RNA–Protein interactions for RNA: ENST00000330374.6

VMA21-201, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMA21, Length 4,717 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-201ENST00000330374 ANAPC4Q9UJX5 808 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 NIP7Q9Y221 180 aaKnown RBP eCLIP8.66□□□□□ -1.02
VMA21-201ENST00000330374 GLI3P10071 1580 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 POTEMA6NI47 508 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 CYP19A1P11511 503 aaPredicted RBP8.66□□□□□ -1.02
VMA21-201ENST00000330374 PRDX5P30044 214 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 ITGB3BPQ13352 177 aaPredicted RBP8.66□□□□□ -1.02
VMA21-201ENST00000330374 SREK1Q8WXA9 508 aaKnown RBP8.66□□□□□ -1.02
VMA21-201ENST00000330374 GOPCQ9HD26 462 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 DCP1AQ9NPI6 582 aaPredicted RBP8.66□□□□□ -1.02
VMA21-201ENST00000330374 TMEM260Q9NX78 707 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 CEP83Q9Y592 693 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 A0A087X0T9 212 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 A0A1W2PQJ5 194 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 DNM1LO00429 736 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 MARCH6O60337 910 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 FAM228BP0C875 321 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 AMPD3Q01432 767 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 SKIV2LQ15477 1246 aaKnown RBP8.65□□□□□ -1.02
VMA21-201ENST00000330374 KRT71Q3SY84 523 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 CAVIN4Q5BKX8 364 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 CCDC84Q86UT8 332 aaPredicted RBP8.65□□□□□ -1.02
VMA21-201ENST00000330374 RDH13Q8NBN7 331 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 BAP1Q92560 729 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 CCSER1Q9C0I3 900 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 BAIAP2L1Q9UHR4 511 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 SAP30BPQ9UHR5 308 aaKnown RBP8.65□□□□□ -1.02
VMA21-201ENST00000330374 FBXL5Q9UKA1 691 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 GMNCA6NCL1 334 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 HGSO14964 777 aaPredicted RBP8.65□□□□□ -1.02
VMA21-201ENST00000330374 PRLRP16471 622 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 MAGOHP61326 146 aaKnown RBP8.65□□□□□ -1.02
VMA21-201ENST00000330374 TNNC1P63316 161 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 MECOMQ03112 1051 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 IFFO1Q0D2I5 559 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 KLHL30Q0D2K2 578 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 PRPF4BQ13523 1007 aaKnown RBP8.65□□□□□ -1.02
VMA21-201ENST00000330374 NEDD9Q14511 834 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 FAM83BQ5T0W9 1011 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 RCSD1Q6JBY9 416 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 MAGOHBQ96A72 148 aaKnown RBP8.65□□□□□ -1.02
VMA21-201ENST00000330374 NEUROG2Q9H2A3 272 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 LRRC4CQ9HCJ2 640 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 CAMTA1Q9Y6Y1 1673 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 CYTH3O43739 400 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 SNCBQ16143 134 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 ZSCAN29Q8IWY8 852 aaPredicted RBP8.65□□□□□ -1.02
VMA21-201ENST00000330374 CELF4Q9BZC1 486 aaKnown RBP8.65□□□□□ -1.02
VMA21-201ENST00000330374 CRNKL1Q9BZJ0 848 aaKnown RBP8.65□□□□□ -1.02
VMA21-201ENST00000330374 PLSCR2Q9NRY7 297 aa8.65□□□□□ -1.02
VMA21-201ENST00000330374 CNOT8Q9UFF9 292 aaKnown RBP8.65□□□□□ -1.02
VMA21-201ENST00000330374 SMCO2A6NFE2 343 aa8.65□□□□□ -1.03
VMA21-201ENST00000330374 DAPK3O43293 454 aa8.65□□□□□ -1.03
VMA21-201ENST00000330374 TLR2O60603 784 aa8.65□□□□□ -1.03
VMA21-201ENST00000330374 ELF1P32519 619 aa8.65□□□□□ -1.03
VMA21-201ENST00000330374 CDK17Q00537 523 aa8.65□□□□□ -1.03
VMA21-201ENST00000330374 RPS6KA1Q15418 735 aa8.65□□□□□ -1.03
VMA21-201ENST00000330374 SLC35G1Q2M3R5 365 aa8.65□□□□□ -1.03
VMA21-201ENST00000330374 TBCKQ8TEA7 893 aa8.65□□□□□ -1.03
VMA21-201ENST00000330374 OSBPL7Q9BZF2 842 aa8.65□□□□□ -1.03
VMA21-201ENST00000330374 AMACRQ9UHK6 382 aa8.65□□□□□ -1.03
VMA21-201ENST00000330374 GGT7Q9UJ14 662 aa8.65□□□□□ -1.03
VMA21-201ENST00000330374 FLT1P17948 1338 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 hCG_2014768A0A024R1R8 64 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 TSPY3P0CV98 308 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 TSPY8P0CW00 308 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 ACTN1P12814 892 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 ITIH3Q06033 890 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 CYB5D1Q6P9G0 228 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 TTC16Q8NEE8 873 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 SELENOSQ9BQE4 189 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 UBA5Q9GZZ9 404 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 CCDC113Q9H0I3 377 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 SKAP2O75563 359 aaPredicted RBP8.64□□□□□ -1.03
VMA21-201ENST00000330374 ITGA4P13612 1032 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 COPB2P35606 906 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 SMTNP53814 917 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 CLNS1AP54105 237 aaKnown RBP8.64□□□□□ -1.03
VMA21-201ENST00000330374 KCNMA1Q12791 1236 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 NAA25Q14CX7 972 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 CDC37Q16543 378 aaPredicted RBP8.64□□□□□ -1.03
VMA21-201ENST00000330374 GLE1Q53GS7 698 aaKnown RBP8.64□□□□□ -1.03
VMA21-201ENST00000330374 HGSNATQ68CP4 663 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 SMIM5Q71RC9 77 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 PNMA8AQ86V59 439 aaPredicted RBP8.64□□□□□ -1.03
VMA21-201ENST00000330374 CACNA2D3Q8IZS8 1091 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 SEC16BQ96JE7 1060 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 NUDT12Q9BQG2 462 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 BRIP1Q9BX63 1249 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 TAF1DQ9H5J8 278 aaPredicted RBP8.64□□□□□ -1.03
VMA21-201ENST00000330374 TMBIM4Q9HC24 238 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 LMTK3Q96Q04 1460 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 KIF13AQ9H1H9 1805 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 A6NNZ2 444 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 NONOQ15233 471 aaKnown RBP eCLIP8.64□□□□□ -1.03
VMA21-201ENST00000330374 PPP1R7Q15435 360 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 TUBB8Q3ZCM7 444 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 FIGNQ5HY92 759 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 CENPPQ6IPU0 288 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 TMED8Q6PL24 325 aaPredicted RBP8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms