-205ENST00000359984 RBM43Q6ZSC3 357 aaKnown RBP22.35■■□□□ 1.17
CLN3-205ENST00000359984 ARMCX2Q7L311 632 aa22.35■■□□□ 1.17
CLN3-205ENST00000359984 ERMNQ8TAM6 284 aa22.35■■□□□ 1.17
CLN3-205ENST00000359984 MAML3Q96JK9 1138 aa22.35■■□□□ 1.17
CLN3-205ENST00000359984 CFHR5Q9BXR6 569 aa22.35■■□□□ 1.17
CLN3-205ENST00000359984 RNF186Q9NXI6 227 aa22.35■■□□□ 1.17
CLN3-205ENST00000359984 ZNF236Q9UL36 1845 aa22.35■■□□□ 1.17
CLN3-205ENST00000359984 LRRC37A2A6NM11 1700 aa22.35■■□□□ 1.17
CLN3-205ENST00000359984 TRPA1O75762 1119 aa22.34■■□□□ 1.17
CLN3-205ENST00000359984 LETM1O95202 739 aaPredicted RBP22.34■■□□□ 1.17
CLN3-205ENST00000359984 CCT6AP40227 531 aaKnown RBP22.34■■□□□ 1.17
CLN3-205ENST00000359984 STAT6P42226 847 aa22.34■■□□□ 1.17
CLN3-205ENST00000359984 ECM1Q16610 540 aa22.34■■□□□ 1.17
CLN3-205ENST00000359984 PDXDC2PQ6P474 469 aa22.34■■□□□ 1.17
CLN3-205ENST00000359984 CKAP2LQ8IYA6 745 aa22.34■■□□□ 1.17
CLN3-205ENST00000359984 USP6NLQ92738 828 aa22.34■■□□□ 1.17
CLN3-205ENST00000359984 PLXNA1Q9UIW2 1896 aa22.34■■□□□ 1.17
CLN3-205ENST00000359984 TNPO2O14787 897 aaKnown RBP22.34■■□□□ 1.17
CLN3-205ENST00000359984 MED24O75448 989 aa22.34■■□□□ 1.17
CLN3-205ENST00000359984 SP2Q02086 613 aa22.34■■□□□ 1.17
CLN3-205ENST00000359984 HYIQ5T013 277 aa22.34■■□□□ 1.17
CLN3-205ENST00000359984 MAMDC4Q6UXC1 1216 aa22.34■■□□□ 1.17
CLN3-205ENST00000359984 ELOA2Q8IYF1 753 aaPredicted RBP22.34■■□□□ 1.17
CLN3-205ENST00000359984 CEP57L1Q8IYX8 460 aa22.34■■□□□ 1.17
CLN3-205ENST00000359984 EIF2AK1Q9BQI3 630 aaKnown RBP22.34■■□□□ 1.17
CLN3-205ENST00000359984 BCAS3Q9H6U6 928 aa22.34■■□□□ 1.17
CLN3-205ENST00000359984 SLC5A4Q9NY91 659 aa22.34■■□□□ 1.17
CLN3-205ENST00000359984 GJD2Q9UKL4 321 aa22.34■■□□□ 1.17
CLN3-205ENST00000359984 STK24Q9Y6E0 443 aa22.34■■□□□ 1.17
CLN3-205ENST00000359984 FOXN1O15353 648 aa22.33■■□□□ 1.17
CLN3-205ENST00000359984 SLC26A4O43511 780 aa22.33■■□□□ 1.17
CLN3-205ENST00000359984 LACTBP83111 547 aaPredicted RBP22.33■■□□□ 1.17
CLN3-205ENST00000359984 TMEM119Q4V9L6 283 aa22.33■■□□□ 1.17
CLN3-205ENST00000359984 FBXO16Q8IX29 292 aaPredicted RBP22.33■■□□□ 1.17
CLN3-205ENST00000359984 ERCC4Q92889 916 aaPredicted RBP22.33■■□□□ 1.17
CLN3-205ENST00000359984 NFASCO94856 1347 aa22.33■■□□□ 1.16
CLN3-205ENST00000359984 KIAA1217Q5T5P2 1943 aa22.33■■□□□ 1.16
CLN3-205ENST00000359984 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.32■■□□□ 1.16
CLN3-205ENST00000359984 SPATA31C1P0DKV0 1188 aa22.32■■□□□ 1.16
CLN3-205ENST00000359984 RPA1P27694 616 aa22.32■■□□□ 1.16
CLN3-205ENST00000359984 MDM2Q00987 491 aaPredicted RBP22.32■■□□□ 1.16
CLN3-205ENST00000359984 HAUS3Q68CZ6 603 aa22.32■■□□□ 1.16
CLN3-205ENST00000359984 KANK3Q6NY19 840 aa22.32■■□□□ 1.16
CLN3-205ENST00000359984 CATSPER3Q86XQ3 398 aa22.32■■□□□ 1.16
CLN3-205ENST00000359984 GRAMD1CQ8IYS0 662 aa22.32■■□□□ 1.16
CLN3-205ENST00000359984 PAGE5Q96GU1 130 aa22.32■■□□□ 1.16
CLN3-205ENST00000359984 CDK5RAP3Q96JB5 506 aa22.32■■□□□ 1.16
CLN3-205ENST00000359984 ARHGAP39Q9C0H5 1083 aa22.32■■□□□ 1.16
CLN3-205ENST00000359984 KDM3AQ9Y4C1 1321 aa22.32■■□□□ 1.16
CLN3-205ENST00000359984 POTEB3A0JP26 581 aa22.32■■□□□ 1.16
CLN3-205ENST00000359984 CCNE2O96020 404 aa22.32■■□□□ 1.16
CLN3-205ENST00000359984 HOXC6P09630 235 aa22.32■■□□□ 1.16
CLN3-205ENST00000359984 PSMC4P43686 418 aa22.32■■□□□ 1.16
CLN3-205ENST00000359984 EPHA7Q15375 998 aa22.32■■□□□ 1.16
CLN3-205ENST00000359984 POTEBQ6S5H4 581 aa22.32■■□□□ 1.16
CLN3-205ENST00000359984 SH3RF1Q7Z6J0 888 aa22.32■■□□□ 1.16
CLN3-205ENST00000359984 HSD17B14Q9BPX1 270 aa22.32■■□□□ 1.16
CLN3-205ENST00000359984 SENP7Q9BQF6 1050 aa22.32■■□□□ 1.16
CLN3-205ENST00000359984 POLR3CQ9BUI4 534 aaPredicted RBP22.32■■□□□ 1.16
CLN3-205ENST00000359984 RGL1Q9NZL6 768 aa22.32■■□□□ 1.16
CLN3-205ENST00000359984 DOCK3Q8IZD9 2030 aa22.32■■□□□ 1.16
CLN3-205ENST00000359984 TGFB3P10600 412 aa22.31■■□□□ 1.16
CLN3-205ENST00000359984 FCGRTP55899 365 aa22.31■■□□□ 1.16
CLN3-205ENST00000359984 ZNF445P59923 1031 aa22.31■■□□□ 1.16
CLN3-205ENST00000359984 KRT76Q01546 638 aa22.31■■□□□ 1.16
CLN3-205ENST00000359984 PNOCQ13519 176 aa22.31■■□□□ 1.16
CLN3-205ENST00000359984 MIER3Q7Z3K6 550 aa22.31■■□□□ 1.16
CLN3-205ENST00000359984 SOCS4Q8WXH5 440 aa22.31■■□□□ 1.16
CLN3-205ENST00000359984 TRIM47Q96LD4 638 aa22.31■■□□□ 1.16
CLN3-205ENST00000359984 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.31■■□□□ 1.16
CLN3-205ENST00000359984 KIAA1024Q9UPX6 916 aa22.31■■□□□ 1.16
CLN3-205ENST00000359984 MCM3APO60318 1980 aa22.3■■□□□ 1.16
CLN3-205ENST00000359984 SNAI1O95863 264 aaPredicted RBP22.3■■□□□ 1.16
CLN3-205ENST00000359984 PRKCSHP14314 528 aaPredicted RBP22.3■■□□□ 1.16
CLN3-205ENST00000359984 AFMP43652 599 aa22.3■■□□□ 1.16
CLN3-205ENST00000359984 CYP4A11Q02928 519 aa22.3■■□□□ 1.16
CLN3-205ENST00000359984 KCNK18Q7Z418 384 aa22.3■■□□□ 1.16
CLN3-205ENST00000359984 STAMQ92783 540 aa22.3■■□□□ 1.16
CLN3-205ENST00000359984 DYDC2Q96IM9 177 aa22.3■■□□□ 1.16
CLN3-205ENST00000359984 MTRQ99707 1265 aa22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms