RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 FAM173BQ6P4H8 233 aa9.42□□□□□ -0.9
CD44-205ENST00000352818 MICU3Q86XE3 530 aa9.42□□□□□ -0.9
CD44-205ENST00000352818 ZNF654Q8IZM8 581 aa9.42□□□□□ -0.9
CD44-205ENST00000352818 TMEM105Q8N8V8 129 aa9.42□□□□□ -0.9
CD44-205ENST00000352818 ANP32BQ92688 251 aaKnown RBP9.42□□□□□ -0.9
CD44-205ENST00000352818 ATG4CQ96DT6 458 aa9.42□□□□□ -0.9
CD44-205ENST00000352818 MMP19Q99542 508 aa9.42□□□□□ -0.9
CD44-205ENST00000352818 POP1Q99575 1024 aaKnown RBP9.42□□□□□ -0.9
CD44-205ENST00000352818 FEZ1Q99689 392 aa9.42□□□□□ -0.9
CD44-205ENST00000352818 UBAC1Q9BSL1 405 aa9.42□□□□□ -0.9
CD44-205ENST00000352818 SENP2Q9HC62 589 aa9.42□□□□□ -0.9
CD44-205ENST00000352818 TRMT13Q9NUP7 481 aaKnown RBP9.42□□□□□ -0.9
CD44-205ENST00000352818 POLR3EQ9NVU0 708 aa9.42□□□□□ -0.9
CD44-205ENST00000352818 ZHX1Q9UKY1 873 aaPredicted RBP9.42□□□□□ -0.9
CD44-205ENST00000352818 SCN5AQ14524 2016 aa9.42□□□□□ -0.9
CD44-205ENST00000352818 MYH6P13533 1939 aa9.42□□□□□ -0.9
CD44-205ENST00000352818 ASH1LQ9NR48 2969 aaKnown RBP9.42□□□□□ -0.9
CD44-205ENST00000352818 TET1Q8NFU7 2136 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 A0A1W2PQ27 194 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 A0A1W2PQ64 194 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 A0A1W2PQD8 194 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 A0A1W2PRG0 241 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 GOLGA6L4A6NEF3 574 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 STXBP3O00186 592 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 RANBP6O60518 1105 aaKnown RBP9.41□□□□□ -0.9
CD44-205ENST00000352818 DDAH1O94760 285 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 CALM1P0DP23 149 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 CALM2P0DP24 149 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 CALM3P0DP25 149 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 NUBP1P53384 320 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 WDR5P61964 334 aaKnown RBP9.41□□□□□ -0.9
CD44-205ENST00000352818 PLS1Q14651 629 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 CBX2Q14781 532 aaPredicted RBP9.41□□□□□ -0.9
CD44-205ENST00000352818 RTN1Q16799 776 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 RRP12Q5JTH9 1297 aaKnown RBP9.41□□□□□ -0.9
CD44-205ENST00000352818 MAMDC4Q6UXC1 1216 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 RPAINQ86UA6 219 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 IQCA1Q86XH1 822 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 FOXP4Q8IVH2 680 aaPredicted RBP9.41□□□□□ -0.9
CD44-205ENST00000352818 TEX11Q8IYF3 940 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 BANK1Q8NDB2 785 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 PGBD1Q96JS3 809 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 PDLIM2Q96JY6 352 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 FGD4Q96M96 766 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 ZSCAN10Q96SZ4 725 aaPredicted RBP9.41□□□□□ -0.9
CD44-205ENST00000352818 ALG1Q9BT22 464 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 KATNBL1Q9H079 304 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 NUP62CLQ9H1M0 184 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 CLSTN2Q9H4D0 955 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 CLDND1Q9NY35 253 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 AATFQ9NY61 560 aaKnown RBP eCLIP9.41□□□□□ -0.9
CD44-205ENST00000352818 HOXC10Q9NYD6 342 aa9.41□□□□□ -0.9
CD44-205ENST00000352818 FRYQ5TBA9 3013 aa9.4□□□□□ -0.9
CD44-205ENST00000352818 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.4□□□□□ -0.9
CD44-205ENST00000352818 MINDY4BA8MYZ0 360 aa9.4□□□□□ -0.9
CD44-205ENST00000352818 USP17L12C9JPN9 530 aa9.4□□□□□ -0.9
CD44-205ENST00000352818 USP17L21D6R901 530 aa9.4□□□□□ -0.9
CD44-205ENST00000352818 TBX10O75333 385 aa9.4□□□□□ -0.9
CD44-205ENST00000352818 GJB5O95377 273 aa9.4□□□□□ -0.9
CD44-205ENST00000352818 BAG3O95817 575 aa9.4□□□□□ -0.9
CD44-205ENST00000352818 ACTN1P12814 892 aa9.4□□□□□ -0.9
CD44-205ENST00000352818 PLCG2P16885 1265 aa9.4□□□□□ -0.9
CD44-205ENST00000352818 LIG1P18858 919 aa9.4□□□□□ -0.9
CD44-205ENST00000352818 USP14P54578 494 aa9.4□□□□□ -0.9
CD44-205ENST00000352818 SSRP1Q08945 709 aaKnown RBP9.4□□□□□ -0.9
CD44-205ENST00000352818 ACVR2BQ13705 512 aa9.4□□□□□ -0.9
CD44-205ENST00000352818 CCDC144BQ3MJ40 725 aa9.4□□□□□ -0.9
CD44-205ENST00000352818 HS1BP3Q53T59 392 aa9.4□□□□□ -0.9
CD44-205ENST00000352818 CCDC178Q5BJE1 867 aa9.4□□□□□ -0.9
CD44-205ENST00000352818 MYSM1Q5VVJ2 828 aa9.4□□□□□ -0.9
CD44-205ENST00000352818 TATDN1Q6P1N9 297 aa9.4□□□□□ -0.9
CD44-205ENST00000352818 EP400NLQ6ZTU2 488 aa9.4□□□□□ -0.9
CD44-205ENST00000352818 SLF2Q8IX21 1173 aa9.4□□□□□ -0.9
CD44-205ENST00000352818 TRIM22Q8IYM9 498 aa9.4□□□□□ -0.9
CD44-205ENST00000352818 KIAA2013Q8IYS2 634 aa9.4□□□□□ -0.9
CD44-205ENST00000352818 KCNG4Q8TDN1 519 aa9.4□□□□□ -0.9
CD44-205ENST00000352818 USP28Q96RU2 1077 aa9.4□□□□□ -0.9
CD44-205ENST00000352818 RNF26Q9BY78 433 aaPredicted RBP9.4□□□□□ -0.9
CD44-205ENST00000352818 DHX36Q9H2U1 1008 aaKnown RBP9.4□□□□□ -0.9
CD44-205ENST00000352818 INCENPQ9NQS7 918 aa9.4□□□□□ -0.9
CD44-205ENST00000352818 TOMM22Q9NS69 142 aa9.4□□□□□ -0.9
CD44-205ENST00000352818 RBM28Q9NW13 759 aaKnown RBP9.4□□□□□ -0.9
CD44-205ENST00000352818 TFIP11Q9UBB9 837 aaKnown RBP9.4□□□□□ -0.9
CD44-205ENST00000352818 MORC2Q9Y6X9 1032 aaPredicted RBP9.4□□□□□ -0.9
CD44-205ENST00000352818 FLT1P17948 1338 aa9.39□□□□□ -0.91
CD44-205ENST00000352818 DNAJC25-GNG10A0A024R161 153 aa9.39□□□□□ -0.91
CD44-205ENST00000352818 DEXIO95424 95 aa9.39□□□□□ -0.91
CD44-205ENST00000352818 IQCF3P0C7M6 154 aa9.39□□□□□ -0.91
CD44-205ENST00000352818 CCDC192P0DO97 292 aa9.39□□□□□ -0.91
CD44-205ENST00000352818 U2AF2P26368 475 aaKnown RBP eCLIP9.39□□□□□ -0.91
CD44-205ENST00000352818 PDE4BQ07343 736 aa9.39□□□□□ -0.91
CD44-205ENST00000352818 SMAD4Q13485 552 aaKnown RBP9.39□□□□□ -0.91
CD44-205ENST00000352818 TRIM29Q14134 588 aa9.39□□□□□ -0.91
CD44-205ENST00000352818 TIGD5Q53EQ6 642 aa9.39□□□□□ -0.91
CD44-205ENST00000352818 C12orf60Q5U649 245 aa9.39□□□□□ -0.91
CD44-205ENST00000352818 MAPKAPK5Q8IW41 473 aa9.39□□□□□ -0.91
CD44-205ENST00000352818 CRACR2BQ8N4Y2 399 aaPredicted RBP9.39□□□□□ -0.91
CD44-205ENST00000352818 MB21D1Q8N884 522 aa9.39□□□□□ -0.91
CD44-205ENST00000352818 ENAHQ8N8S7 591 aaPredicted RBP9.39□□□□□ -0.91
CD44-205ENST00000352818 FANCBQ8NB91 859 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms