RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 PHKA1P46020 1223 aa18.76■□□□□ 0.59
SYNPO-201ENST00000307662 PDCD2Q16342 344 aaPredicted RBP18.76■□□□□ 0.59
SYNPO-201ENST00000307662 PROSER3Q2NL68 480 aa18.76■□□□□ 0.59
SYNPO-201ENST00000307662 PI4K2BQ8TCG2 481 aa18.76■□□□□ 0.59
SYNPO-201ENST00000307662 USP40Q9NVE5 1235 aa18.76■□□□□ 0.59
SYNPO-201ENST00000307662 DIS3Q9Y2L1 958 aaKnown RBP18.76■□□□□ 0.59
SYNPO-201ENST00000307662 SCINQ9Y6U3 715 aa18.76■□□□□ 0.59
SYNPO-201ENST00000307662 CPP00450 1065 aa18.76■□□□□ 0.59
SYNPO-201ENST00000307662 MRPL11Q9Y3B7 192 aaKnown RBP18.76■□□□□ 0.59
SYNPO-201ENST00000307662 FOSP01100 380 aaPredicted RBP18.75■□□□□ 0.59
SYNPO-201ENST00000307662 MRFAP1Q9Y605 127 aa18.75■□□□□ 0.59
SYNPO-201ENST00000307662 KRT26Q7Z3Y9 468 aa18.75■□□□□ 0.59
SYNPO-201ENST00000307662 ZC3H18Q86VM9 953 aaKnown RBP18.75■□□□□ 0.59
SYNPO-201ENST00000307662 ZBTB8OSQ8IWT0 167 aa18.75■□□□□ 0.59
SYNPO-201ENST00000307662 USP6P35125 1406 aa18.75■□□□□ 0.59
SYNPO-201ENST00000307662 PRPF3O43395 683 aaKnown RBP18.75■□□□□ 0.59
SYNPO-201ENST00000307662 LRRC63Q05C16 580 aa18.75■□□□□ 0.59
SYNPO-201ENST00000307662 PPP1R2P3Q6NXS1 205 aa18.75■□□□□ 0.59
SYNPO-201ENST00000307662 NLRP14Q86W24 1093 aa18.75■□□□□ 0.59
SYNPO-201ENST00000307662 PARP9Q8IXQ6 854 aa18.75■□□□□ 0.59
SYNPO-201ENST00000307662 POMGNT1Q8WZA1 660 aa18.75■□□□□ 0.59
SYNPO-201ENST00000307662 YIPF3Q9GZM5 350 aa18.75■□□□□ 0.59
SYNPO-201ENST00000307662 PCDHB4Q9Y5E5 795 aa18.75■□□□□ 0.59
SYNPO-201ENST00000307662 CREB3O43889 395 aa18.75■□□□□ 0.59
SYNPO-201ENST00000307662 PDE8BO95263 885 aa18.75■□□□□ 0.59
SYNPO-201ENST00000307662 KRT1P04264 644 aa18.75■□□□□ 0.59
SYNPO-201ENST00000307662 BEND6Q5SZJ8 279 aaPredicted RBP18.75■□□□□ 0.59
SYNPO-201ENST00000307662 NME8Q8N427 588 aa18.75■□□□□ 0.59
SYNPO-201ENST00000307662 DACT3Q96B18 629 aaPredicted RBP18.75■□□□□ 0.59
SYNPO-201ENST00000307662 GOLPH3LQ9H4A5 285 aa18.75■□□□□ 0.59
SYNPO-201ENST00000307662 PODXLO00592 558 aa18.74■□□□□ 0.59
SYNPO-201ENST00000307662 FGGP02679 453 aa18.74■□□□□ 0.59
SYNPO-201ENST00000307662 ADD2P35612 726 aa18.74■□□□□ 0.59
SYNPO-201ENST00000307662 SLC17A8Q8NDX2 589 aa18.74■□□□□ 0.59
SYNPO-201ENST00000307662 YY1AP1Q9H869 796 aa18.74■□□□□ 0.59
SYNPO-201ENST00000307662 ANLNQ9NQW6 1124 aa18.74■□□□□ 0.59
SYNPO-201ENST00000307662 HESX1Q9UBX0 185 aa18.74■□□□□ 0.59
SYNPO-201ENST00000307662 WDR91A4D1P6 747 aa18.74■□□□□ 0.59
SYNPO-201ENST00000307662 KIF1CO43896 1103 aaKnown RBP18.74■□□□□ 0.59
SYNPO-201ENST00000307662 PLS3P13797 630 aa18.74■□□□□ 0.59
SYNPO-201ENST00000307662 TRIP13Q15645 432 aaPredicted RBP18.74■□□□□ 0.59
SYNPO-201ENST00000307662 RAPH1Q70E73 1250 aa18.74■□□□□ 0.59
SYNPO-201ENST00000307662 SYT2Q8N9I0 419 aaPredicted RBP18.74■□□□□ 0.59
SYNPO-201ENST00000307662 SERPINI1Q99574 410 aa18.74■□□□□ 0.59
SYNPO-201ENST00000307662 PUS3Q9BZE2 481 aaKnown RBP18.74■□□□□ 0.59
SYNPO-201ENST00000307662 TESPA1A2RU30 521 aaPredicted RBP18.74■□□□□ 0.59
SYNPO-201ENST00000307662 A6NJR5 290 aa18.74■□□□□ 0.59
SYNPO-201ENST00000307662 ACTN3Q08043 901 aaPredicted RBP18.74■□□□□ 0.59
SYNPO-201ENST00000307662 RSBN1LQ6PCB5 846 aaPredicted RBP18.74■□□□□ 0.59
SYNPO-201ENST00000307662 GSPT2Q8IYD1 628 aaKnown RBP18.74■□□□□ 0.59
SYNPO-201ENST00000307662 ZNF277Q9NRM2 450 aaPredicted RBP18.74■□□□□ 0.59
SYNPO-201ENST00000307662 THRAP3Q9Y2W1 955 aaKnown RBP18.74■□□□□ 0.59
SYNPO-201ENST00000307662 PALMO75781 387 aa18.74■□□□□ 0.59
SYNPO-201ENST00000307662 ACSL3O95573 720 aa18.74■□□□□ 0.59
SYNPO-201ENST00000307662 TMOD1P28289 359 aa18.74■□□□□ 0.59
SYNPO-201ENST00000307662 CDC25AP30304 524 aa18.74■□□□□ 0.59
SYNPO-201ENST00000307662 HDLBPQ00341 1268 aaKnown RBP18.74■□□□□ 0.59
SYNPO-201ENST00000307662 FAM81BQ96LP2 452 aa18.74■□□□□ 0.59
SYNPO-201ENST00000307662 TRIM56Q9BRZ2 755 aaKnown RBP18.74■□□□□ 0.59
SYNPO-201ENST00000307662 SMYD2Q9NRG4 433 aa18.74■□□□□ 0.59
SYNPO-201ENST00000307662 MAP3K15Q6ZN16 1313 aa18.74■□□□□ 0.59
SYNPO-201ENST00000307662 SPAG7O75391 227 aa18.73■□□□□ 0.59
SYNPO-201ENST00000307662 TOM1L1O75674 476 aa18.73■□□□□ 0.59
SYNPO-201ENST00000307662 TMEM191BP0C7N4 346 aa18.73■□□□□ 0.59
SYNPO-201ENST00000307662 PLCG1P19174 1290 aa18.73■□□□□ 0.59
SYNPO-201ENST00000307662 ALKBH5Q6P6C2 394 aaKnown RBP18.73■□□□□ 0.59
SYNPO-201ENST00000307662 TMEM60Q9H2L4 133 aa18.73■□□□□ 0.59
SYNPO-201ENST00000307662 PTCH1Q13635 1447 aa18.73■□□□□ 0.59
SYNPO-201ENST00000307662 MCF2LO15068 1137 aa18.73■□□□□ 0.59
SYNPO-201ENST00000307662 ATG16L1Q676U5 607 aa18.73■□□□□ 0.59
SYNPO-201ENST00000307662 MAML1Q92585 1016 aa18.73■□□□□ 0.59
SYNPO-201ENST00000307662 EMILIN3Q9NT22 766 aa18.73■□□□□ 0.59
SYNPO-201ENST00000307662 CAPN9O14815 690 aa18.73■□□□□ 0.59
SYNPO-201ENST00000307662 GCFC2P16383 781 aaKnown RBP18.73■□□□□ 0.59
SYNPO-201ENST00000307662 PPP2R2AP63151 447 aa18.73■□□□□ 0.59
SYNPO-201ENST00000307662 CACNB1Q02641 598 aaPredicted RBP18.73■□□□□ 0.59
SYNPO-201ENST00000307662 SPARCL1Q14515 664 aa18.73■□□□□ 0.59
SYNPO-201ENST00000307662 GNPTABQ3T906 1256 aa18.73■□□□□ 0.59
SYNPO-201ENST00000307662 MFSD14BQ5SR56 506 aa18.73■□□□□ 0.59
SYNPO-201ENST00000307662 TBCKQ8TEA7 893 aa18.73■□□□□ 0.59
SYNPO-201ENST00000307662 MRPL47Q9HD33 250 aaKnown RBP18.73■□□□□ 0.59
SYNPO-201ENST00000307662 PCDHA1Q9Y5I3 950 aa18.73■□□□□ 0.59
SYNPO-201ENST00000307662 ARL6IP4Q66PJ3 421 aaKnown RBP18.73■□□□□ 0.59
SYNPO-201ENST00000307662 MMS19Q96T76 1030 aa18.73■□□□□ 0.59
SYNPO-201ENST00000307662 STOML1Q9UBI4 398 aa18.73■□□□□ 0.59
SYNPO-201ENST00000307662 ADAMTS1Q9UHI8 967 aa18.73■□□□□ 0.59
SYNPO-201ENST00000307662 USP14P54578 494 aa18.73■□□□□ 0.59
SYNPO-201ENST00000307662 TOB2Q14106 344 aaPredicted RBP18.73■□□□□ 0.59
SYNPO-201ENST00000307662 GRAMD1BQ3KR37 738 aa18.73■□□□□ 0.59
SYNPO-201ENST00000307662 FMR1NBQ8N0W7 255 aaPredicted RBP18.73■□□□□ 0.59
SYNPO-201ENST00000307662 CCDC138Q96M89 665 aa18.73■□□□□ 0.59
SYNPO-201ENST00000307662 AIFM3Q96NN9 605 aa18.73■□□□□ 0.59
SYNPO-201ENST00000307662 EPC1Q9H2F5 836 aa18.73■□□□□ 0.59
SYNPO-201ENST00000307662 LGALS16A8MUM7 142 aa18.72■□□□□ 0.59
SYNPO-201ENST00000307662 CLIC2O15247 247 aa18.72■□□□□ 0.59
SYNPO-201ENST00000307662 INPP1P49441 399 aa18.72■□□□□ 0.59
SYNPO-201ENST00000307662 SRLQ86TD4 932 aa18.72■□□□□ 0.59
SYNPO-201ENST00000307662 DHX40Q8IX18 779 aaKnown RBP18.72■□□□□ 0.59
SYNPO-201ENST00000307662 CCDC24Q8N4L8 307 aa18.72■□□□□ 0.59
SYNPO-201ENST00000307662 TRAIPQ9BWF2 469 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms