RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 APPP05067 770 aa11.47□□□□□ -0.57
UPF3B-201ENST00000276201 MYL1P05976 194 aa11.47□□□□□ -0.57
UPF3B-201ENST00000276201 TDO2P48775 406 aa11.47□□□□□ -0.57
UPF3B-201ENST00000276201 NNTQ13423 1086 aa11.47□□□□□ -0.57
UPF3B-201ENST00000276201 NCAPH2Q6IBW4 605 aa11.47□□□□□ -0.57
UPF3B-201ENST00000276201 MFSD6Q6ZSS7 791 aa11.47□□□□□ -0.57
UPF3B-201ENST00000276201 PRRT2Q7Z6L0 340 aaPredicted RBP11.47□□□□□ -0.57
UPF3B-201ENST00000276201 FANCBQ8NB91 859 aa11.47□□□□□ -0.57
UPF3B-201ENST00000276201 NUP88Q99567 741 aaPredicted RBP11.47□□□□□ -0.57
UPF3B-201ENST00000276201 SLF1Q9BQI6 1058 aa11.47□□□□□ -0.57
UPF3B-201ENST00000276201 GINM1Q9NU53 330 aa11.47□□□□□ -0.57
UPF3B-201ENST00000276201 SWAP70Q9UH65 585 aa11.47□□□□□ -0.57
UPF3B-201ENST00000276201 ANAPC4Q9UJX5 808 aa11.47□□□□□ -0.57
UPF3B-201ENST00000276201 ROBO3Q96MS0 1386 aa11.46□□□□□ -0.57
UPF3B-201ENST00000276201 KRT86O43790 486 aa11.46□□□□□ -0.57
UPF3B-201ENST00000276201 ZEB2O60315 1214 aa11.46□□□□□ -0.57
UPF3B-201ENST00000276201 USP8P40818 1118 aa11.46□□□□□ -0.57
UPF3B-201ENST00000276201 HERVK_113P62684 666 aa11.46□□□□□ -0.57
UPF3B-201ENST00000276201 SPP2Q13103 211 aa11.46□□□□□ -0.57
UPF3B-201ENST00000276201 NR5A1Q13285 461 aa11.46□□□□□ -0.57
UPF3B-201ENST00000276201 ABCB5Q2M3G0 1257 aa11.46□□□□□ -0.57
UPF3B-201ENST00000276201 FIGNQ5HY92 759 aa11.46□□□□□ -0.57
UPF3B-201ENST00000276201 ALS2CLQ60I27 953 aa11.46□□□□□ -0.57
UPF3B-201ENST00000276201 CCDC70Q6NSX1 233 aa11.46□□□□□ -0.57
UPF3B-201ENST00000276201 C16orf86Q6ZW13 317 aa11.46□□□□□ -0.57
UPF3B-201ENST00000276201 MB21D1Q8N884 522 aa11.46□□□□□ -0.57
UPF3B-201ENST00000276201 ZNF280CQ8ND82 737 aa11.46□□□□□ -0.57
UPF3B-201ENST00000276201 C1orf131Q8NDD1 294 aaKnown RBP11.46□□□□□ -0.57
UPF3B-201ENST00000276201 MMS19Q96T76 1030 aa11.46□□□□□ -0.57
UPF3B-201ENST00000276201 CRACR2AQ9BSW2 395 aa11.46□□□□□ -0.57
UPF3B-201ENST00000276201 TSGA10Q9BZW7 698 aa11.46□□□□□ -0.57
UPF3B-201ENST00000276201 NAPBQ9H115 298 aa11.46□□□□□ -0.57
UPF3B-201ENST00000276201 CABP5Q9NP86 173 aa11.46□□□□□ -0.57
UPF3B-201ENST00000276201 TAOK2Q9UL54 1235 aa11.46□□□□□ -0.57
UPF3B-201ENST00000276201 ERICH2A1L162 156 aa11.46□□□□□ -0.58
UPF3B-201ENST00000276201 RNF225M0QZC1 329 aaPredicted RBP11.46□□□□□ -0.58
UPF3B-201ENST00000276201 OPA1O60313 960 aa11.46□□□□□ -0.58
UPF3B-201ENST00000276201 ABL1P00519 1130 aa11.46□□□□□ -0.58
UPF3B-201ENST00000276201 CYLC1P35663 651 aaPredicted RBP11.46□□□□□ -0.58
UPF3B-201ENST00000276201 CDK8P49336 464 aa11.46□□□□□ -0.58
UPF3B-201ENST00000276201 IRAK1P51617 712 aa11.46□□□□□ -0.58
UPF3B-201ENST00000276201 STX17P56962 302 aa11.46□□□□□ -0.58
UPF3B-201ENST00000276201 FUT2Q10981 343 aa11.46□□□□□ -0.58
UPF3B-201ENST00000276201 KCNB1Q14721 858 aa11.46□□□□□ -0.58
UPF3B-201ENST00000276201 COL13A1Q5TAT6 717 aaPredicted RBP11.46□□□□□ -0.58
UPF3B-201ENST00000276201 GPAT2Q6NUI2 795 aa11.46□□□□□ -0.58
UPF3B-201ENST00000276201 ZNF654Q8IZM8 581 aa11.46□□□□□ -0.58
UPF3B-201ENST00000276201 OXER1Q8TDS5 423 aa11.46□□□□□ -0.58
UPF3B-201ENST00000276201 MYCBPQ99417 103 aaPredicted RBP11.46□□□□□ -0.58
UPF3B-201ENST00000276201 TACO1Q9BSH4 297 aaKnown RBP11.46□□□□□ -0.58
UPF3B-201ENST00000276201 MYL10Q9BUA6 226 aa11.46□□□□□ -0.58
UPF3B-201ENST00000276201 WDR18Q9BV38 432 aa11.46□□□□□ -0.58
UPF3B-201ENST00000276201 SELENOOQ9BVL4 669 aa11.46□□□□□ -0.58
UPF3B-201ENST00000276201 A1CFQ9NQ94 594 aaKnown RBP11.46□□□□□ -0.58
UPF3B-201ENST00000276201 RBM28Q9NW13 759 aaKnown RBP11.46□□□□□ -0.58
UPF3B-201ENST00000276201 TACC3Q9Y6A5 838 aa11.46□□□□□ -0.58
UPF3B-201ENST00000276201 LOC285556D6RIA3 1793 aa11.45□□□□□ -0.58
UPF3B-201ENST00000276201 MINDY4BA8MYZ0 360 aa11.45□□□□□ -0.58
UPF3B-201ENST00000276201 GSCP56915 257 aaPredicted RBP11.45□□□□□ -0.58
UPF3B-201ENST00000276201 CRHR2Q13324 411 aa11.45□□□□□ -0.58
UPF3B-201ENST00000276201 SEC23AQ15436 765 aa11.45□□□□□ -0.58
UPF3B-201ENST00000276201 ARL6IP4Q66PJ3 421 aaKnown RBP11.45□□□□□ -0.58
UPF3B-201ENST00000276201 KLHL10Q6JEL2 608 aa11.45□□□□□ -0.58
UPF3B-201ENST00000276201 ANKRD23Q86SG2 305 aa11.45□□□□□ -0.58
UPF3B-201ENST00000276201 EPSTI1Q96J88 318 aa11.45□□□□□ -0.58
UPF3B-201ENST00000276201 NACAP1Q9BZK3 213 aa11.45□□□□□ -0.58
UPF3B-201ENST00000276201 TTYH3Q9C0H2 523 aa11.45□□□□□ -0.58
UPF3B-201ENST00000276201 LUC7L2Q9Y383 392 aaKnown RBP11.45□□□□□ -0.58
UPF3B-201ENST00000276201 CASP8AP2Q9UKL3 1982 aa11.45□□□□□ -0.58
UPF3B-201ENST00000276201 A0A1W2PQJ5 194 aa11.45□□□□□ -0.58
UPF3B-201ENST00000276201 EBAG9O00559 213 aa11.45□□□□□ -0.58
UPF3B-201ENST00000276201 EIF3HO15372 352 aaKnown RBP eCLIP11.45□□□□□ -0.58
UPF3B-201ENST00000276201 ATP1A1P05023 1023 aaKnown RBP11.45□□□□□ -0.58
UPF3B-201ENST00000276201 GGCXP38435 758 aa11.45□□□□□ -0.58
UPF3B-201ENST00000276201 AFMP43652 599 aa11.45□□□□□ -0.58
UPF3B-201ENST00000276201 DNM2P50570 870 aa11.45□□□□□ -0.58
UPF3B-201ENST00000276201 AKAP17AQ02040 695 aaKnown RBP11.45□□□□□ -0.58
UPF3B-201ENST00000276201 APBA1Q02410 837 aa11.45□□□□□ -0.58
UPF3B-201ENST00000276201 PKN1Q16512 942 aa11.45□□□□□ -0.58
UPF3B-201ENST00000276201 TSR1Q2NL82 804 aaKnown RBP11.45□□□□□ -0.58
UPF3B-201ENST00000276201 RRAGBQ5VZM2 374 aa11.45□□□□□ -0.58
UPF3B-201ENST00000276201 GADL1Q6ZQY3 521 aa11.45□□□□□ -0.58
UPF3B-201ENST00000276201 NELFBQ8WX92 580 aa11.45□□□□□ -0.58
UPF3B-201ENST00000276201 CAVIN3Q969G5 261 aa11.45□□□□□ -0.58
UPF3B-201ENST00000276201 AS3MTQ9HBK9 375 aa11.45□□□□□ -0.58
UPF3B-201ENST00000276201 GGA2Q9UJY4 613 aa11.45□□□□□ -0.58
UPF3B-201ENST00000276201 GOLGA6CA6NDK9 693 aa11.44□□□□□ -0.58
UPF3B-201ENST00000276201 GOLGA6DP0CG33 693 aa11.44□□□□□ -0.58
UPF3B-201ENST00000276201 CALM1P0DP23 149 aa11.44□□□□□ -0.58
UPF3B-201ENST00000276201 CALM2P0DP24 149 aa11.44□□□□□ -0.58
UPF3B-201ENST00000276201 CALM3P0DP25 149 aa11.44□□□□□ -0.58
UPF3B-201ENST00000276201 PCP11498 1178 aaKnown RBP11.44□□□□□ -0.58
UPF3B-201ENST00000276201 AKR1B1P15121 316 aa11.44□□□□□ -0.58
UPF3B-201ENST00000276201 HMGCS2P54868 508 aa11.44□□□□□ -0.58
UPF3B-201ENST00000276201 DGKZQ13574 1117 aa11.44□□□□□ -0.58
UPF3B-201ENST00000276201 SEPT2Q15019 361 aa11.44□□□□□ -0.58
UPF3B-201ENST00000276201 TAF1CQ15572 869 aaPredicted RBP11.44□□□□□ -0.58
UPF3B-201ENST00000276201 EMBQ6PCB8 327 aa11.44□□□□□ -0.58
UPF3B-201ENST00000276201 WDR59Q6PJI9 974 aa11.44□□□□□ -0.58
UPF3B-201ENST00000276201 FASTKD5Q7L8L6 764 aaKnown RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms