RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 NPHP4O75161 1426 aaPredicted RBP11.68□□□□□ -0.54
CD44-201ENST00000263398 ARHGAP42A6NI28 874 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 LGALS16A8MUM7 142 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 ECEL1O95672 775 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 ARHGAP4P98171 946 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 NNTQ13423 1086 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 CLEC4GQ6UXB4 293 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 SLC7A3Q8WY07 619 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 GOLPH3LQ9H4A5 285 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 POC1B-GALNT4F8VUJ3 575 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 SERPINB2P05120 415 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 MXI1P50539 228 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 ALX1Q15699 326 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 CNOT10Q9H9A5 744 aaKnown RBP11.67□□□□□ -0.54
CD44-201ENST00000263398 ANKFY1Q9P2R3 1169 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 AXIN2Q9Y2T1 843 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 PNMA6FA0A0J9YX94 578 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 EIF3CLB5ME19 914 aaKnown RBP11.67□□□□□ -0.54
CD44-201ENST00000263398 MEIS1O00470 390 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 CAPN9O14815 690 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 PPEF1O14829 653 aaPredicted RBP11.67□□□□□ -0.54
CD44-201ENST00000263398 CDK8P49336 464 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 SLMAPQ14BN4 828 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 UNC13DQ70J99 1090 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 EIF3CQ99613 913 aaKnown RBP11.67□□□□□ -0.54
CD44-201ENST00000263398 PAGR1Q9BTK6 254 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.67□□□□□ -0.54
CD44-201ENST00000263398 PCDHB4Q9Y5E5 795 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 CCDC188H7C350 402 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 EVI5O60447 810 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 TMOD1P28289 359 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 CDC37Q16543 378 aaPredicted RBP11.67□□□□□ -0.54
CD44-201ENST00000263398 FAM196AQ6ZSG2 479 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 PI4KBQ9UBF8 816 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.67□□□□□ -0.54
CD44-201ENST00000263398 DIP2CQ9Y2E4 1556 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 ANO9A1A5B4 782 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 H7C0C1 242 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 INHBAP08476 426 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 ATP5OP48047 213 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 EIF3BP55884 814 aaKnown RBP11.67□□□□□ -0.54
CD44-201ENST00000263398 YWHAGP61981 247 aaKnown RBP eCLIP11.67□□□□□ -0.54
CD44-201ENST00000263398 CUL4BQ13620 913 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 SNCBQ16143 134 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 NEK9Q8TD19 979 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 CDKL2Q92772 493 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 ZNF408Q9H9D4 720 aa11.67□□□□□ -0.54
CD44-201ENST00000263398 MRPL47Q9HD33 250 aaKnown RBP11.67□□□□□ -0.54
CD44-201ENST00000263398 SH3BP5O60239 455 aa11.66□□□□□ -0.54
CD44-201ENST00000263398 UBXN2AP68543 259 aa11.66□□□□□ -0.54
CD44-201ENST00000263398 TERF2Q15554 542 aa11.66□□□□□ -0.54
CD44-201ENST00000263398 PFKFB3Q16875 520 aaPredicted RBP11.66□□□□□ -0.54
CD44-201ENST00000263398 ARHGEF18Q6ZSZ5 1173 aa11.66□□□□□ -0.54
CD44-201ENST00000263398 CFAP61Q8NHU2 1237 aa11.66□□□□□ -0.54
CD44-201ENST00000263398 FMO2Q99518 471 aa11.66□□□□□ -0.54
CD44-201ENST00000263398 KMT5AQ9NQR1 393 aa11.66□□□□□ -0.54
CD44-201ENST00000263398 ABHD10Q9NUJ1 306 aa11.66□□□□□ -0.54
CD44-201ENST00000263398 AFG3L2Q9Y4W6 797 aa11.66□□□□□ -0.54
CD44-201ENST00000263398 MED14O60244 1454 aa11.66□□□□□ -0.54
CD44-201ENST00000263398 NR1D1P20393 614 aa11.66□□□□□ -0.54
CD44-201ENST00000263398 PPP2R5CQ13362 524 aa11.66□□□□□ -0.54
CD44-201ENST00000263398 CCDC144BQ3MJ40 725 aa11.66□□□□□ -0.54
CD44-201ENST00000263398 FAM160B1Q5W0V3 765 aa11.66□□□□□ -0.54
CD44-201ENST00000263398 RINT1Q6NUQ1 792 aa11.66□□□□□ -0.54
CD44-201ENST00000263398 CYB5R4Q7L1T6 521 aa11.66□□□□□ -0.54
CD44-201ENST00000263398 PLCD3Q8N3E9 789 aa11.66□□□□□ -0.54
CD44-201ENST00000263398 NACA2Q9H009 215 aa11.66□□□□□ -0.54
CD44-201ENST00000263398 RNASELQ05823 741 aaKnown RBP11.66□□□□□ -0.54
CD44-201ENST00000263398 GLE1Q53GS7 698 aaKnown RBP11.66□□□□□ -0.54
CD44-201ENST00000263398 JPH2Q9BR39 696 aaPredicted RBP11.66□□□□□ -0.54
CD44-201ENST00000263398 MXD3Q9BW11 206 aa11.66□□□□□ -0.54
CD44-201ENST00000263398 MAD1L1Q9Y6D9 718 aa11.66□□□□□ -0.54
CD44-201ENST00000263398 USH1CQ9Y6N9 552 aa11.66□□□□□ -0.54
CD44-201ENST00000263398 ABCD1P33897 745 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 STAT2P52630 851 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 CUL1Q13616 776 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 RPS6KA2Q15349 733 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 HLFQ16534 295 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 UBE2SQ16763 222 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 CDHR1Q96JP9 859 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 UBE2TQ9NPD8 197 aaPredicted RBP11.65□□□□□ -0.54
CD44-201ENST00000263398 ZNF277Q9NRM2 450 aaPredicted RBP11.65□□□□□ -0.54
CD44-201ENST00000263398 NEDD4P46934 1319 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 SYDE2Q5VT97 1194 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 CYP4F22Q6NT55 531 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 TOGARAM2Q6ZUX3 1019 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 CEP170P1Q96L14 293 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 GBP5Q96PP8 586 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 ANO3Q9BYT9 981 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 BHMT2Q9H2M3 363 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 LY9Q9HBG7 655 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 SEPT9Q9UHD8 586 aaPredicted RBP11.65□□□□□ -0.54
CD44-201ENST00000263398 ANAPC5Q9UJX4 755 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 PVALEFA0A1B0GWK0 134 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 HMGB1P1B2RPK0 211 aaPredicted RBP11.65□□□□□ -0.54
CD44-201ENST00000263398 SGK1O00141 431 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 KIF3CO14782 793 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 ALCAMQ13740 583 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 SGMS1Q86VZ5 419 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 PROM2Q8N271 834 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms