RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 NONOQ15233 471 aaKnown RBP eCLIP11.23□□□□□ -0.61
SYNE1-203ENST00000354674 PRRT2Q7Z6L0 340 aaPredicted RBP11.23□□□□□ -0.61
SYNE1-203ENST00000354674 C4orf32Q8N8J7 132 aa11.23□□□□□ -0.61
SYNE1-203ENST00000354674 IQUBQ8NA54 791 aa11.23□□□□□ -0.61
SYNE1-203ENST00000354674 FAM107BQ9H098 131 aa11.23□□□□□ -0.61
SYNE1-203ENST00000354674 LZTFL1Q9NQ48 299 aa11.23□□□□□ -0.61
SYNE1-203ENST00000354674 MYPNQ86TC9 1320 aa11.23□□□□□ -0.61
SYNE1-203ENST00000354674 A0A0U1RQJ8 604 aa11.23□□□□□ -0.61
SYNE1-203ENST00000354674 TRAF5O00463 557 aa11.23□□□□□ -0.61
SYNE1-203ENST00000354674 CXCL11O14625 94 aa11.23□□□□□ -0.61
SYNE1-203ENST00000354674 ATP2C2O75185 946 aa11.23□□□□□ -0.61
SYNE1-203ENST00000354674 PPFIA4O75335 1185 aa11.23□□□□□ -0.61
SYNE1-203ENST00000354674 GHRHRQ02643 423 aa11.23□□□□□ -0.61
SYNE1-203ENST00000354674 PPIL2Q13356 520 aa11.23□□□□□ -0.61
SYNE1-203ENST00000354674 TRIM65Q6PJ69 517 aa11.23□□□□□ -0.61
SYNE1-203ENST00000354674 GPR161Q8N6U8 529 aaKnown RBP11.23□□□□□ -0.61
SYNE1-203ENST00000354674 JMYQ8N9B5 988 aa11.23□□□□□ -0.61
SYNE1-203ENST00000354674 REPS2Q8NFH8 660 aa11.23□□□□□ -0.61
SYNE1-203ENST00000354674 ATRIPQ8WXE1 791 aa11.23□□□□□ -0.61
SYNE1-203ENST00000354674 SCLT1Q96NL6 688 aa11.23□□□□□ -0.61
SYNE1-203ENST00000354674 ELP3Q9H9T3 547 aa11.23□□□□□ -0.61
SYNE1-203ENST00000354674 NMRK2Q9NPI5 230 aa11.23□□□□□ -0.61
SYNE1-203ENST00000354674 TMEM260Q9NX78 707 aa11.23□□□□□ -0.61
SYNE1-203ENST00000354674 FBXO2Q9UK22 296 aaPredicted RBP11.23□□□□□ -0.61
SYNE1-203ENST00000354674 A0A0G2JMZ2 1700 aa11.23□□□□□ -0.61
SYNE1-203ENST00000354674 FAM237AA0A1B0GTK4 181 aa11.22□□□□□ -0.61
SYNE1-203ENST00000354674 NEMFO60524 1076 aa11.22□□□□□ -0.61
SYNE1-203ENST00000354674 PTPREP23469 700 aa11.22□□□□□ -0.61
SYNE1-203ENST00000354674 ME1P48163 572 aa11.22□□□□□ -0.61
SYNE1-203ENST00000354674 ATP2C1P98194 919 aaPredicted RBP11.22□□□□□ -0.61
SYNE1-203ENST00000354674 TBC1D8BQ0IIM8 1120 aa11.22□□□□□ -0.61
SYNE1-203ENST00000354674 ORC2Q13416 577 aaPredicted RBP11.22□□□□□ -0.61
SYNE1-203ENST00000354674 RNF187Q5TA31 235 aaPredicted RBP11.22□□□□□ -0.61
SYNE1-203ENST00000354674 MRFAP1L1Q96HT8 127 aa11.22□□□□□ -0.61
SYNE1-203ENST00000354674 TRIM6Q9C030 488 aaPredicted RBP11.22□□□□□ -0.61
SYNE1-203ENST00000354674 TMOD4Q9NZQ9 345 aa11.22□□□□□ -0.61
SYNE1-203ENST00000354674 ABCB11O95342 1321 aa11.22□□□□□ -0.61
SYNE1-203ENST00000354674 RNF40O75150 1001 aa11.22□□□□□ -0.61
SYNE1-203ENST00000354674 ATP1A3P13637 1013 aa11.22□□□□□ -0.61
SYNE1-203ENST00000354674 DSG3P32926 999 aa11.22□□□□□ -0.61
SYNE1-203ENST00000354674 INF2Q27J81 1249 aa11.22□□□□□ -0.61
SYNE1-203ENST00000354674 DHX40Q8IX18 779 aaKnown RBP11.22□□□□□ -0.61
SYNE1-203ENST00000354674 CEP120Q8N960 986 aa11.22□□□□□ -0.61
SYNE1-203ENST00000354674 ZNF579Q8NAF0 562 aaKnown RBP11.22□□□□□ -0.61
SYNE1-203ENST00000354674 PROCA1Q8NCQ7 364 aaPredicted RBP11.22□□□□□ -0.61
SYNE1-203ENST00000354674 ENGASEQ8NFI3 743 aa11.22□□□□□ -0.61
SYNE1-203ENST00000354674 CRYGNQ8WXF5 182 aa11.22□□□□□ -0.61
SYNE1-203ENST00000354674 TANGO6Q9C0B7 1094 aa11.22□□□□□ -0.61
SYNE1-203ENST00000354674 ZCWPW1Q9H0M4 648 aa11.22□□□□□ -0.61
SYNE1-203ENST00000354674 PSD3Q9NYI0 1048 aa11.22□□□□□ -0.61
SYNE1-203ENST00000354674 PNMA2Q9UL42 364 aa11.22□□□□□ -0.61
SYNE1-203ENST00000354674 SRPRBQ9Y5M8 271 aaKnown RBP11.22□□□□□ -0.61
SYNE1-203ENST00000354674 VWA5AO00534 786 aa11.22□□□□□ -0.61
SYNE1-203ENST00000354674 CUTAO60888 179 aa11.22□□□□□ -0.61
SYNE1-203ENST00000354674 FLOT1O75955 427 aa11.22□□□□□ -0.61
SYNE1-203ENST00000354674 CMA1P23946 247 aa11.22□□□□□ -0.61
SYNE1-203ENST00000354674 FMR1Q06787 632 aaKnown RBP eCLIP11.22□□□□□ -0.61
SYNE1-203ENST00000354674 AP3B2Q13367 1082 aa11.22□□□□□ -0.61
SYNE1-203ENST00000354674 MOGSQ13724 837 aa11.22□□□□□ -0.61
SYNE1-203ENST00000354674 GSPT2Q8IYD1 628 aaKnown RBP11.22□□□□□ -0.61
SYNE1-203ENST00000354674 USP17L15C9J2P7 530 aa11.21□□□□□ -0.61
SYNE1-203ENST00000354674 USP17L13C9JLJ4 530 aa11.21□□□□□ -0.61
SYNE1-203ENST00000354674 USP17L11C9JVI0 530 aa11.21□□□□□ -0.61
SYNE1-203ENST00000354674 USP17L18D6R9N7 530 aa11.21□□□□□ -0.61
SYNE1-203ENST00000354674 USP17L22D6RA61 530 aa11.21□□□□□ -0.61
SYNE1-203ENST00000354674 USP17L17D6RBQ6 530 aa11.21□□□□□ -0.61
SYNE1-203ENST00000354674 USP17L19D6RCP7 530 aa11.21□□□□□ -0.61
SYNE1-203ENST00000354674 USP17L20D6RJB6 530 aa11.21□□□□□ -0.61
SYNE1-203ENST00000354674 EBAG9O00559 213 aa11.21□□□□□ -0.61
SYNE1-203ENST00000354674 ATP2A1O14983 1001 aa11.21□□□□□ -0.61
SYNE1-203ENST00000354674 MARCKSP29966 332 aaPredicted RBP11.21□□□□□ -0.61
SYNE1-203ENST00000354674 HOXA7P31268 230 aaPredicted RBP11.21□□□□□ -0.61
SYNE1-203ENST00000354674 OAZ1P54368 228 aa11.21□□□□□ -0.61
SYNE1-203ENST00000354674 USP17L24Q0WX57 530 aa11.21□□□□□ -0.61
SYNE1-203ENST00000354674 UBE2SQ16763 222 aa11.21□□□□□ -0.61
SYNE1-203ENST00000354674 USH1GQ495M9 461 aa11.21□□□□□ -0.61
SYNE1-203ENST00000354674 HDXQ7Z353 690 aa11.21□□□□□ -0.61
SYNE1-203ENST00000354674 NEK8Q86SG6 692 aa11.21□□□□□ -0.61
SYNE1-203ENST00000354674 KRI1Q8N9T8 703 aaKnown RBP11.21□□□□□ -0.61
SYNE1-203ENST00000354674 BCAS4Q8TDM0 211 aa11.21□□□□□ -0.61
SYNE1-203ENST00000354674 TBCKQ8TEA7 893 aa11.21□□□□□ -0.61
SYNE1-203ENST00000354674 GOLPH3LQ9H4A5 285 aa11.21□□□□□ -0.61
SYNE1-203ENST00000354674 MRPL11Q9Y3B7 192 aaKnown RBP11.21□□□□□ -0.61
SYNE1-203ENST00000354674 LRRIQ3A6PVS8 624 aaPredicted RBP11.21□□□□□ -0.62
SYNE1-203ENST00000354674 LGR5O75473 907 aa11.21□□□□□ -0.62
SYNE1-203ENST00000354674 ITGBL1O95965 494 aaPredicted RBP11.21□□□□□ -0.62
SYNE1-203ENST00000354674 TTLL12Q14166 644 aaPredicted RBP11.21□□□□□ -0.62
SYNE1-203ENST00000354674 NEDD9Q14511 834 aa11.21□□□□□ -0.62
SYNE1-203ENST00000354674 COG2Q14746 738 aa11.21□□□□□ -0.62
SYNE1-203ENST00000354674 CASP8Q14790 479 aa11.21□□□□□ -0.62
SYNE1-203ENST00000354674 ZNF174Q15697 407 aa11.21□□□□□ -0.62
SYNE1-203ENST00000354674 CCDC174Q6PII3 467 aa11.21□□□□□ -0.62
SYNE1-203ENST00000354674 CCAR1Q8IX12 1150 aaKnown RBP11.21□□□□□ -0.62
SYNE1-203ENST00000354674 GOLGA1Q92805 767 aa11.21□□□□□ -0.62
SYNE1-203ENST00000354674 P2RX7Q99572 595 aaKnown RBP11.21□□□□□ -0.62
SYNE1-203ENST00000354674 SDF4Q9BRK5 362 aa11.21□□□□□ -0.62
SYNE1-203ENST00000354674 RBBP6Q7Z6E9 1792 aaKnown RBP11.21□□□□□ -0.62
SYNE1-203ENST00000354674 SMCHD1A6NHR9 2005 aa11.21□□□□□ -0.62
SYNE1-203ENST00000354674 NRDCO43847 1150 aa11.2□□□□□ -0.62
SYNE1-203ENST00000354674 VSNL1P62760 191 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms