RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 RMDN3Q96TC7 470 aa13.08□□□□□ -0.32
RTN3-204ENST00000354497 UBA5Q9GZZ9 404 aa13.08□□□□□ -0.32
RTN3-204ENST00000354497 CPVLQ9H3G5 476 aa13.08□□□□□ -0.32
RTN3-204ENST00000354497 CD207Q9UJ71 328 aa13.08□□□□□ -0.32
RTN3-204ENST00000354497 HAS3O00219 553 aa13.07□□□□□ -0.32
RTN3-204ENST00000354497 GRM6O15303 877 aa13.07□□□□□ -0.32
RTN3-204ENST00000354497 LINC01565O15544 149 aa13.07□□□□□ -0.32
RTN3-204ENST00000354497 ORC4O43929 436 aa13.07□□□□□ -0.32
RTN3-204ENST00000354497 GTF2F1P35269 517 aaKnown RBP eCLIP13.07□□□□□ -0.323e-7■■■■■ 29.2
RTN3-204ENST00000354497 NOVP48745 357 aa13.07□□□□□ -0.32
RTN3-204ENST00000354497 NDUFV1P49821 464 aa13.07□□□□□ -0.32
RTN3-204ENST00000354497 SMAD4Q13485 552 aaKnown RBP13.07□□□□□ -0.32
RTN3-204ENST00000354497 COL19A1Q14993 1142 aa13.07□□□□□ -0.32
RTN3-204ENST00000354497 TRIM67Q6ZTA4 783 aa13.07□□□□□ -0.32
RTN3-204ENST00000354497 ATP6V0A1Q93050 837 aa13.07□□□□□ -0.32
RTN3-204ENST00000354497 COL20A1Q9P218 1284 aa13.07□□□□□ -0.32
RTN3-204ENST00000354497 ABCB11O95342 1321 aa13.07□□□□□ -0.32
RTN3-204ENST00000354497 DHX16O60231 1041 aaKnown RBP13.06□□□□□ -0.32
RTN3-204ENST00000354497 TBX10O75333 385 aa13.06□□□□□ -0.32
RTN3-204ENST00000354497 CHRM1P11229 460 aaPredicted RBP13.06□□□□□ -0.32
RTN3-204ENST00000354497 MYCLP12524 364 aaPredicted RBP13.06□□□□□ -0.32
RTN3-204ENST00000354497 HSP90AA2PQ14568 343 aaPredicted RBP13.06□□□□□ -0.32
RTN3-204ENST00000354497 CDC37Q16543 378 aaPredicted RBP13.06□□□□□ -0.32
RTN3-204ENST00000354497 VPS53Q5VIR6 699 aa13.06□□□□□ -0.32
RTN3-204ENST00000354497 SERINC5Q86VE9 423 aa13.06□□□□□ -0.32
RTN3-204ENST00000354497 RGS22Q8NE09 1264 aa13.06□□□□□ -0.32
RTN3-204ENST00000354497 EMID1Q96A84 441 aaPredicted RBP13.06□□□□□ -0.32
RTN3-204ENST00000354497 IL17RAQ96F46 866 aa13.06□□□□□ -0.32
RTN3-204ENST00000354497 SPATA33Q96N06 139 aa13.06□□□□□ -0.32
RTN3-204ENST00000354497 IWS1Q96ST2 819 aa13.06□□□□□ -0.32
RTN3-204ENST00000354497 PRRX2Q99811 253 aa13.06□□□□□ -0.32
RTN3-204ENST00000354497 C11orf84Q9BUA3 381 aaPredicted RBP13.06□□□□□ -0.32
RTN3-204ENST00000354497 WDFY4Q6ZS81 3184 aa13.06□□□□□ -0.32
RTN3-204ENST00000354497 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.05□□□□□ -0.32
RTN3-204ENST00000354497 FOXP2O15409 715 aa13.05□□□□□ -0.32
RTN3-204ENST00000354497 EIF3JO75822 258 aaKnown RBP13.05□□□□□ -0.32
RTN3-204ENST00000354497 TCF15Q12870 199 aa13.05□□□□□ -0.32
RTN3-204ENST00000354497 MCF2L2Q86YR7 1114 aa13.05□□□□□ -0.32
RTN3-204ENST00000354497 ATOH1Q92858 354 aaPredicted RBP13.05□□□□□ -0.32
RTN3-204ENST00000354497 OSBPL7Q9BZF2 842 aa13.05□□□□□ -0.32
RTN3-204ENST00000354497 LMAN2LQ9H0V9 348 aa13.05□□□□□ -0.32
RTN3-204ENST00000354497 ANAPC4Q9UJX5 808 aa13.05□□□□□ -0.32
RTN3-204ENST00000354497 MICAL3Q7RTP6 2002 aa13.05□□□□□ -0.32
RTN3-204ENST00000354497 TREHO43280 583 aa13.05□□□□□ -0.32
RTN3-204ENST00000354497 GGPS1O95749 300 aa13.05□□□□□ -0.32
RTN3-204ENST00000354497 CFBP00751 764 aa13.05□□□□□ -0.32
RTN3-204ENST00000354497 NR3C2P08235 984 aa13.05□□□□□ -0.32
RTN3-204ENST00000354497 PKN1Q16512 942 aa13.05□□□□□ -0.32
RTN3-204ENST00000354497 CTC1Q2NKJ3 1217 aa13.05□□□□□ -0.32
RTN3-204ENST00000354497 BMP8AQ7Z5Y6 402 aa13.05□□□□□ -0.32
RTN3-204ENST00000354497 PXMP2Q9NR77 195 aa13.05□□□□□ -0.32
RTN3-204ENST00000354497 NLRC5Q86WI3 1866 aa13.04□□□□□ -0.32
RTN3-204ENST00000354497 RB1P06400 928 aa13.04□□□□□ -0.32
RTN3-204ENST00000354497 SMIM10L2AP0DMW4 78 aa13.04□□□□□ -0.32
RTN3-204ENST00000354497 SMIM10L2BP0DMW5 78 aa13.04□□□□□ -0.32
RTN3-204ENST00000354497 BMPR1AP36894 532 aa13.04□□□□□ -0.32
RTN3-204ENST00000354497 HAND2P61296 217 aa13.04□□□□□ -0.32
RTN3-204ENST00000354497 ZXDAP98168 799 aa13.04□□□□□ -0.32
RTN3-204ENST00000354497 HSDL1Q3SXM5 330 aa13.04□□□□□ -0.32
RTN3-204ENST00000354497 GPATCH4Q5T3I0 446 aaKnown RBP13.04□□□□□ -0.32
RTN3-204ENST00000354497 FBXL6Q8N531 539 aa13.04□□□□□ -0.32
RTN3-204ENST00000354497 APBB2Q92870 758 aa13.04□□□□□ -0.32
RTN3-204ENST00000354497 ZKSCAN3Q9BRR0 538 aa13.04□□□□□ -0.32
RTN3-204ENST00000354497 MLXIPQ9HAP2 919 aa13.04□□□□□ -0.32
RTN3-204ENST00000354497 VAT1LQ9HCJ6 419 aa13.04□□□□□ -0.32
RTN3-204ENST00000354497 ALG13Q9NP73 1137 aaKnown RBP13.04□□□□□ -0.32
RTN3-204ENST00000354497 TCP11L1Q9NUJ3 509 aa13.04□□□□□ -0.32
RTN3-204ENST00000354497 MRPL11Q9Y3B7 192 aaKnown RBP13.04□□□□□ -0.32
RTN3-204ENST00000354497 RWDD3Q9Y3V2 267 aa13.04□□□□□ -0.32
RTN3-204ENST00000354497 TTC41PQ6P2S7 1318 aa13.04□□□□□ -0.32
RTN3-204ENST00000354497 CCDC171Q6TFL3 1326 aa13.04□□□□□ -0.32
RTN3-204ENST00000354497 COL4A6Q14031 1691 aa13.03□□□□□ -0.32
RTN3-204ENST00000354497 PPFIA4O75335 1185 aa13.03□□□□□ -0.32
RTN3-204ENST00000354497 SNHG28P0DPA3 235 aa13.03□□□□□ -0.32
RTN3-204ENST00000354497 HSPD1P10809 573 aaKnown RBP13.03□□□□□ -0.32
RTN3-204ENST00000354497 BTG3Q14201 252 aaPredicted RBP13.03□□□□□ -0.32
RTN3-204ENST00000354497 CELF3Q5SZQ8 465 aaKnown RBP13.03□□□□□ -0.32
RTN3-204ENST00000354497 MYSM1Q5VVJ2 828 aa13.03□□□□□ -0.32
RTN3-204ENST00000354497 ADGRF4Q8IZF3 695 aa13.03□□□□□ -0.32
RTN3-204ENST00000354497 PI4K2BQ8TCG2 481 aa13.03□□□□□ -0.32
RTN3-204ENST00000354497 PPP2R3CQ969Q6 453 aa13.03□□□□□ -0.32
RTN3-204ENST00000354497 ZFP91Q96JP5 570 aaPredicted RBP13.03□□□□□ -0.32
RTN3-204ENST00000354497 ADGRA3Q8IWK6 1321 aa13.03□□□□□ -0.32
RTN3-204ENST00000354497 C5orf67F2Z3F1 127 aa13.02□□□□□ -0.33
RTN3-204ENST00000354497 H3BRB1 525 aa13.02□□□□□ -0.33
RTN3-204ENST00000354497 VCPP55072 806 aaKnown RBP13.02□□□□□ -0.33
RTN3-204ENST00000354497 ADAM15Q13444 863 aa13.02□□□□□ -0.33
RTN3-204ENST00000354497 QRICH1Q2TAL8 776 aa13.02□□□□□ -0.33
RTN3-204ENST00000354497 OTUD7AQ8TE49 926 aaPredicted RBP13.02□□□□□ -0.33
RTN3-204ENST00000354497 RPGRIP1Q96KN7 1286 aa13.02□□□□□ -0.33
RTN3-204ENST00000354497 C16orf70Q9BSU1 422 aa13.02□□□□□ -0.33
RTN3-204ENST00000354497 TUT1Q9H6E5 874 aaKnown RBP13.02□□□□□ -0.33
RTN3-204ENST00000354497 SETD4Q9NVD3 440 aa13.02□□□□□ -0.33
RTN3-204ENST00000354497 ZNF318Q5VUA4 2279 aa13.02□□□□□ -0.33
RTN3-204ENST00000354497 RALGAPA2Q2PPJ7 1873 aa13.01□□□□□ -0.33
RTN3-204ENST00000354497 NOP56O00567 594 aaKnown RBP13.01□□□□□ -0.33
RTN3-204ENST00000354497 MMP1P03956 469 aa13.01□□□□□ -0.33
RTN3-204ENST00000354497 LGALS2P05162 132 aa13.01□□□□□ -0.33
RTN3-204ENST00000354497 FGRP09769 529 aa13.01□□□□□ -0.33
RTN3-204ENST00000354497 HOXD8P13378 290 aaPredicted RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms