RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 KCNK16Q96T55 309 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 F8W8V4 182 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 RFX1P22670 979 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 BFSP1Q12934 665 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 LINS1Q8NG48 757 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 CCDC127Q96BQ5 260 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 CARD9Q9H257 536 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 LRCH1Q9Y2L9 728 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 KPNA4O00629 521 aaPredicted RBP13.56□□□□□ -0.24
COL6A3-203ENST00000353578 TSPAN9O75954 239 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 WDR47O94967 919 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 VCAM1P19320 739 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 RBM5P52756 815 aaKnown RBP eCLIP13.56□□□□□ -0.24
COL6A3-203ENST00000353578 RIBC1Q8N443 379 aaPredicted RBP13.56□□□□□ -0.24
COL6A3-203ENST00000353578 ADCK1Q86TW2 530 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 SCG3Q8WXD2 468 aaKnown RBP13.56□□□□□ -0.24
COL6A3-203ENST00000353578 MAGOHBQ96A72 148 aaKnown RBP13.56□□□□□ -0.24
COL6A3-203ENST00000353578 KPNA7A9QM74 516 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 DAPK3O43293 454 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 TRPM8Q7Z2W7 1104 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 PSMB7Q99436 277 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 FANCLQ9NW38 375 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 SEC24BO95487 1268 aa13.55□□□□□ -0.24
COL6A3-203ENST00000353578 PARP1P09874 1014 aaKnown RBP13.55□□□□□ -0.24
COL6A3-203ENST00000353578 VCPKMTQ9H867 229 aa13.55□□□□□ -0.24
COL6A3-203ENST00000353578 ZBBXA8MT70 800 aa13.55□□□□□ -0.24
COL6A3-203ENST00000353578 RAB15P59190 212 aa13.55□□□□□ -0.24
COL6A3-203ENST00000353578 PLD3Q8IV08 490 aa13.55□□□□□ -0.24
COL6A3-203ENST00000353578 MDH1P40925 334 aaKnown RBP13.55□□□□□ -0.24
COL6A3-203ENST00000353578 SGO2Q562F6 1265 aa13.55□□□□□ -0.24
COL6A3-203ENST00000353578 GAS2L3Q86XJ1 694 aa13.55□□□□□ -0.24
COL6A3-203ENST00000353578 SERPING1P05155 500 aa13.55□□□□□ -0.24
COL6A3-203ENST00000353578 DNM3Q9UQ16 869 aa13.55□□□□□ -0.24
COL6A3-203ENST00000353578 RIMS2Q9UQ26 1411 aa13.55□□□□□ -0.24
COL6A3-203ENST00000353578 CAPN1P07384 714 aa13.55□□□□□ -0.24
COL6A3-203ENST00000353578 PNOCQ13519 176 aa13.55□□□□□ -0.24
COL6A3-203ENST00000353578 DDX54Q8TDD1 881 aaKnown RBP13.55□□□□□ -0.24
COL6A3-203ENST00000353578 ASCC2Q9H1I8 757 aaPredicted RBP13.55□□□□□ -0.24
COL6A3-203ENST00000353578 KIAA0232Q92628 1395 aa13.55□□□□□ -0.24
COL6A3-203ENST00000353578 TRADDQ15628 312 aa13.55□□□□□ -0.24
COL6A3-203ENST00000353578 CALCRLQ16602 461 aa13.55□□□□□ -0.24
COL6A3-203ENST00000353578 TMEM154Q6P9G4 183 aa13.55□□□□□ -0.24
COL6A3-203ENST00000353578 UBE3BQ7Z3V4 1068 aa13.55□□□□□ -0.24
COL6A3-203ENST00000353578 ZNF555Q8NEP9 628 aa13.55□□□□□ -0.24
COL6A3-203ENST00000353578 RHOBTB1O94844 696 aa13.55□□□□□ -0.24
COL6A3-203ENST00000353578 KSR2Q6VAB6 950 aa13.55□□□□□ -0.24
COL6A3-203ENST00000353578 MRPL47Q9HD33 250 aaKnown RBP13.55□□□□□ -0.24
COL6A3-203ENST00000353578 MTMR6Q9Y217 621 aa13.55□□□□□ -0.24
COL6A3-203ENST00000353578 SWT1Q5T5J6 900 aaKnown RBP13.55□□□□□ -0.24
COL6A3-203ENST00000353578 UNC45AQ9H3U1 944 aa13.55□□□□□ -0.24
COL6A3-203ENST00000353578 IFNB1P01574 187 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 LRRC63Q05C16 580 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 LARP6Q9BRS8 491 aaKnown RBP13.54□□□□□ -0.24
COL6A3-203ENST00000353578 CPP00450 1065 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 ATP5BP06576 529 aaKnown RBP13.54□□□□□ -0.24
COL6A3-203ENST00000353578 TMED2Q15363 201 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 NOVA2Q9UNW9 492 aaKnown RBP13.54□□□□□ -0.24
COL6A3-203ENST00000353578 ABCC5O15440 1437 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 ZMYM6O95789 1325 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 CYTH3O43739 400 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 TTKP33981 857 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 USP14P54578 494 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 PRPSAP1Q14558 356 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 C16orf89Q6UX73 402 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 HDDC2Q7Z4H3 204 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 ZNF354CQ86Y25 554 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 NAF1Q96HR8 494 aaKnown RBP13.54□□□□□ -0.24
COL6A3-203ENST00000353578 LSG1Q9H089 658 aaKnown RBP13.54□□□□□ -0.24
COL6A3-203ENST00000353578 DISP3Q9P2K9 1392 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 HNRNPH1P31943 449 aaKnown RBP13.54□□□□□ -0.24
COL6A3-203ENST00000353578 PURAQ00577 322 aaKnown RBP13.54□□□□□ -0.24
COL6A3-203ENST00000353578 CUL4AQ13619 759 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 OLFML2BQ68BL8 750 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 PASD1Q8IV76 773 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 ACRBPQ8NEB7 543 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 MAGED4Q96JG8 741 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 DCLRE1BQ9H816 532 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 STRIP2Q9ULQ0 834 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 FAM187AA6NFU0 413 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 TAC1P20366 129 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 ATAD3BQ5T9A4 648 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 ANKIB1Q9P2G1 1089 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 SRRM3A6NNA2 597 aaPredicted RBP13.54□□□□□ -0.24
COL6A3-203ENST00000353578 CHRNA3P32297 505 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 MAN2A1Q16706 1144 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 SLFN12Q8IYM2 578 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 ASPSCR1Q9BZE9 553 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 C1orf112Q9NSG2 853 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 ARHGEF10O15013 1369 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 TUBGCP2Q9BSJ2 902 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 NDEL1Q9GZM8 345 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 SLC4A4Q9Y6R1 1079 aa13.54□□□□□ -0.24
COL6A3-203ENST00000353578 CCT8L1PA6NM43 557 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 YWHAGP61981 247 aaKnown RBP eCLIP13.53□□□□□ -0.24
COL6A3-203ENST00000353578 ACTN3Q08043 901 aaPredicted RBP13.53□□□□□ -0.24
COL6A3-203ENST00000353578 U2AF1L4Q8WU68 220 aaKnown RBP13.53□□□□□ -0.24
COL6A3-203ENST00000353578 HDAC11Q96DB2 347 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 EPC1Q9H2F5 836 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 GOLPH3LQ9H4A5 285 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 MAST1Q9Y2H9 1570 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms