RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 CCDC88AQ3V6T2 1871 aa18.39■□□□□ 0.53
VPS54-201ENST00000272322 BRD3Q15059 726 aa18.39■□□□□ 0.53
VPS54-201ENST00000272322 TTC19Q6DKK2 380 aaPredicted RBP18.39■□□□□ 0.53
VPS54-201ENST00000272322 DNAJC19Q96DA6 116 aa18.39■□□□□ 0.53
VPS54-201ENST00000272322 CRAMP1Q96RY5 1269 aa18.39■□□□□ 0.53
VPS54-201ENST00000272322 BHMT2Q9H2M3 363 aa18.39■□□□□ 0.53
VPS54-201ENST00000272322 PODXL2Q9NZ53 605 aa18.39■□□□□ 0.53
VPS54-201ENST00000272322 BTAF1O14981 1849 aa18.39■□□□□ 0.53
VPS54-201ENST00000272322 SPDYE3A6NKU9 549 aa18.39■□□□□ 0.53
VPS54-201ENST00000272322 USO1O60763 962 aaKnown RBP18.39■□□□□ 0.53
VPS54-201ENST00000272322 VEZTQ9HBM0 779 aa18.39■□□□□ 0.53
VPS54-201ENST00000272322 EMILIN3Q9NT22 766 aa18.39■□□□□ 0.53
VPS54-201ENST00000272322 L1RE1Q9UN81 338 aa18.39■□□□□ 0.53
VPS54-201ENST00000272322 TMCO5BA8MYB1 307 aa18.38■□□□□ 0.53
VPS54-201ENST00000272322 RAD17O75943 681 aa18.38■□□□□ 0.53
VPS54-201ENST00000272322 MYL1P05976 194 aa18.38■□□□□ 0.53
VPS54-201ENST00000272322 FXR2P51116 673 aaKnown RBP eCLIP18.38■□□□□ 0.53
VPS54-201ENST00000272322 ARHGAP4P98171 946 aa18.38■□□□□ 0.53
VPS54-201ENST00000272322 KCNMA1Q12791 1236 aa18.38■□□□□ 0.53
VPS54-201ENST00000272322 TPH2Q8IWU9 490 aa18.38■□□□□ 0.53
VPS54-201ENST00000272322 NUP58Q9BVL2 599 aa18.38■□□□□ 0.53
VPS54-201ENST00000272322 DMGDHQ9UI17 866 aaKnown RBP18.38■□□□□ 0.53
VPS54-201ENST00000272322 ZBTB12Q9Y330 459 aaPredicted RBP18.38■□□□□ 0.53
VPS54-201ENST00000272322 NRAPQ86VF7 1730 aa18.38■□□□□ 0.53
VPS54-201ENST00000272322 FAM86B1E9PN63 330 aa18.38■□□□□ 0.53
VPS54-201ENST00000272322 FAM86B2P0C5J1 330 aa18.38■□□□□ 0.53
VPS54-201ENST00000272322 NR2F2P24468 414 aa18.38■□□□□ 0.53
VPS54-201ENST00000272322 GJB7Q6PEY0 223 aa18.38■□□□□ 0.53
VPS54-201ENST00000272322 LRRC55Q6ZSA7 311 aa18.38■□□□□ 0.53
VPS54-201ENST00000272322 CATSPER3Q86XQ3 398 aa18.38■□□□□ 0.53
VPS54-201ENST00000272322 GUF1Q8N442 669 aaKnown RBP18.38■□□□□ 0.53
VPS54-201ENST00000272322 PRMT6Q96LA8 375 aaPredicted RBP18.38■□□□□ 0.53
VPS54-201ENST00000272322 LRRC1Q9BTT6 524 aa18.38■□□□□ 0.53
VPS54-201ENST00000272322 FAM198AQ9UFP1 575 aa18.38■□□□□ 0.53
VPS54-201ENST00000272322 ZBTB21Q9ULJ3 1066 aa18.38■□□□□ 0.53
VPS54-201ENST00000272322 SIK3Q9Y2K2 1263 aa18.38■□□□□ 0.53
VPS54-201ENST00000272322 SLC9A1P19634 815 aa18.37■□□□□ 0.53
VPS54-201ENST00000272322 HOXA10P31260 410 aaPredicted RBP18.37■□□□□ 0.53
VPS54-201ENST00000272322 VAV2P52735 878 aa18.37■□□□□ 0.53
VPS54-201ENST00000272322 MTMR8Q96EF0 704 aa18.37■□□□□ 0.53
VPS54-201ENST00000272322 CSRNP1Q96S65 589 aa18.37■□□□□ 0.53
VPS54-201ENST00000272322 STK17AQ9UEE5 414 aa18.37■□□□□ 0.53
VPS54-201ENST00000272322 COL4A3BPQ9Y5P4 624 aa18.37■□□□□ 0.53
VPS54-201ENST00000272322 NDUFB10O96000 172 aa18.37■□□□□ 0.53
VPS54-201ENST00000272322 ADRA2BP18089 450 aa18.37■□□□□ 0.53
VPS54-201ENST00000272322 FKBP3Q00688 224 aaKnown RBP18.37■□□□□ 0.53
VPS54-201ENST00000272322 GPATCH4Q5T3I0 446 aaKnown RBP18.37■□□□□ 0.53
VPS54-201ENST00000272322 SFR1Q86XK3 245 aa18.37■□□□□ 0.53
VPS54-201ENST00000272322 ZKSCAN7Q9P0L1 754 aaPredicted RBP18.37■□□□□ 0.53
VPS54-201ENST00000272322 PLAGL2Q9UPG8 496 aa18.37■□□□□ 0.53
VPS54-201ENST00000272322 KIAA1551Q9HCM1 1747 aa18.37■□□□□ 0.53
VPS54-201ENST00000272322 ZSCAN5CA6NGD5 496 aaPredicted RBP18.37■□□□□ 0.53
VPS54-201ENST00000272322 TACC1O75410 805 aa18.37■□□□□ 0.53
VPS54-201ENST00000272322 CAPN2P17655 700 aa18.37■□□□□ 0.53
VPS54-201ENST00000272322 POLD1P28340 1107 aa18.37■□□□□ 0.53
VPS54-201ENST00000272322 RRP1BQ14684 758 aaKnown RBP18.37■□□□□ 0.53
VPS54-201ENST00000272322 ABCB5Q2M3G0 1257 aa18.37■□□□□ 0.53
VPS54-201ENST00000272322 FAM83BQ5T0W9 1011 aa18.37■□□□□ 0.53
VPS54-201ENST00000272322 ACER1Q8TDN7 264 aa18.37■□□□□ 0.53
VPS54-201ENST00000272322 EIF3CLB5ME19 914 aaKnown RBP18.36■□□□□ 0.53
VPS54-201ENST00000272322 ECE2O60344 883 aa18.36■□□□□ 0.53
VPS54-201ENST00000272322 MYBP10242 640 aa18.36■□□□□ 0.53
VPS54-201ENST00000272322 SCFD1Q8WVM8 642 aa18.36■□□□□ 0.53
VPS54-201ENST00000272322 ERGIC2Q96RQ1 377 aa18.36■□□□□ 0.53
VPS54-201ENST00000272322 EIF3CQ99613 913 aaKnown RBP18.36■□□□□ 0.53
VPS54-201ENST00000272322 PSMD14O00487 310 aa18.36■□□□□ 0.53
VPS54-201ENST00000272322 CYP11B2P19099 503 aa18.36■□□□□ 0.53
VPS54-201ENST00000272322 FECHP22830 423 aa18.36■□□□□ 0.53
VPS54-201ENST00000272322 NOP2P46087 812 aaKnown RBP18.36■□□□□ 0.53
VPS54-201ENST00000272322 MEA1Q16626 185 aa18.36■□□□□ 0.53
VPS54-201ENST00000272322 C15orf52Q6ZUT6 534 aaKnown RBP18.36■□□□□ 0.53
VPS54-201ENST00000272322 CCDC65Q8IXS2 484 aa18.36■□□□□ 0.53
VPS54-201ENST00000272322 COL5A3P25940 1745 aaPredicted RBP18.36■□□□□ 0.53
VPS54-201ENST00000272322 A0A1W2PRG0 241 aa18.36■□□□□ 0.53
VPS54-201ENST00000272322 GCNT3O95395 438 aa18.36■□□□□ 0.53
VPS54-201ENST00000272322 CASP4P49662 377 aa18.36■□□□□ 0.53
VPS54-201ENST00000272322 EHHADHQ08426 723 aa18.36■□□□□ 0.53
VPS54-201ENST00000272322 SIAH1Q8IUQ4 282 aa18.36■□□□□ 0.53
VPS54-201ENST00000272322 IFT81Q8WYA0 676 aa18.36■□□□□ 0.53
VPS54-201ENST00000272322 ESYT2A0FGR8 921 aa18.35■□□□□ 0.53
VPS54-201ENST00000272322 MEIS2O14770 477 aa18.35■□□□□ 0.53
VPS54-201ENST00000272322 SNHG28P0DPA3 235 aa18.35■□□□□ 0.53
VPS54-201ENST00000272322 CYP2C19P33261 490 aa18.35■□□□□ 0.53
VPS54-201ENST00000272322 C21orf2O43822 256 aa18.35■□□□□ 0.53
VPS54-201ENST00000272322 GPS2Q13227 327 aa18.35■□□□□ 0.53
VPS54-201ENST00000272322 ZC2HC1CQ53FD0 456 aaPredicted RBP18.35■□□□□ 0.53
VPS54-201ENST00000272322 ARSHQ5FYA8 562 aa18.35■□□□□ 0.53
VPS54-201ENST00000272322 SND1Q7KZF4 910 aaKnown RBP eCLIP18.35■□□□□ 0.53
VPS54-201ENST00000272322 FBXO11Q86XK2 927 aa18.35■□□□□ 0.53
VPS54-201ENST00000272322 SPAG5Q96R06 1193 aa18.35■□□□□ 0.53
VPS54-201ENST00000272322 PI4KBQ9UBF8 816 aa18.35■□□□□ 0.53
VPS54-201ENST00000272322 HYOU1Q9Y4L1 999 aa18.35■□□□□ 0.53
VPS54-201ENST00000272322 PVALEFA0A1B0GWK0 134 aa18.35■□□□□ 0.53
VPS54-201ENST00000272322 NPR1P16066 1061 aa18.35■□□□□ 0.53
VPS54-201ENST00000272322 PDIA5Q14554 519 aa18.35■□□□□ 0.53
VPS54-201ENST00000272322 KIAA0753Q2KHM9 967 aa18.35■□□□□ 0.53
VPS54-201ENST00000272322 REEP2Q9BRK0 252 aa18.35■□□□□ 0.53
VPS54-201ENST00000272322 MAGEF1Q9HAY2 307 aa18.35■□□□□ 0.53
VPS54-201ENST00000272322 HOMER2Q9NSB8 354 aa18.35■□□□□ 0.53
VPS54-201ENST00000272322 FBXO28Q9NVF7 368 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms