RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 PVALEFA0A1B0GWK0 134 aa16.69■□□□□ 0.26
TPM3-208ENST00000341485 WDR46O15213 610 aaKnown RBP16.69■□□□□ 0.26
TPM3-208ENST00000341485 PLA2G6O60733 806 aa16.69■□□□□ 0.26
TPM3-208ENST00000341485 MTIF2P46199 727 aaKnown RBP16.69■□□□□ 0.26
TPM3-208ENST00000341485 TBC1D8BQ0IIM8 1120 aa16.69■□□□□ 0.26
TPM3-208ENST00000341485 PRKG1Q13976 671 aa16.69■□□□□ 0.26
TPM3-208ENST00000341485 CENPPQ6IPU0 288 aa16.69■□□□□ 0.26
TPM3-208ENST00000341485 CCDC174Q6PII3 467 aa16.69■□□□□ 0.26
TPM3-208ENST00000341485 DYMQ7RTS9 669 aa16.69■□□□□ 0.26
TPM3-208ENST00000341485 KCNK18Q7Z418 384 aa16.69■□□□□ 0.26
TPM3-208ENST00000341485 RABGGTAQ92696 567 aa16.69■□□□□ 0.26
TPM3-208ENST00000341485 GOLGA1Q92805 767 aa16.69■□□□□ 0.26
TPM3-208ENST00000341485 HAS1Q92839 578 aa16.69■□□□□ 0.26
TPM3-208ENST00000341485 RAB34Q9BZG1 259 aa16.69■□□□□ 0.26
TPM3-208ENST00000341485 DDX25Q9UHL0 483 aaKnown RBP16.69■□□□□ 0.26
TPM3-208ENST00000341485 CTAGE9A4FU28 777 aa16.69■□□□□ 0.26
TPM3-208ENST00000341485 USP14P54578 494 aa16.69■□□□□ 0.26
TPM3-208ENST00000341485 MTMR2Q13614 643 aa16.69■□□□□ 0.26
TPM3-208ENST00000341485 ECM1Q16610 540 aa16.69■□□□□ 0.26
TPM3-208ENST00000341485 KRT79Q5XKE5 535 aa16.69■□□□□ 0.26
TPM3-208ENST00000341485 TMCO3Q6UWJ1 677 aa16.69■□□□□ 0.26
TPM3-208ENST00000341485 KLRG1Q96E93 195 aa16.69■□□□□ 0.26
TPM3-208ENST00000341485 L3MBTL3Q96JM7 780 aaPredicted RBP16.69■□□□□ 0.26
TPM3-208ENST00000341485 NOC4LQ9BVI4 516 aaKnown RBP16.69■□□□□ 0.26
TPM3-208ENST00000341485 AGPAT5Q9NUQ2 364 aa16.69■□□□□ 0.26
TPM3-208ENST00000341485 SSC5DA1L4H1 1573 aa16.68■□□□□ 0.26
TPM3-208ENST00000341485 ADM5C9JUS6 153 aa16.68■□□□□ 0.26
TPM3-208ENST00000341485 PNMA6AP0CW24 399 aaPredicted RBP16.68■□□□□ 0.26
TPM3-208ENST00000341485 PTPRAP18433 802 aa16.68■□□□□ 0.26
TPM3-208ENST00000341485 MEA1Q16626 185 aa16.68■□□□□ 0.26
TPM3-208ENST00000341485 USP50Q70EL3 339 aaPredicted RBP16.68■□□□□ 0.26
TPM3-208ENST00000341485 SRGAP1Q7Z6B7 1085 aa16.68■□□□□ 0.26
TPM3-208ENST00000341485 GJA10Q969M2 543 aa16.68■□□□□ 0.26
TPM3-208ENST00000341485 RANBP17Q9H2T7 1088 aaKnown RBP16.68■□□□□ 0.26
TPM3-208ENST00000341485 MYO1AQ9UBC5 1043 aa16.68■□□□□ 0.26
TPM3-208ENST00000341485 ZC3H4Q9UPT8 1303 aaKnown RBP16.68■□□□□ 0.26
TPM3-208ENST00000341485 USP17L15C9J2P7 530 aa16.68■□□□□ 0.26
TPM3-208ENST00000341485 USP17L13C9JLJ4 530 aa16.68■□□□□ 0.26
TPM3-208ENST00000341485 USP17L11C9JVI0 530 aa16.68■□□□□ 0.26
TPM3-208ENST00000341485 USP17L18D6R9N7 530 aa16.68■□□□□ 0.26
TPM3-208ENST00000341485 USP17L22D6RA61 530 aa16.68■□□□□ 0.26
TPM3-208ENST00000341485 USP17L17D6RBQ6 530 aa16.68■□□□□ 0.26
TPM3-208ENST00000341485 USP17L19D6RCP7 530 aa16.68■□□□□ 0.26
TPM3-208ENST00000341485 USP17L20D6RJB6 530 aa16.68■□□□□ 0.26
TPM3-208ENST00000341485 SEC31AO94979 1220 aaKnown RBP16.68■□□□□ 0.26
TPM3-208ENST00000341485 EPHX2P34913 555 aa16.68■□□□□ 0.26
TPM3-208ENST00000341485 USP17L24Q0WX57 530 aa16.68■□□□□ 0.26
TPM3-208ENST00000341485 SPP2Q13103 211 aa16.68■□□□□ 0.26
TPM3-208ENST00000341485 USP17L6PQ6QN14 398 aa16.68■□□□□ 0.26
TPM3-208ENST00000341485 NAPGQ99747 312 aaPredicted RBP16.68■□□□□ 0.26
TPM3-208ENST00000341485 WDR18Q9BV38 432 aa16.68■□□□□ 0.26
TPM3-208ENST00000341485 NUP58Q9BVL2 599 aa16.68■□□□□ 0.26
TPM3-208ENST00000341485 ZSWIM4Q9H7M6 989 aa16.68■□□□□ 0.26
TPM3-208ENST00000341485 FBXO28Q9NVF7 368 aa16.68■□□□□ 0.26
TPM3-208ENST00000341485 TRIM10Q9UDY6 481 aa16.68■□□□□ 0.26
TPM3-208ENST00000341485 GLTPD2A6NH11 291 aa16.67■□□□□ 0.26
TPM3-208ENST00000341485 TRIM21P19474 475 aaKnown RBP16.67■□□□□ 0.26
TPM3-208ENST00000341485 CHMP4BP1P59074 171 aa16.67■□□□□ 0.26
TPM3-208ENST00000341485 HERVK_113P62684 666 aa16.67■□□□□ 0.26
TPM3-208ENST00000341485 EHHADHQ08426 723 aa16.67■□□□□ 0.26
TPM3-208ENST00000341485 TUBB2AQ13885 445 aa16.67■□□□□ 0.26
TPM3-208ENST00000341485 TSR1Q2NL82 804 aaKnown RBP16.67■□□□□ 0.26
TPM3-208ENST00000341485 UTP14CQ5TAP6 766 aaKnown RBP16.67■□□□□ 0.26
TPM3-208ENST00000341485 KRT26Q7Z3Y9 468 aa16.67■□□□□ 0.26
TPM3-208ENST00000341485 RETREG2Q8NC44 543 aa16.67■□□□□ 0.26
TPM3-208ENST00000341485 ZNF280CQ8ND82 737 aa16.67■□□□□ 0.26
TPM3-208ENST00000341485 DDX12PQ92771 950 aa16.67■□□□□ 0.26
TPM3-208ENST00000341485 ERGIC2Q96RQ1 377 aa16.67■□□□□ 0.26
TPM3-208ENST00000341485 TUBB2BQ9BVA1 445 aa16.67■□□□□ 0.26
TPM3-208ENST00000341485 PARD6BQ9BYG5 372 aa16.67■□□□□ 0.26
TPM3-208ENST00000341485 TANGO6Q9C0B7 1094 aa16.67■□□□□ 0.26
TPM3-208ENST00000341485 PUF60Q9UHX1 559 aaKnown RBP16.67■□□□□ 0.26
TPM3-208ENST00000341485 TAL1P17542 331 aaPredicted RBP16.66■□□□□ 0.26
TPM3-208ENST00000341485 DGKZQ13574 1117 aa16.66■□□□□ 0.26
TPM3-208ENST00000341485 MCTP2Q6DN12 878 aa16.66■□□□□ 0.26
TPM3-208ENST00000341485 GUF1Q8N442 669 aaKnown RBP16.66■□□□□ 0.26
TPM3-208ENST00000341485 CEP112Q8N8E3 955 aa16.66■□□□□ 0.26
TPM3-208ENST00000341485 ZHX2Q9Y6X8 837 aa16.66■□□□□ 0.26
TPM3-208ENST00000341485 TFRCP02786 760 aaKnown RBP16.66■□□□□ 0.26
TPM3-208ENST00000341485 IDEP14735 1019 aa16.66■□□□□ 0.26
TPM3-208ENST00000341485 GCFC2P16383 781 aaKnown RBP16.66■□□□□ 0.26
TPM3-208ENST00000341485 ZBED6P86452 979 aa16.66■□□□□ 0.26
TPM3-208ENST00000341485 GABPB1Q06547 395 aaPredicted RBP16.66■□□□□ 0.26
TPM3-208ENST00000341485 AP3B2Q13367 1082 aa16.66■□□□□ 0.26
TPM3-208ENST00000341485 NOL9Q5SY16 702 aaKnown RBP16.66■□□□□ 0.26
TPM3-208ENST00000341485 ANO3Q9BYT9 981 aa16.66■□□□□ 0.26
TPM3-208ENST00000341485 EMILIN3Q9NT22 766 aa16.66■□□□□ 0.26
TPM3-208ENST00000341485 GUCA1BQ9UMX6 200 aa16.66■□□□□ 0.26
TPM3-208ENST00000341485 PPP1R12BO60237 982 aaPredicted RBP16.65■□□□□ 0.26
TPM3-208ENST00000341485 USP2O75604 605 aaPredicted RBP16.65■□□□□ 0.26
TPM3-208ENST00000341485 VCAM1P19320 739 aa16.65■□□□□ 0.26
TPM3-208ENST00000341485 BACE1P56817 501 aa16.65■□□□□ 0.26
TPM3-208ENST00000341485 CC2D1AQ6P1N0 951 aaPredicted RBP16.65■□□□□ 0.26
TPM3-208ENST00000341485 DLK2Q6UY11 383 aa16.65■□□□□ 0.26
TPM3-208ENST00000341485 PRPF38AQ8NAV1 312 aaKnown RBP16.65■□□□□ 0.26
TPM3-208ENST00000341485 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.65■□□□□ 0.26
TPM3-208ENST00000341485 PCMTD1Q96MG8 357 aaPredicted RBP16.65■□□□□ 0.26
TPM3-208ENST00000341485 NAP1L4Q99733 375 aaKnown RBP16.65■□□□□ 0.26
TPM3-208ENST00000341485 ST7Q9NRC1 585 aa16.65■□□□□ 0.26
TPM3-208ENST00000341485 SPDYE3A6NKU9 549 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms