RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 LIN9Q5TKA1 542 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 KHDRBS2Q5VWX1 349 aaKnown RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 FAM160B1Q5W0V3 765 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 SAMD7Q7Z3H4 446 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 PCSK9Q8NBP7 692 aaKnown RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 KLHDC4Q8TBB5 520 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ENOX1Q8TC92 643 aaKnown RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ACSF2Q96CM8 615 aaPredicted RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 FHDC1Q9C0D6 1143 aaPredicted RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 LNPKQ9C0E8 428 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 COL15A1P39059 1388 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 LRRIQ3A6PVS8 624 aaPredicted RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 GOLGA8RI6L899 631 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 PDE8AO60658 829 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 HDAC4P56524 1084 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 BIRC3Q13489 604 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ARHGEF25Q86VW2 580 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 CPXCR1Q8N123 301 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ASZ1Q8WWH4 475 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ESR2Q92731 530 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 FAM212AQ96EL1 285 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 NDEL1Q9GZM8 345 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 C10orf88Q9H8K7 445 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ENTPD7Q9NQZ7 604 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 UVRAGQ9P2Y5 699 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 DCDC2Q9UHG0 476 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 LEMD3Q9Y2U8 911 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ATP6V0A2Q9Y487 856 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 NRXN3Q9Y4C0 1643 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 RASSF10A6NK89 507 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 TCP10L2B9ZVM9 353 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 ATP5BP06576 529 aaKnown RBP3.56□□□□□ -1.84
CSMD3-202ENST00000339701 P4HBP07237 508 aaKnown RBP3.56□□□□□ -1.84
CSMD3-202ENST00000339701 STAG3L1P0CL83 205 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 OAS2P29728 719 aaKnown RBP3.56□□□□□ -1.84
CSMD3-202ENST00000339701 CASP14P31944 242 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 ARHGDIAP52565 204 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 MFSD14BQ5SR56 506 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 CNNM4Q6P4Q7 775 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 CDKL2Q92772 493 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 MAK16Q9BXY0 300 aaKnown RBP3.56□□□□□ -1.84
CSMD3-202ENST00000339701 VAT1LQ9HCJ6 419 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 XDHP47989 1333 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 PRR23AA6NEV1 266 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 CHUKO15111 745 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 CCT6AP40227 531 aaKnown RBP3.56□□□□□ -1.84
CSMD3-202ENST00000339701 RGS2P41220 211 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 ARHGAP9Q9BRR9 750 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 GINM1Q9NU53 330 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 MAGEB6P1A0A0J9YX57 407 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 MYL3P08590 195 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 TPD52P55327 224 aaPredicted RBP3.56□□□□□ -1.84
CSMD3-202ENST00000339701 CHD1LQ86WJ1 897 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 BBS5Q8N3I7 341 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 STX19Q8N4C7 294 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 EXOC6Q8TAG9 804 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 KIFC2Q96AC6 838 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 CABS1Q96KC9 395 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 DYRK4Q9NR20 520 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 DDX41Q9UJV9 622 aaKnown RBP3.56□□□□□ -1.84
CSMD3-202ENST00000339701 IPPQ9Y573 584 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 ATP8B3O60423 1300 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 ENO4A6NNW6 628 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 AP1G2O75843 785 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 ESRRBO95718 433 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 FBLN1P23142 703 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 IL13P35225 146 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 SEL1L2Q5TEA6 688 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 KRT80Q6KB66 452 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 MFSD6Q6ZSS7 791 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 OR9Q1Q8NGQ5 310 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 KIF12Q96FN5 646 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 CDHR1Q96JP9 859 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 ZNF536O15090 1300 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 HARSP12081 509 aaKnown RBP3.56□□□□□ -1.84
CSMD3-202ENST00000339701 INPP5BP32019 993 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 KRT2P35908 639 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 NPY2RP49146 381 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 RPL19P84098 196 aaKnown RBP3.56□□□□□ -1.84
CSMD3-202ENST00000339701 INAVAQ3KP66 663 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 KAZNQ674X7 775 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 HDDC3Q8N4P3 179 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 ATL2Q8NHH9 583 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 TRIM63Q969Q1 353 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 HAUS4Q9H6D7 363 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 JADE2Q9NQC1 790 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 USP31Q70CQ4 1352 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 TRPA1O75762 1119 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 NAA20P61599 178 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 BFSP2Q13515 415 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 E2F4Q16254 413 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 TBC1D10BQ4KMP7 808 aaPredicted RBP3.56□□□□□ -1.84
CSMD3-202ENST00000339701 NME8Q8N427 588 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 MXD3Q9BW11 206 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 PLEKHA4Q9H4M7 779 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 SLC28A3Q9HAS3 691 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 FBXO40Q9UH90 709 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 PCDHB12Q9Y5F1 795 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 USP6P35125 1406 aa3.56□□□□□ -1.84
CSMD3-202ENST00000339701 KDM3AQ9Y4C1 1321 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms