RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 UGCGQ16739 394 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 BRAPQ7Z569 592 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 ZNF579Q8NAF0 562 aaKnown RBP4.56□□□□□ -1.68
LIG4-201ENST00000356922 LEO1Q8WVC0 666 aaPredicted RBP4.56□□□□□ -1.68
LIG4-201ENST00000356922 SOCS4Q8WXH5 440 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 PLIN2Q99541 437 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 UNC45AQ9H3U1 944 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 ABHD16BQ9H3Z7 469 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 ZSCAN16Q9H4T2 348 aaPredicted RBP4.56□□□□□ -1.68
LIG4-201ENST00000356922 TTC12Q9H892 705 aaPredicted RBP4.56□□□□□ -1.68
LIG4-201ENST00000356922 ADD3Q9UEY8 706 aaKnown RBP4.56□□□□□ -1.68
LIG4-201ENST00000356922 FBXO2Q9UK22 296 aaPredicted RBP4.56□□□□□ -1.68
LIG4-201ENST00000356922 RCOR1Q9UKL0 485 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 PCDHA7Q9UN72 937 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 ZNF236Q9UL36 1845 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 GSTTP1A0A1W2PQM5 241 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 RBM47A0AV96 593 aaKnown RBP4.56□□□□□ -1.68
LIG4-201ENST00000356922 DYNC1LI2O43237 492 aaPredicted RBP4.56□□□□□ -1.68
LIG4-201ENST00000356922 CHMP2AO43633 222 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 FARP2O94887 1054 aaPredicted RBP4.56□□□□□ -1.68
LIG4-201ENST00000356922 ZNF76P36508 570 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 NASPP49321 788 aaPredicted RBP4.56□□□□□ -1.68
LIG4-201ENST00000356922 MNX1P50219 401 aaPredicted RBP4.56□□□□□ -1.68
LIG4-201ENST00000356922 PSMC6P62333 389 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 ATP2C1P98194 919 aaPredicted RBP4.56□□□□□ -1.68
LIG4-201ENST00000356922 RILPL1Q5EBL4 403 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 SHC4Q6S5L8 630 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 KCNK18Q7Z418 384 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 PXYLP1Q8TE99 480 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 SLC5A5Q92911 643 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 ZNF577Q9BSK1 485 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 MCOLN1Q9GZU1 580 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 KIF3AQ9Y496 699 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 SYNGAP1Q96PV0 1343 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 VWA3AA6NCI4 1184 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 ASB14A6NK59 587 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 ZNF862O60290 1169 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 NEMFO60524 1076 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 GGPS1O95749 300 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 SPATA31C1P0DKV0 1188 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 NUCB2P80303 420 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 TRAF1Q13077 416 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 FAM177A1Q8N128 213 aaPredicted RBP4.56□□□□□ -1.68
LIG4-201ENST00000356922 SAMD3Q8N6K7 520 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 CSRNP2Q9H175 543 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 GLT8D2Q9H1C3 349 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 BRMS1Q9HCU9 246 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 POLR3EQ9NVU0 708 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 PNMA2Q9UL42 364 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 NCLP19338 710 aaKnown RBP4.56□□□□□ -1.68
LIG4-201ENST00000356922 ICAM3P32942 547 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 TNFAIP2Q03169 654 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 CALCRLQ16602 461 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 DUSP28Q4G0W2 176 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 CTU1Q7Z7A3 348 aaKnown RBP4.56□□□□□ -1.68
LIG4-201ENST00000356922 AFG1LQ8WV93 481 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 GOLPH3LQ9H4A5 285 aa4.56□□□□□ -1.68
LIG4-201ENST00000356922 ADAMTS4O75173 837 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 MED24O75448 989 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 SLITRK3O94933 977 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 HMGCRP04035 888 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 CYP4A11Q02928 519 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 SLC9C1Q4G0N8 1177 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 CELF3Q5SZQ8 465 aaKnown RBP4.55□□□□□ -1.68
LIG4-201ENST00000356922 CCSAPQ6IQ19 270 aaPredicted RBP4.55□□□□□ -1.68
LIG4-201ENST00000356922 CCDC60Q8IWA6 550 aaPredicted RBP4.55□□□□□ -1.68
LIG4-201ENST00000356922 IGSF22Q8N9C0 903 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 KAT2BQ92831 832 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 ZNF333Q96JL9 665 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 DEFB118Q96PH6 123 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 GPR20Q99678 358 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 RNPEPQ9H4A4 650 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 CIZ1Q9ULV3 898 aaPredicted RBP4.55□□□□□ -1.68
LIG4-201ENST00000356922 PCDHA12Q9UN75 941 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 MYH15Q9Y2K3 1946 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 SPTLC2O15270 562 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 SEPT4O43236 478 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 PRPF40AO75400 957 aaKnown RBP4.55□□□□□ -1.68
LIG4-201ENST00000356922 STBD1O95210 358 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 ZNF286BP0CG31 522 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 HOXD10P28358 340 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 TRAPPC10P48553 1259 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 LRCH2Q5VUJ6 765 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 ABHD15Q6UXT9 468 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 CATSPER3Q86XQ3 398 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 BANK1Q8NDB2 785 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 GPRASP2Q96D09 838 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 MTRQ99707 1265 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 HSD17B14Q9BPX1 270 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 PAK6Q9NQU5 681 aaPredicted RBP4.55□□□□□ -1.68
LIG4-201ENST00000356922 GRIN2DO15399 1336 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 SYNRGQ9UMZ2 1314 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 MUC3AQ02505 3323 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 A0A1B0GVL5 298 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 GNRH1P01148 92 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 OR52Z1P0C646 297 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 CCL5P13501 91 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 CASP1P29466 404 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 ACTR2P61160 394 aa4.55□□□□□ -1.68
LIG4-201ENST00000356922 CTTNQ14247 550 aaKnown RBP4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms