RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 CCL5P13501 91 aa25.07■■□□□ 1.6
SDC3-202ENST00000339394 SLFN12Q8IYM2 578 aa25.07■■□□□ 1.6
SDC3-202ENST00000339394 GIMAP8Q8ND71 665 aaPredicted RBP25.07■■□□□ 1.6
SDC3-202ENST00000339394 RIT2Q99578 217 aa25.07■■□□□ 1.6
SDC3-202ENST00000339394 RNF208Q9H0X6 261 aa25.07■■□□□ 1.6
SDC3-202ENST00000339394 PAK6Q9NQU5 681 aaPredicted RBP25.07■■□□□ 1.6
SDC3-202ENST00000339394 POLR3EQ9NVU0 708 aa25.07■■□□□ 1.6
SDC3-202ENST00000339394 PSMD10O75832 226 aa25.06■■□□□ 1.6
SDC3-202ENST00000339394 BAG4O95429 457 aaKnown RBP25.06■■□□□ 1.6
SDC3-202ENST00000339394 ARHGAP1Q07960 439 aa25.06■■□□□ 1.6
SDC3-202ENST00000339394 LRCH2Q5VUJ6 765 aa25.06■■□□□ 1.6
SDC3-202ENST00000339394 LHX8Q68G74 356 aa25.06■■□□□ 1.6
SDC3-202ENST00000339394 ATL3Q6DD88 541 aa25.06■■□□□ 1.6
SDC3-202ENST00000339394 METTL7BQ6UX53 244 aa25.06■■□□□ 1.6
SDC3-202ENST00000339394 DHX37Q8IY37 1157 aaKnown RBP25.06■■□□□ 1.6
SDC3-202ENST00000339394 SDF4Q9BRK5 362 aa25.06■■□□□ 1.6
SDC3-202ENST00000339394 MLXIPQ9HAP2 919 aa25.06■■□□□ 1.6
SDC3-202ENST00000339394 CEP131Q9UPN4 1083 aa25.06■■□□□ 1.6
SDC3-202ENST00000339394 Q9Y3F1 56 aa25.06■■□□□ 1.6
SDC3-202ENST00000339394 NFASCO94856 1347 aa25.06■■□□□ 1.6
SDC3-202ENST00000339394 POTEFA5A3E0 1075 aa25.05■■□□□ 1.6
SDC3-202ENST00000339394 LAD1O00515 517 aa25.05■■□□□ 1.6
SDC3-202ENST00000339394 DYNC1LI2O43237 492 aaPredicted RBP25.05■■□□□ 1.6
SDC3-202ENST00000339394 MSCO60682 206 aa25.05■■□□□ 1.6
SDC3-202ENST00000339394 FARP2O94887 1054 aaPredicted RBP25.05■■□□□ 1.6
SDC3-202ENST00000339394 BMP15O95972 392 aa25.05■■□□□ 1.6
SDC3-202ENST00000339394 GH1P01241 217 aa25.05■■□□□ 1.6
SDC3-202ENST00000339394 OR52Z1P0C646 297 aa25.05■■□□□ 1.6
SDC3-202ENST00000339394 NASPP49321 788 aaPredicted RBP25.05■■□□□ 1.6
SDC3-202ENST00000339394 ATP2C1P98194 919 aaPredicted RBP25.05■■□□□ 1.6
SDC3-202ENST00000339394 PTPAQ15257 358 aa25.05■■□□□ 1.6
SDC3-202ENST00000339394 COL13A1Q5TAT6 717 aaPredicted RBP25.05■■□□□ 1.6
SDC3-202ENST00000339394 TLK2Q86UE8 772 aa25.05■■□□□ 1.6
SDC3-202ENST00000339394 CFAP45Q9UL16 551 aa25.05■■□□□ 1.6
SDC3-202ENST00000339394 DDX39AO00148 427 aaKnown RBP25.05■■□□□ 1.6
SDC3-202ENST00000339394 GAS7O60861 476 aa25.05■■□□□ 1.6
SDC3-202ENST00000339394 TXKP42681 527 aa25.05■■□□□ 1.6
SDC3-202ENST00000339394 LAMC2Q13753 1193 aa25.05■■□□□ 1.6
SDC3-202ENST00000339394 EMID1Q96A84 441 aaPredicted RBP25.05■■□□□ 1.6
SDC3-202ENST00000339394 JPH1Q9HDC5 661 aaPredicted RBP25.05■■□□□ 1.6
SDC3-202ENST00000339394 HSDL1Q3SXM5 330 aa25.04■■□□□ 1.6
SDC3-202ENST00000339394 OR6J1Q8NGC5 347 aa25.04■■□□□ 1.6
SDC3-202ENST00000339394 TTC12Q9H892 705 aaPredicted RBP25.04■■□□□ 1.6
SDC3-202ENST00000339394 XPNPEP3Q9NQH7 507 aa25.04■■□□□ 1.6
SDC3-202ENST00000339394 SLC9A2Q9UBY0 812 aa25.04■■□□□ 1.6
SDC3-202ENST00000339394 PCDHA12Q9UN75 941 aa25.04■■□□□ 1.6
SDC3-202ENST00000339394 TELO2Q9Y4R8 837 aa25.04■■□□□ 1.6
SDC3-202ENST00000339394 KRT85P78386 507 aa25.03■■□□□ 1.6
SDC3-202ENST00000339394 SP4Q02446 784 aa25.03■■□□□ 1.6
SDC3-202ENST00000339394 SLC39A14Q15043 492 aa25.03■■□□□ 1.6
SDC3-202ENST00000339394 LINC00301Q8NCQ3 95 aa25.03■■□□□ 1.6
SDC3-202ENST00000339394 SPATA33Q96N06 139 aa25.03■■□□□ 1.6
SDC3-202ENST00000339394 DEFB118Q96PH6 123 aa25.03■■□□□ 1.6
SDC3-202ENST00000339394 TEKT3Q9BXF9 490 aa25.03■■□□□ 1.6
SDC3-202ENST00000339394 AP5M1Q9H0R1 490 aa25.03■■□□□ 1.6
SDC3-202ENST00000339394 KIAA1217Q5T5P2 1943 aa25.02■■□□□ 1.6
SDC3-202ENST00000339394 PGK1P00558 417 aa25.02■■□□□ 1.6
SDC3-202ENST00000339394 PRPHP41219 470 aa25.02■■□□□ 1.6
SDC3-202ENST00000339394 IRX5P78411 483 aaPredicted RBP25.02■■□□□ 1.6
SDC3-202ENST00000339394 TNPO1Q92973 898 aaKnown RBP25.02■■□□□ 1.6
SDC3-202ENST00000339394 VAV3Q9UKW4 847 aa25.02■■□□□ 1.6
SDC3-202ENST00000339394 CCNE2O96020 404 aa25.01■■□□□ 1.59
SDC3-202ENST00000339394 NCLP19338 710 aaKnown RBP25.01■■□□□ 1.59
SDC3-202ENST00000339394 TECP42680 631 aa25.01■■□□□ 1.59
SDC3-202ENST00000339394 GJA9P57773 515 aa25.01■■□□□ 1.59
SDC3-202ENST00000339394 IL17AQ16552 155 aa25.01■■□□□ 1.59
SDC3-202ENST00000339394 ARL6IP4Q66PJ3 421 aaKnown RBP25.01■■□□□ 1.59
SDC3-202ENST00000339394 B3GNT9Q6UX72 402 aa25.01■■□□□ 1.59
SDC3-202ENST00000339394 AFG1LQ8WV93 481 aa25.01■■□□□ 1.59
SDC3-202ENST00000339394 SYNRGQ9UMZ2 1314 aa25.01■■□□□ 1.59
SDC3-202ENST00000339394 ADAMTS4O75173 837 aa25.01■■□□□ 1.59
SDC3-202ENST00000339394 YEATS4O95619 227 aa25.01■■□□□ 1.59
SDC3-202ENST00000339394 MARCKSP29966 332 aaPredicted RBP25.01■■□□□ 1.59
SDC3-202ENST00000339394 KRT76Q01546 638 aa25.01■■□□□ 1.59
SDC3-202ENST00000339394 SPIRE1Q08AE8 756 aa25.01■■□□□ 1.59
SDC3-202ENST00000339394 STK38Q15208 465 aa25.01■■□□□ 1.59
SDC3-202ENST00000339394 DTHD1Q6ZMT9 781 aa25.01■■□□□ 1.59
SDC3-202ENST00000339394 PPTC7Q8NI37 304 aa25.01■■□□□ 1.59
SDC3-202ENST00000339394 UPF3AQ9H1J1 476 aaKnown RBP25.01■■□□□ 1.59
SDC3-202ENST00000339394 UNC45AQ9H3U1 944 aa25.01■■□□□ 1.59
SDC3-202ENST00000339394 SPC25Q9HBM1 224 aa25.01■■□□□ 1.59
SDC3-202ENST00000339394 A6NJR5 290 aa25■■□□□ 1.59
SDC3-202ENST00000339394 NOP56O00567 594 aaKnown RBP25■■□□□ 1.59
SDC3-202ENST00000339394 CTAGE5O15320 804 aa25■■□□□ 1.59
SDC3-202ENST00000339394 CHMP2AO43633 222 aa25■■□□□ 1.59
SDC3-202ENST00000339394 C6orf222P0C671 652 aaPredicted RBP25■■□□□ 1.59
SDC3-202ENST00000339394 PPP2R5CQ13362 524 aa25■■□□□ 1.59
SDC3-202ENST00000339394 ZNF746Q6NUN9 644 aaPredicted RBP25■■□□□ 1.59
SDC3-202ENST00000339394 GPR20Q99678 358 aa25■■□□□ 1.59
SDC3-202ENST00000339394 TCEAL9Q9UHQ7 104 aa25■■□□□ 1.59
SDC3-202ENST00000339394 MYADML2A6NDP7 307 aa24.99■■□□□ 1.59
SDC3-202ENST00000339394 SPTLC2O15270 562 aa24.99■■□□□ 1.59
SDC3-202ENST00000339394 GJB1P08034 283 aa24.99■■□□□ 1.59
SDC3-202ENST00000339394 FXR2P51116 673 aaKnown RBP eCLIP24.99■■□□□ 1.59
SDC3-202ENST00000339394 ACTR2P61160 394 aa24.99■■□□□ 1.59
SDC3-202ENST00000339394 NKX3-2P78367 333 aa24.99■■□□□ 1.59
SDC3-202ENST00000339394 FSCN1Q16658 493 aaKnown RBP24.99■■□□□ 1.59
SDC3-202ENST00000339394 RCOR1Q9UKL0 485 aa24.99■■□□□ 1.59
SDC3-202ENST00000339394 MORC2Q9Y6X9 1032 aaPredicted RBP24.99■■□□□ 1.59
SDC3-202ENST00000339394 VWA3AA6NCI4 1184 aa24.98■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms