RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 FKBP1CQ5VVH2 108 aa12□□□□□ -0.49
LSM3-201ENST00000306024 CCDC174Q6PII3 467 aa12□□□□□ -0.49
LSM3-201ENST00000306024 SH2D3CQ8N5H7 860 aa12□□□□□ -0.49
LSM3-201ENST00000306024 EGFRP00533 1210 aa12□□□□□ -0.49
LSM3-201ENST00000306024 YBX3P16989 372 aaKnown RBP eCLIP12□□□□□ -0.49
LSM3-201ENST00000306024 GUCY1A2P33402 732 aa12□□□□□ -0.49
LSM3-201ENST00000306024 PLS1Q14651 629 aa12□□□□□ -0.49
LSM3-201ENST00000306024 FBXL16Q8N461 479 aa12□□□□□ -0.49
LSM3-201ENST00000306024 SH3GL3Q99963 347 aa12□□□□□ -0.49
LSM3-201ENST00000306024 TCP11L1Q9NUJ3 509 aa12□□□□□ -0.49
LSM3-201ENST00000306024 SERTAD1Q9UHV2 236 aa12□□□□□ -0.49
LSM3-201ENST00000306024 LUC7L2Q9Y383 392 aaKnown RBP12□□□□□ -0.49
LSM3-201ENST00000306024 SMCO2A6NFE2 343 aa12□□□□□ -0.49
LSM3-201ENST00000306024 EPHX2P34913 555 aa12□□□□□ -0.49
LSM3-201ENST00000306024 MRPL12P52815 198 aaKnown RBP12□□□□□ -0.49
LSM3-201ENST00000306024 UBXN1Q04323 297 aa12□□□□□ -0.49
LSM3-201ENST00000306024 SPP2Q13103 211 aa12□□□□□ -0.49
LSM3-201ENST00000306024 C8orf74Q6P047 294 aa12□□□□□ -0.49
LSM3-201ENST00000306024 MSL3Q8N5Y2 521 aaKnown RBP12□□□□□ -0.49
LSM3-201ENST00000306024 CCDC51Q96ER9 411 aa12□□□□□ -0.49
LSM3-201ENST00000306024 SLC40A1Q9NP59 571 aa12□□□□□ -0.49
LSM3-201ENST00000306024 EPN1Q9Y6I3 576 aaPredicted RBP12□□□□□ -0.49
LSM3-201ENST00000306024 MFAP3LO75121 409 aa11.99□□□□□ -0.49
LSM3-201ENST00000306024 WDR93Q6P2C0 686 aa11.99□□□□□ -0.49
LSM3-201ENST00000306024 ENOX1Q8TC92 643 aaKnown RBP11.99□□□□□ -0.49
LSM3-201ENST00000306024 SGSM3Q96HU1 749 aa11.99□□□□□ -0.49
LSM3-201ENST00000306024 MMS19Q96T76 1030 aa11.99□□□□□ -0.49
LSM3-201ENST00000306024 TAB2Q9NYJ8 693 aa11.99□□□□□ -0.49
LSM3-201ENST00000306024 TCEAL9Q9UHQ7 104 aa11.99□□□□□ -0.49
LSM3-201ENST00000306024 MAN1B1Q9UKM7 699 aa11.99□□□□□ -0.49
LSM3-201ENST00000306024 ZHX2Q9Y6X8 837 aa11.99□□□□□ -0.49
LSM3-201ENST00000306024 ASTN2O75129 1339 aaPredicted RBP11.99□□□□□ -0.49
LSM3-201ENST00000306024 MYO5AQ9Y4I1 1855 aaKnown RBP11.99□□□□□ -0.49
LSM3-201ENST00000306024 BAZ2AQ9UIF9 1905 aaKnown RBP11.99□□□□□ -0.49
LSM3-201ENST00000306024 MYH7P12883 1935 aa11.99□□□□□ -0.49
LSM3-201ENST00000306024 A0A0U1RQJ8 604 aa11.99□□□□□ -0.49
LSM3-201ENST00000306024 CLTAP09496 248 aa11.99□□□□□ -0.49
LSM3-201ENST00000306024 GRM1Q13255 1194 aa11.99□□□□□ -0.49
LSM3-201ENST00000306024 NYAP2Q9P242 653 aa11.99□□□□□ -0.49
LSM3-201ENST00000306024 TUBGCP6Q96RT7 1819 aa11.99□□□□□ -0.49
LSM3-201ENST00000306024 TACC1O75410 805 aa11.99□□□□□ -0.49
LSM3-201ENST00000306024 FLOT1O75955 427 aa11.99□□□□□ -0.49
LSM3-201ENST00000306024 FDPSP14324 419 aaKnown RBP11.99□□□□□ -0.49
LSM3-201ENST00000306024 IREB2P48200 963 aaKnown RBP11.99□□□□□ -0.49
LSM3-201ENST00000306024 GUCY1A3Q02108 690 aa11.99□□□□□ -0.49
LSM3-201ENST00000306024 NR5A1Q13285 461 aa11.99□□□□□ -0.49
LSM3-201ENST00000306024 RILPL1Q5EBL4 403 aa11.99□□□□□ -0.49
LSM3-201ENST00000306024 TTBK2Q6IQ55 1244 aa11.99□□□□□ -0.49
LSM3-201ENST00000306024 GRAMD1CQ8IYS0 662 aa11.99□□□□□ -0.49
LSM3-201ENST00000306024 COA7Q96BR5 231 aa11.99□□□□□ -0.49
LSM3-201ENST00000306024 HAUS4Q9H6D7 363 aa11.99□□□□□ -0.49
LSM3-201ENST00000306024 UBE2Q2LH0YL09 131 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 NPM3O75607 178 aaKnown RBP11.98□□□□□ -0.49
LSM3-201ENST00000306024 FGRP09769 529 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 PDHBP11177 359 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 GUCY2FP51841 1108 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 SNAP25P60880 206 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 SLC7A5Q01650 507 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 ZNF174Q15697 407 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 RRAGBQ5VZM2 374 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 RCSD1Q6JBY9 416 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 HIBCHQ6NVY1 386 aaPredicted RBP11.98□□□□□ -0.49
LSM3-201ENST00000306024 NOSTRINQ8IVI9 506 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 ACTR5Q9H9F9 607 aaPredicted RBP11.98□□□□□ -0.49
LSM3-201ENST00000306024 PCDHA1Q9Y5I3 950 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 RGPD3A6NKT7 1758 aaPredicted RBP11.98□□□□□ -0.49
LSM3-201ENST00000306024 RGPD4Q7Z3J3 1758 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 NDUFB10O96000 172 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 TRIM21P19474 475 aaKnown RBP11.98□□□□□ -0.49
LSM3-201ENST00000306024 MCM7P33993 719 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 AARSP49588 968 aaKnown RBP eCLIP11.98□□□□□ -0.49
LSM3-201ENST00000306024 ADCY7P51828 1080 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 KIF23Q02241 960 aaPredicted RBP11.98□□□□□ -0.49
LSM3-201ENST00000306024 MYO1EQ12965 1108 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 PREPLQ4J6C6 727 aaPredicted RBP11.98□□□□□ -0.49
LSM3-201ENST00000306024 FAM83BQ5T0W9 1011 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 FAM43BQ6ZT52 329 aaPredicted RBP11.98□□□□□ -0.49
LSM3-201ENST00000306024 SH3BP5LQ7L8J4 393 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 CCDC13Q8IYE1 715 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 CACNA2D3Q8IZS8 1091 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 BLIDQ8IZY5 108 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 TCP11Q8WWU5 503 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 THOC1Q96FV9 657 aaKnown RBP11.98□□□□□ -0.49
LSM3-201ENST00000306024 CCDC43Q96MW1 224 aaKnown RBP11.98□□□□□ -0.49
LSM3-201ENST00000306024 YIPF3Q9GZM5 350 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 CCDC88AQ3V6T2 1871 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 STK36Q9NRP7 1315 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 SPDYE3A6NKU9 549 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 CAP2P40123 477 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 GABPAQ06546 454 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 SPAG1Q07617 926 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 CDAN1Q8IWY9 1227 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 REXO1Q8N1G1 1221 aaKnown RBP11.98□□□□□ -0.49
LSM3-201ENST00000306024 RASGRP4Q8TDF6 673 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 ACER1Q8TDN7 264 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 KIF9Q9HAQ2 790 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 HOMER2Q9NSB8 354 aa11.98□□□□□ -0.49
LSM3-201ENST00000306024 FOXN1O15353 648 aa11.97□□□□□ -0.49
LSM3-201ENST00000306024 COBLO75128 1261 aa11.97□□□□□ -0.49
LSM3-201ENST00000306024 NR1D1P20393 614 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms