RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 FAM186BQ8IYM0 893 aa8.48□□□□□ -1.05
SCN9A-201ENST00000303354 COA1Q9GZY4 146 aa8.48□□□□□ -1.05
SCN9A-201ENST00000303354 HOXD10P28358 340 aa8.48□□□□□ -1.05
SCN9A-201ENST00000303354 SRGAP1Q7Z6B7 1085 aa8.48□□□□□ -1.05
SCN9A-201ENST00000303354 TTC25Q96NG3 672 aa8.48□□□□□ -1.05
SCN9A-201ENST00000303354 PNMA3Q9UL41 463 aa8.48□□□□□ -1.05
SCN9A-201ENST00000303354 KRT1P04264 644 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 MFAP3P55082 362 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 ASPRV1Q53RT3 343 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 KRBA2Q6ZNG9 492 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 VSIG1Q86XK7 387 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 NT5C1BQ96P26 610 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 SUGT1Q9Y2Z0 365 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 KIF21AQ7Z4S6 1674 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 PI4K2BG5E9Z4 385 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 XPOTO43592 962 aaKnown RBP8.47□□□□□ -1.05
SCN9A-201ENST00000303354 NBPF11Q86T75 865 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 ABCC2Q92887 1545 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 ZNF75DP51815 510 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 HUNKP57058 714 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 EHHADHQ08426 723 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 I3L4J1 428 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 PPP6R3Q5H9R7 873 aaPredicted RBP8.47□□□□□ -1.05
SCN9A-201ENST00000303354 THEM5Q8N1Q8 247 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 AFAP1L2Q8N4X5 818 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 LARP4BQ92615 738 aaKnown RBP8.47□□□□□ -1.05
SCN9A-201ENST00000303354 SIK2Q9H0K1 926 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.47□□□□□ -1.05
SCN9A-201ENST00000303354 SRGAP2O75044 1071 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 DDAH1O94760 285 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 SRGAP2BP0DMP2 458 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 LCP1P13796 627 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 PCDHB6Q9Y5E3 794 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 CCDC78A2IDD5 438 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 PSMC2P35998 433 aaKnown RBP8.47□□□□□ -1.05
SCN9A-201ENST00000303354 NPHP3-ACAD11A0A0J9YXS1 232 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 FTCDO95954 541 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 CYP21A2P08686 494 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 C6orf222P0C671 652 aaPredicted RBP8.47□□□□□ -1.05
SCN9A-201ENST00000303354 THOC5Q13769 683 aaKnown RBP8.47□□□□□ -1.05
SCN9A-201ENST00000303354 MUM1L1Q5H9M0 696 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 TTLL11Q8NHH1 800 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 GABPB2Q8TAK5 448 aaPredicted RBP8.47□□□□□ -1.05
SCN9A-201ENST00000303354 PCDHA7Q9UN72 937 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 UGGT1Q9NYU2 1555 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 GOLGA8MH3BSY2 632 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 MOCS3O95396 460 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 PLA2G4BP0C869 781 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 MCAMP43121 646 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 PDE1CQ14123 709 aaPredicted RBP8.47□□□□□ -1.05
SCN9A-201ENST00000303354 MMEL1Q495T6 779 aa8.47□□□□□ -1.05
SCN9A-201ENST00000303354 DDX41Q9UJV9 622 aaKnown RBP8.47□□□□□ -1.05
SCN9A-201ENST00000303354 PARD3Q8TEW0 1356 aa8.46□□□□□ -1.05
SCN9A-201ENST00000303354 FCER1AP12319 257 aa8.46□□□□□ -1.05
SCN9A-201ENST00000303354 NFIXQ14938 502 aa8.46□□□□□ -1.05
SCN9A-201ENST00000303354 PPP2R5BQ15173 497 aa8.46□□□□□ -1.05
SCN9A-201ENST00000303354 PPP2R5EQ16537 467 aa8.46□□□□□ -1.05
SCN9A-201ENST00000303354 PRR36Q9H6K5 1346 aa8.46□□□□□ -1.05
SCN9A-201ENST00000303354 ESRRBO95718 433 aa8.46□□□□□ -1.05
SCN9A-201ENST00000303354 DPEP1P16444 411 aa8.46□□□□□ -1.05
SCN9A-201ENST00000303354 ZNF568Q3ZCX4 644 aa8.46□□□□□ -1.05
SCN9A-201ENST00000303354 IFT20Q8IY31 132 aa8.46□□□□□ -1.05
SCN9A-201ENST00000303354 CACTINQ8WUQ7 758 aaKnown RBP8.46□□□□□ -1.05
SCN9A-201ENST00000303354 CCDC17Q96LX7 622 aa8.46□□□□□ -1.05
SCN9A-201ENST00000303354 RNF146Q9NTX7 359 aa8.46□□□□□ -1.05
SCN9A-201ENST00000303354 GABBR1Q9UBS5 961 aa8.46□□□□□ -1.05
SCN9A-201ENST00000303354 ADGRL3Q9HAR2 1447 aa8.46□□□□□ -1.05
SCN9A-201ENST00000303354 URGCPQ8TCY9 931 aa8.46□□□□□ -1.05
SCN9A-201ENST00000303354 ACBD5Q5T8D3 534 aaPredicted RBP8.46□□□□□ -1.06
SCN9A-201ENST00000303354 SPON2Q9BUD6 331 aa8.46□□□□□ -1.06
SCN9A-201ENST00000303354 NGRNQ9NPE2 291 aaKnown RBP8.46□□□□□ -1.06
SCN9A-201ENST00000303354 KIAA0556O60303 1618 aa8.46□□□□□ -1.06
SCN9A-201ENST00000303354 CYP4F22Q6NT55 531 aa8.46□□□□□ -1.06
SCN9A-201ENST00000303354 IFNLR1Q8IU57 520 aaPredicted RBP8.46□□□□□ -1.06
SCN9A-201ENST00000303354 BHMT2Q9H2M3 363 aa8.46□□□□□ -1.06
SCN9A-201ENST00000303354 POTEMA6NI47 508 aa8.46□□□□□ -1.06
SCN9A-201ENST00000303354 CYP27B1O15528 508 aa8.46□□□□□ -1.06
SCN9A-201ENST00000303354 PER1O15534 1290 aaPredicted RBP8.46□□□□□ -1.06
SCN9A-201ENST00000303354 LARGE1O95461 756 aa8.46□□□□□ -1.06
SCN9A-201ENST00000303354 ASMTLO95671 621 aa8.46□□□□□ -1.06
SCN9A-201ENST00000303354 SERPIND1P05546 499 aa8.46□□□□□ -1.06
SCN9A-201ENST00000303354 PPP1R2P41236 205 aa8.46□□□□□ -1.06
SCN9A-201ENST00000303354 PTPN12Q05209 780 aaKnown RBP8.46□□□□□ -1.06
SCN9A-201ENST00000303354 RASEFQ8IZ41 740 aa8.46□□□□□ -1.06
SCN9A-201ENST00000303354 KRT222Q8N1A0 295 aa8.46□□□□□ -1.06
SCN9A-201ENST00000303354 SAAL1Q96ER3 474 aa8.46□□□□□ -1.06
SCN9A-201ENST00000303354 HACL1Q9UJ83 578 aa8.46□□□□□ -1.06
SCN9A-201ENST00000303354 SLC8A2Q9UPR5 921 aa8.46□□□□□ -1.06
SCN9A-201ENST00000303354 SESN3P58005 492 aa8.46□□□□□ -1.06
SCN9A-201ENST00000303354 PDE1BQ01064 536 aa8.46□□□□□ -1.06
SCN9A-201ENST00000303354 EPHA10Q5JZY3 1008 aa8.46□□□□□ -1.06
SCN9A-201ENST00000303354 KCTD17Q8N5Z5 321 aa8.46□□□□□ -1.06
SCN9A-201ENST00000303354 MCUR1Q96AQ8 359 aa8.46□□□□□ -1.06
SCN9A-201ENST00000303354 HOXC10Q9NYD6 342 aa8.46□□□□□ -1.06
SCN9A-201ENST00000303354 GGA3Q9NZ52 723 aa8.46□□□□□ -1.06
SCN9A-201ENST00000303354 HEG1Q9ULI3 1381 aa8.46□□□□□ -1.06
SCN9A-201ENST00000303354 E9PMD0 336 aa8.45□□□□□ -1.06
SCN9A-201ENST00000303354 ATF2P15336 505 aa8.45□□□□□ -1.06
SCN9A-201ENST00000303354 TMCO5AQ8N6Q1 288 aa8.45□□□□□ -1.06
SCN9A-201ENST00000303354 ATP7AQ04656 1500 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms