RNA–Protein interactions for RNA: ENST00000350148.9

SMAD9-201, Transcript of SMAD family member 9, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMAD9, Length 5,447 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-201ENST00000350148 CEP128Q6ZU80 1094 aa13.34□□□□□ -0.27
SMAD9-201ENST00000350148 PANX2Q96RD6 677 aa13.34□□□□□ -0.27
SMAD9-201ENST00000350148 WDR64B1ANS9 1081 aa13.34□□□□□ -0.27
SMAD9-201ENST00000350148 ACTN2P35609 894 aa13.34□□□□□ -0.27
SMAD9-201ENST00000350148 ACAD9Q9H845 621 aa13.34□□□□□ -0.27
SMAD9-201ENST00000350148 HLTFQ14527 1009 aaKnown RBP eCLIP13.34□□□□□ -0.27
SMAD9-201ENST00000350148 RNF187Q5TA31 235 aaPredicted RBP13.34□□□□□ -0.27
SMAD9-201ENST00000350148 KCNV1Q6PIU1 500 aa13.34□□□□□ -0.27
SMAD9-201ENST00000350148 TRIM58Q8NG06 486 aa13.34□□□□□ -0.27
SMAD9-201ENST00000350148 TRPC6Q9Y210 931 aa13.34□□□□□ -0.27
SMAD9-201ENST00000350148 AFPP02771 609 aaKnown RBP13.33□□□□□ -0.28
SMAD9-201ENST00000350148 KRT5P13647 590 aa13.33□□□□□ -0.28
SMAD9-201ENST00000350148 SEL1L2Q5TEA6 688 aa13.33□□□□□ -0.28
SMAD9-201ENST00000350148 MAEAQ7L5Y9 396 aa13.33□□□□□ -0.28
SMAD9-201ENST00000350148 TXNRD3Q86VQ6 643 aa13.33□□□□□ -0.28
SMAD9-201ENST00000350148 GMCL1Q96IK5 515 aa13.33□□□□□ -0.28
SMAD9-201ENST00000350148 RNF146Q9NTX7 359 aa13.33□□□□□ -0.28
SMAD9-201ENST00000350148 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.33□□□□□ -0.28
SMAD9-201ENST00000350148 NR2F2P24468 414 aa13.33□□□□□ -0.28
SMAD9-201ENST00000350148 SURF1Q15526 300 aa13.33□□□□□ -0.28
SMAD9-201ENST00000350148 UBL4BQ8N7F7 174 aa13.33□□□□□ -0.28
SMAD9-201ENST00000350148 MB21D1Q8N884 522 aa13.33□□□□□ -0.28
SMAD9-201ENST00000350148 C2orf69Q8N8R5 385 aa13.33□□□□□ -0.28
SMAD9-201ENST00000350148 MCPH1Q8NEM0 835 aa13.33□□□□□ -0.28
SMAD9-201ENST00000350148 SPDYE2BA6NHP3 402 aa13.33□□□□□ -0.28
SMAD9-201ENST00000350148 MYCNP04198 464 aaPredicted RBP13.33□□□□□ -0.28
SMAD9-201ENST00000350148 SPDYE6P0CI01 402 aa13.33□□□□□ -0.28
SMAD9-201ENST00000350148 FERP16591 822 aa13.33□□□□□ -0.28
SMAD9-201ENST00000350148 BPIFB4P59827 614 aa13.33□□□□□ -0.28
SMAD9-201ENST00000350148 EPHA7Q15375 998 aa13.33□□□□□ -0.28
SMAD9-201ENST00000350148 DAAM1Q9Y4D1 1078 aa13.33□□□□□ -0.28
SMAD9-201ENST00000350148 DNA2P51530 1060 aa13.33□□□□□ -0.28
SMAD9-201ENST00000350148 SLC8A3P57103 927 aa13.33□□□□□ -0.28
SMAD9-201ENST00000350148 R3HDM1Q15032 1099 aaKnown RBP13.33□□□□□ -0.28
SMAD9-201ENST00000350148 HOOK3Q86VS8 718 aa13.33□□□□□ -0.28
SMAD9-201ENST00000350148 LDHDQ86WU2 507 aa13.33□□□□□ -0.28
SMAD9-201ENST00000350148 RMDN3Q96TC7 470 aa13.33□□□□□ -0.28
SMAD9-201ENST00000350148 NDC80O14777 642 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 ONECUT3O60422 494 aaPredicted RBP13.32□□□□□ -0.28
SMAD9-201ENST00000350148 HOXA13P31271 388 aaPredicted RBP13.32□□□□□ -0.28
SMAD9-201ENST00000350148 CYP2J2P51589 502 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 MTMR1Q13613 665 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 EXOC3L4Q17RC7 722 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 CCDC26Q8TAB7 109 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 IFIH1Q9BYX4 1025 aaKnown RBP13.32□□□□□ -0.28
SMAD9-201ENST00000350148 PRM3Q9NNZ6 103 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 FAM207AQ9NSI2 230 aaPredicted RBP13.32□□□□□ -0.28
SMAD9-201ENST00000350148 P4HBP07237 508 aaKnown RBP13.32□□□□□ -0.28
SMAD9-201ENST00000350148 IFFO1Q0D2I5 559 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 SPP2Q13103 211 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 C10orf76Q5T2E6 689 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 CCDC170Q8IYT3 715 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 GUF1Q8N442 669 aaKnown RBP13.32□□□□□ -0.28
SMAD9-201ENST00000350148 MAIP1Q8WWC4 291 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 ADPGKQ9BRR6 497 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 SPEF2Q9C093 1822 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 FAM196BA6NMK8 535 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 PPP2R5EQ16537 467 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 WHAMMP3Q1A5X7 153 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 TCP11X2Q5H9J9 407 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 UTP14CQ5TAP6 766 aaKnown RBP13.32□□□□□ -0.28
SMAD9-201ENST00000350148 TCP11Q8WWU5 503 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 KCND2Q9NZV8 630 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 SEPT9Q9UHD8 586 aaPredicted RBP13.32□□□□□ -0.28
SMAD9-201ENST00000350148 TUBE1Q9UJT0 475 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 PPP2R2CQ9Y2T4 447 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 USP17L6PQ6QN14 398 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 ADGRA1Q86SQ6 560 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 DPP9Q86TI2 863 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 POTEDQ86YR6 584 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 FAM186BQ8IYM0 893 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 GRAMD1CQ8IYS0 662 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 ZNF280CQ8ND82 737 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 MIS12Q9H081 205 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 JMJD4Q9H9V9 463 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 KMT5AQ9NQR1 393 aa13.32□□□□□ -0.28
SMAD9-201ENST00000350148 LMNB1P20700 586 aa13.31□□□□□ -0.28
SMAD9-201ENST00000350148 ZBED6P86452 979 aa13.31□□□□□ -0.28
SMAD9-201ENST00000350148 LRMPQ12912 555 aa13.31□□□□□ -0.28
SMAD9-201ENST00000350148 NEDD9Q14511 834 aa13.31□□□□□ -0.28
SMAD9-201ENST00000350148 COG2Q14746 738 aa13.31□□□□□ -0.28
SMAD9-201ENST00000350148 LRRC4BQ9NT99 713 aa13.31□□□□□ -0.28
SMAD9-201ENST00000350148 HSF2BPO75031 334 aa13.31□□□□□ -0.28
SMAD9-201ENST00000350148 TNNC2P02585 160 aa13.31□□□□□ -0.28
SMAD9-201ENST00000350148 GMPSP49915 693 aaPredicted RBP13.31□□□□□ -0.28
SMAD9-201ENST00000350148 FXR2P51116 673 aaKnown RBP eCLIP13.31□□□□□ -0.28
SMAD9-201ENST00000350148 ADKP55263 362 aaKnown RBP13.31□□□□□ -0.28
SMAD9-201ENST00000350148 SNRNP48Q6IEG0 339 aaKnown RBP13.31□□□□□ -0.28
SMAD9-201ENST00000350148 CEP170P1Q96L14 293 aa13.31□□□□□ -0.28
SMAD9-201ENST00000350148 TMEM260Q9NX78 707 aa13.31□□□□□ -0.28
SMAD9-201ENST00000350148 EZRP15311 586 aaKnown RBP13.31□□□□□ -0.28
SMAD9-201ENST00000350148 NTRK3Q16288 839 aa13.31□□□□□ -0.28
SMAD9-201ENST00000350148 LRRC45Q96CN5 670 aa13.31□□□□□ -0.28
SMAD9-201ENST00000350148 CUL4BQ13620 913 aa13.31□□□□□ -0.28
SMAD9-201ENST00000350148 SLFN12LQ6IEE8 588 aa13.31□□□□□ -0.28
SMAD9-201ENST00000350148 C7orf25Q9BPX7 421 aa13.31□□□□□ -0.28
SMAD9-201ENST00000350148 KIAA1586Q9HCI6 787 aa13.31□□□□□ -0.28
SMAD9-201ENST00000350148 RAVER2Q9HCJ3 691 aaKnown RBP13.31□□□□□ -0.28
SMAD9-201ENST00000350148 C1orf112Q9NSG2 853 aa13.31□□□□□ -0.28
SMAD9-201ENST00000350148 PRR12Q9ULL5 1215 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms