RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 MYO1EQ12965 1108 aa12.59□□□□□ -0.39
VPS33A-201ENST00000267199 FBXO11Q86XK2 927 aa12.59□□□□□ -0.39
VPS33A-201ENST00000267199 SH3RF3Q8TEJ3 882 aaPredicted RBP12.59□□□□□ -0.39
VPS33A-201ENST00000267199 OSBPL9Q96SU4 736 aa12.59□□□□□ -0.39
VPS33A-201ENST00000267199 SERPINB13Q9UIV8 391 aa12.59□□□□□ -0.39
VPS33A-201ENST00000267199 STK24Q9Y6E0 443 aa12.59□□□□□ -0.39
VPS33A-201ENST00000267199 RASSF2P50749 326 aa12.58□□□□□ -0.4
VPS33A-201ENST00000267199 ICA1Q05084 483 aa12.58□□□□□ -0.4
VPS33A-201ENST00000267199 TAF11Q15544 211 aa12.58□□□□□ -0.4
VPS33A-201ENST00000267199 UBE2SQ16763 222 aa12.58□□□□□ -0.4
VPS33A-201ENST00000267199 GPATCH4Q5T3I0 446 aaKnown RBP12.58□□□□□ -0.4
VPS33A-201ENST00000267199 CLEC4GQ6UXB4 293 aa12.58□□□□□ -0.4
VPS33A-201ENST00000267199 FAM178BQ8IXR5 827 aa12.58□□□□□ -0.4
VPS33A-201ENST00000267199 KIFC2Q96AC6 838 aa12.58□□□□□ -0.4
VPS33A-201ENST00000267199 FNBP1Q96RU3 617 aa12.58□□□□□ -0.4
VPS33A-201ENST00000267199 CXorf56Q9H5V9 222 aa12.58□□□□□ -0.4
VPS33A-201ENST00000267199 SH2D4AQ9H788 454 aa12.58□□□□□ -0.4
VPS33A-201ENST00000267199 AGTPBP1Q9UPW5 1226 aa12.58□□□□□ -0.4
VPS33A-201ENST00000267199 COL4A3BPQ9Y5P4 624 aa12.58□□□□□ -0.4
VPS33A-201ENST00000267199 MYCLP12524 364 aaPredicted RBP12.58□□□□□ -0.4
VPS33A-201ENST00000267199 SMTNP53814 917 aa12.58□□□□□ -0.4
VPS33A-201ENST00000267199 ATP2C1P98194 919 aaPredicted RBP12.58□□□□□ -0.4
VPS33A-201ENST00000267199 GFPT1Q06210 699 aaPredicted RBP12.58□□□□□ -0.4
VPS33A-201ENST00000267199 RBBP5Q15291 538 aaKnown RBP12.58□□□□□ -0.4
VPS33A-201ENST00000267199 FAM196AQ6ZSG2 479 aa12.58□□□□□ -0.4
VPS33A-201ENST00000267199 NLRP14Q86W24 1093 aa12.58□□□□□ -0.4
VPS33A-201ENST00000267199 SLFN12Q8IYM2 578 aa12.58□□□□□ -0.4
VPS33A-201ENST00000267199 SPATA4Q8NEY3 305 aa12.58□□□□□ -0.4
VPS33A-201ENST00000267199 GDAP1Q8TB36 358 aa12.58□□□□□ -0.4
VPS33A-201ENST00000267199 MIPOL1Q8TD10 442 aa12.58□□□□□ -0.4
VPS33A-201ENST00000267199 RAB3IPQ96QF0 476 aaPredicted RBP12.58□□□□□ -0.4
VPS33A-201ENST00000267199 TRIM6Q9C030 488 aaPredicted RBP12.58□□□□□ -0.4
VPS33A-201ENST00000267199 PPP1R21Q6ZMI0 780 aa12.58□□□□□ -0.4
VPS33A-201ENST00000267199 SEPT14Q6ZU15 432 aa12.58□□□□□ -0.4
VPS33A-201ENST00000267199 SRBD1Q8N5C6 995 aaKnown RBP12.58□□□□□ -0.4
VPS33A-201ENST00000267199 TTC16Q8NEE8 873 aa12.58□□□□□ -0.4
VPS33A-201ENST00000267199 FMO2Q99518 471 aa12.58□□□□□ -0.4
VPS33A-201ENST00000267199 METTL14Q9HCE5 456 aaKnown RBP12.58□□□□□ -0.4
VPS33A-201ENST00000267199 MLXIPLQ9NP71 852 aa12.58□□□□□ -0.4
VPS33A-201ENST00000267199 MAGOHP61326 146 aaKnown RBP12.57□□□□□ -0.4
VPS33A-201ENST00000267199 CLUL1Q15846 466 aa12.57□□□□□ -0.4
VPS33A-201ENST00000267199 BEND6Q5SZJ8 279 aaPredicted RBP12.57□□□□□ -0.4
VPS33A-201ENST00000267199 RAB3IL1Q8TBN0 382 aa12.57□□□□□ -0.4
VPS33A-201ENST00000267199 KIFAP3Q92845 792 aa12.57□□□□□ -0.4
VPS33A-201ENST00000267199 POC1B-GALNT4F8VUJ3 575 aa12.57□□□□□ -0.4
VPS33A-201ENST00000267199 TTLL1O95922 423 aa12.57□□□□□ -0.4
VPS33A-201ENST00000267199 KRT14P02533 472 aa12.57□□□□□ -0.4
VPS33A-201ENST00000267199 IRAK1P51617 712 aa12.57□□□□□ -0.4
VPS33A-201ENST00000267199 FAM84BQ96KN1 310 aaPredicted RBP12.57□□□□□ -0.4
VPS33A-201ENST00000267199 RNF14Q9UBS8 474 aa12.57□□□□□ -0.4
VPS33A-201ENST00000267199 SPATA31D1Q6ZQQ2 1576 aa12.57□□□□□ -0.4
VPS33A-201ENST00000267199 A0A1B0GTH6 734 aa12.57□□□□□ -0.4
VPS33A-201ENST00000267199 ANO9A1A5B4 782 aa12.57□□□□□ -0.4
VPS33A-201ENST00000267199 LRRC53A6NM62 1247 aa12.57□□□□□ -0.4
VPS33A-201ENST00000267199 TXNRD1Q16881 649 aa12.57□□□□□ -0.4
VPS33A-201ENST00000267199 CFAP157Q5JU67 520 aa12.57□□□□□ -0.4
VPS33A-201ENST00000267199 NUGGCQ68CJ6 796 aa12.57□□□□□ -0.4
VPS33A-201ENST00000267199 CYP4F22Q6NT55 531 aa12.57□□□□□ -0.4
VPS33A-201ENST00000267199 FAM167BQ9BTA0 163 aa12.57□□□□□ -0.4
VPS33A-201ENST00000267199 USP21Q9UK80 565 aa12.57□□□□□ -0.4
VPS33A-201ENST00000267199 POTEMA6NI47 508 aa12.57□□□□□ -0.4
VPS33A-201ENST00000267199 H0Y3Z8 333 aa12.57□□□□□ -0.4
VPS33A-201ENST00000267199 MEIS1O00470 390 aa12.57□□□□□ -0.4
VPS33A-201ENST00000267199 LRRN2O75325 713 aa12.57□□□□□ -0.4
VPS33A-201ENST00000267199 SNX1Q13596 522 aa12.57□□□□□ -0.4
VPS33A-201ENST00000267199 NSMFQ6X4W1 530 aa12.57□□□□□ -0.4
VPS33A-201ENST00000267199 DDX47Q9H0S4 455 aaKnown RBP12.57□□□□□ -0.4
VPS33A-201ENST00000267199 KLC4Q9NSK0 619 aa12.57□□□□□ -0.4
VPS33A-201ENST00000267199 BAZ2BQ9UIF8 2168 aaKnown RBP12.56□□□□□ -0.4
VPS33A-201ENST00000267199 SEC24CP53992 1094 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 HDLBPQ00341 1268 aaKnown RBP12.56□□□□□ -0.4
VPS33A-201ENST00000267199 PSMD6Q15008 389 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 WDR44Q5JSH3 913 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 CFAP61Q8NHU2 1237 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 NEK9Q8TD19 979 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 RILPQ96NA2 401 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 YIPF3Q9GZM5 350 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 HPCAL4Q9UM19 191 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 GMNCA6NCL1 334 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 MYO1FO00160 1098 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 MEFVO15553 781 aaPredicted RBP12.56□□□□□ -0.4
VPS33A-201ENST00000267199 MMEP08473 750 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 TROVE2P10155 538 aaKnown RBP eCLIP12.56□□□□□ -0.4
VPS33A-201ENST00000267199 POLE2P56282 527 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 CORO7P57737 925 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 ZNF449Q6P9G9 518 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 SDCCAG8Q86SQ7 713 aaPredicted RBP12.56□□□□□ -0.4
VPS33A-201ENST00000267199 SPICE1Q8N0Z3 855 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 STAG2Q8N3U4 1231 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 HVCN1Q96D96 273 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 TSNARE1Q96NA8 513 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 AMNQ9BXJ7 453 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 SH3GLB2Q9NR46 395 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 EMILIN3Q9NT22 766 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 ZNF446Q9NWS9 450 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 TXNDC16Q9P2K2 825 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 GFPT2O94808 682 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 COL9A3Q14050 684 aaPredicted RBP12.56□□□□□ -0.4
VPS33A-201ENST00000267199 PPP2R5EQ16537 467 aa12.56□□□□□ -0.4
VPS33A-201ENST00000267199 RASGRP2Q7LDG7 609 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms