RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 A0A087WWV3 80 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 H7C1W4 665 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 IL6STP40189 918 aaPredicted RBP10.67□□□□□ -0.7
COL6A3-201ENST00000295550 GYG1P46976 350 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 GOLGA8FQ08AF8 430 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 GOLGA8DPQ0D2H9 430 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 BIRC2Q13490 618 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 MON2Q7Z3U7 1717 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 SERPINI2O75830 405 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 HSPA8P11142 646 aaKnown RBP10.67□□□□□ -0.7
COL6A3-201ENST00000295550 LMNB1P20700 586 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 EHHADHQ08426 723 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 RAB44Q7Z6P3 723 aaPredicted RBP10.67□□□□□ -0.7
COL6A3-201ENST00000295550 SATB2Q9UPW6 733 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 TNNI1P19237 187 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 FLOT2Q14254 428 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 GRAMD1BQ3KR37 738 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 MAEAQ7L5Y9 396 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 MB21D2Q8IYB1 491 aaPredicted RBP10.67□□□□□ -0.7
COL6A3-201ENST00000295550 SLC35F6Q8N357 371 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 DDX25Q9UHL0 483 aaKnown RBP10.67□□□□□ -0.7
COL6A3-201ENST00000295550 ARL6IP4Q66PJ3 421 aaKnown RBP10.67□□□□□ -0.7
COL6A3-201ENST00000295550 ZNF609O15014 1411 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 NEK2P51955 445 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 TMED2Q15363 201 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 ICE2Q659A1 982 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 PAGE5Q96GU1 130 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 TFCP2L1Q9NZI6 479 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 RPS8P62241 208 aaKnown RBP10.67□□□□□ -0.7
COL6A3-201ENST00000295550 E9PMD0 336 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 H3BRJ5 948 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 N4BP1O75113 896 aaKnown RBP10.67□□□□□ -0.7
COL6A3-201ENST00000295550 MCAMP43121 646 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 PDE6CP51160 858 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 EIF6P56537 245 aaKnown RBP10.67□□□□□ -0.7
COL6A3-201ENST00000295550 TRIM59Q8IWR1 403 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 NEDD4P46934 1319 aa10.67□□□□□ -0.7
COL6A3-201ENST00000295550 NVLO15381 856 aaKnown RBP10.66□□□□□ -0.7
COL6A3-201ENST00000295550 PRPF6O94906 941 aaKnown RBP10.66□□□□□ -0.7
COL6A3-201ENST00000295550 PDHA1P08559 390 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 TMED8Q6PL24 325 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-201ENST00000295550 LCORLQ8N3X6 602 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 C8orf37Q96NL8 207 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 NOP53Q9NZM5 478 aaKnown RBP10.66□□□□□ -0.7
COL6A3-201ENST00000295550 CD163L1Q9NR16 1453 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 TOGARAM2Q6ZUX3 1019 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 KCNJ6P48051 423 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 STX1BP61266 288 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 EPHA10Q5JZY3 1008 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 CDKL2Q92772 493 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 TRAIPQ9BWF2 469 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 SLC24A3Q9HC58 644 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 ST7Q9NRC1 585 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 SLAIN2Q9P270 581 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 CDHR2Q9BYE9 1310 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 NELFCDQ8IXH7 590 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 GRAMD1CQ8IYS0 662 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 PANK4Q9NVE7 773 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 CEP170BQ9Y4F5 1589 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-201ENST00000295550 ATP1A3P13637 1013 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 SKOR1P84550 965 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 ITKQ08881 620 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 FGD4Q96M96 766 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 MTA3Q9BTC8 594 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-201ENST00000295550 TRPC6Q9Y210 931 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 POC1B-GALNT4F8VUJ3 575 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 TADA3O75528 432 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 TECP42680 631 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 CRKLP46109 303 aaKnown RBP10.66□□□□□ -0.7
COL6A3-201ENST00000295550 TRIM60Q495X7 471 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 UHMK1Q8TAS1 419 aaKnown RBP10.66□□□□□ -0.7
COL6A3-201ENST00000295550 CCDC159P0C7I6 412 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 SERPINI1Q99574 410 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 C1orf112Q9NSG2 853 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 AFDNP55196 1824 aaKnown RBP10.66□□□□□ -0.7
COL6A3-201ENST00000295550 EIF3CLB5ME19 914 aaKnown RBP10.66□□□□□ -0.7
COL6A3-201ENST00000295550 GFAPP14136 432 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 TMEM259Q4ZIN3 620 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 PDZD4Q76G19 769 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-201ENST00000295550 EIF3CQ99613 913 aaKnown RBP10.66□□□□□ -0.7
COL6A3-201ENST00000295550 TRIM15Q9C019 465 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 URB1O60287 2271 aaKnown RBP10.66□□□□□ -0.7
COL6A3-201ENST00000295550 CHMP6Q96FZ7 201 aa10.66□□□□□ -0.7
COL6A3-201ENST00000295550 PAWRQ96IZ0 340 aaKnown RBP10.66□□□□□ -0.7
COL6A3-201ENST00000295550 DDX39AO00148 427 aaKnown RBP10.65□□□□□ -0.7
COL6A3-201ENST00000295550 TTBK2Q6IQ55 1244 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 HINFPQ9BQA5 517 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 PI16Q6UXB8 463 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 NLRP10Q86W26 655 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 ACRBPQ8NEB7 543 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 LARP4BQ92615 738 aaKnown RBP10.65□□□□□ -0.7
COL6A3-201ENST00000295550 P2RX5Q93086 422 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 TMOD4Q9NZQ9 345 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 ARMCX3Q9UH62 379 aaPredicted RBP10.65□□□□□ -0.7
COL6A3-201ENST00000295550 RICTORQ6R327 1708 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 CPDO75976 1380 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 KLRF2D3W0D1 207 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 ZMYND10O75800 440 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 LMNAP02545 664 aaKnown RBP10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms