RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 SHTN1A0MZ66 631 aa11.46□□□□□ -0.57
LIMA1-201ENST00000341247 ZNF263O14978 683 aa11.46□□□□□ -0.57
LIMA1-201ENST00000341247 AKR1B10O60218 316 aa11.46□□□□□ -0.57
LIMA1-201ENST00000341247 GCFC2P16383 781 aaKnown RBP11.46□□□□□ -0.57
LIMA1-201ENST00000341247 EIF4A3P38919 411 aaKnown RBP11.46□□□□□ -0.57
LIMA1-201ENST00000341247 CASP5P51878 434 aa11.46□□□□□ -0.57
LIMA1-201ENST00000341247 TDRD12Q587J7 1177 aaKnown RBP11.46□□□□□ -0.57
LIMA1-201ENST00000341247 TATDN1Q6P1N9 297 aa11.46□□□□□ -0.57
LIMA1-201ENST00000341247 CEP112Q8N8E3 955 aa11.46□□□□□ -0.57
LIMA1-201ENST00000341247 FLAD1Q8NFF5 587 aa11.46□□□□□ -0.57
LIMA1-201ENST00000341247 NUP58Q9BVL2 599 aa11.46□□□□□ -0.57
LIMA1-201ENST00000341247 MLXIPQ9HAP2 919 aa11.46□□□□□ -0.57
LIMA1-201ENST00000341247 PKD2L1Q9P0L9 805 aa11.46□□□□□ -0.57
LIMA1-201ENST00000341247 RSPH10B2B2RC85 870 aa11.46□□□□□ -0.57
LIMA1-201ENST00000341247 RSPH10BP0C881 870 aa11.46□□□□□ -0.57
LIMA1-201ENST00000341247 CYP11B2P19099 503 aa11.46□□□□□ -0.57
LIMA1-201ENST00000341247 MRPS25P82663 173 aaKnown RBP11.46□□□□□ -0.57
LIMA1-201ENST00000341247 DEFB132Q7Z7B7 95 aa11.46□□□□□ -0.57
LIMA1-201ENST00000341247 PIGOQ8TEQ8 1089 aa11.46□□□□□ -0.57
LIMA1-201ENST00000341247 CNKSR1Q969H4 720 aa11.46□□□□□ -0.57
LIMA1-201ENST00000341247 MKL1Q969V6 931 aa11.46□□□□□ -0.57
LIMA1-201ENST00000341247 ARFGAP3Q9NP61 516 aa11.46□□□□□ -0.57
LIMA1-201ENST00000341247 JADE2Q9NQC1 790 aa11.46□□□□□ -0.57
LIMA1-201ENST00000341247 ARHGAP20Q9P2F6 1191 aa11.46□□□□□ -0.57
LIMA1-201ENST00000341247 SERPINA10Q9UK55 444 aa11.46□□□□□ -0.57
LIMA1-201ENST00000341247 PRR12Q9ULL5 1215 aa11.46□□□□□ -0.57
LIMA1-201ENST00000341247 ZBTB39O15060 712 aa11.46□□□□□ -0.58
LIMA1-201ENST00000341247 ZMYND10O75800 440 aa11.46□□□□□ -0.58
LIMA1-201ENST00000341247 KRT83P78385 493 aa11.46□□□□□ -0.58
LIMA1-201ENST00000341247 SPA17Q15506 151 aa11.46□□□□□ -0.58
LIMA1-201ENST00000341247 CC2D2BQ6DHV5 1058 aa11.46□□□□□ -0.58
LIMA1-201ENST00000341247 CCDC65Q8IXS2 484 aa11.46□□□□□ -0.58
LIMA1-201ENST00000341247 ERGIC2Q96RQ1 377 aa11.46□□□□□ -0.58
LIMA1-201ENST00000341247 CAMKK2Q96RR4 588 aa11.46□□□□□ -0.58
LIMA1-201ENST00000341247 NT5C3AQ9H0P0 336 aa11.46□□□□□ -0.58
LIMA1-201ENST00000341247 IKZF4Q9H2S9 585 aa11.46□□□□□ -0.58
LIMA1-201ENST00000341247 HAUS4Q9H6D7 363 aa11.46□□□□□ -0.58
LIMA1-201ENST00000341247 ANKZF1Q9H8Y5 726 aa11.46□□□□□ -0.58
LIMA1-201ENST00000341247 KRT86O43790 486 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 ZRANB2O95218 330 aaKnown RBP eCLIP11.45□□□□□ -0.58
LIMA1-201ENST00000341247 NAP1L1P55209 391 aaKnown RBP11.45□□□□□ -0.58
LIMA1-201ENST00000341247 CTTNQ14247 550 aaKnown RBP11.45□□□□□ -0.58
LIMA1-201ENST00000341247 LARGE2Q8N3Y3 721 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 KCNMB3Q9NPA1 279 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 EMILIN3Q9NT22 766 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 TMOD2Q9NZR1 351 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 SIK3Q9Y2K2 1263 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 PRPF6O94906 941 aaKnown RBP11.45□□□□□ -0.58
LIMA1-201ENST00000341247 TBC1D8O95759 1140 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 KCNA3P22001 575 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 MEA1Q16626 185 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 ARSHQ5FYA8 562 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 CAGE1Q8TC20 777 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 SCFD1Q8WVM8 642 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 GDAP1L1Q96MZ0 367 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 GLIS2Q9BZE0 524 aaPredicted RBP11.45□□□□□ -0.58
LIMA1-201ENST00000341247 TMEM39BQ9GZU3 492 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 BHMT2Q9H2M3 363 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 FBXO28Q9NVF7 368 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 PSMD14O00487 310 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 PPP1R2P41236 205 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 GYS2P54840 703 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 FKBP3Q00688 224 aaKnown RBP11.45□□□□□ -0.58
LIMA1-201ENST00000341247 LRRC63Q05C16 580 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 GFPT1Q06210 699 aaPredicted RBP11.45□□□□□ -0.58
LIMA1-201ENST00000341247 DMTNQ08495 405 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 SLC15A2Q16348 729 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 STYK1Q6J9G0 422 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 SFR1Q86XK3 245 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 NEK11Q8NG66 645 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 LSM14BQ9BX40 385 aaKnown RBP11.45□□□□□ -0.58
LIMA1-201ENST00000341247 IFIH1Q9BYX4 1025 aaKnown RBP11.45□□□□□ -0.58
LIMA1-201ENST00000341247 LRRC27Q9C0I9 530 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 COL4A3BPQ9Y5P4 624 aa11.45□□□□□ -0.58
LIMA1-201ENST00000341247 ERICH4A6NGS2 130 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 OPLAHO14841 1288 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 MSH4O15457 936 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 MOCS3O95396 460 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 FGFR1OPO95684 399 aaKnown RBP11.44□□□□□ -0.58
LIMA1-201ENST00000341247 USP11P51784 963 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 POLR2FP61218 127 aaKnown RBP11.44□□□□□ -0.58
LIMA1-201ENST00000341247 KIF5AQ12840 1032 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 ADAM9Q13443 819 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 LONRF2Q1L5Z9 754 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 MMS19Q96T76 1030 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 KDM3AQ9Y4C1 1321 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 DDX39AO00148 427 aaKnown RBP11.44□□□□□ -0.58
LIMA1-201ENST00000341247 EML1O00423 815 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 BUB1O43683 1085 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 RXRBP28702 533 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 CXCR5P32302 372 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 EPS15P42566 896 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 KIF11P52732 1056 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 EHHADHQ08426 723 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 KCNMA1Q12791 1236 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 DLGAP5Q15398 846 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 DNAAF5Q86Y56 855 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 TPH2Q8IWU9 490 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 RETREG2Q8NC44 543 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 ETNPPLQ8TBG4 499 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms