RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 CTTNQ14247 550 aaKnown RBP9.46□□□□□ -0.9
PTCD3-201ENST00000254630 SURF1Q15526 300 aa9.46□□□□□ -0.9
PTCD3-201ENST00000254630 MAN2A1Q16706 1144 aa9.46□□□□□ -0.9
PTCD3-201ENST00000254630 GRAMD1CQ8IYS0 662 aa9.46□□□□□ -0.9
PTCD3-201ENST00000254630 FBXO18Q8NFZ0 1043 aa9.46□□□□□ -0.9
PTCD3-201ENST00000254630 OSBP2Q969R2 916 aa9.46□□□□□ -0.9
PTCD3-201ENST00000254630 A2ML1A8K2U0 1454 aa9.46□□□□□ -0.9
PTCD3-201ENST00000254630 UBN2Q6ZU65 1347 aa9.46□□□□□ -0.9
PTCD3-201ENST00000254630 C21orf2O43822 256 aa9.46□□□□□ -0.9
PTCD3-201ENST00000254630 TFAMQ00059 246 aaKnown RBP9.46□□□□□ -0.9
PTCD3-201ENST00000254630 PTPN12Q05209 780 aaKnown RBP9.46□□□□□ -0.9
PTCD3-201ENST00000254630 ALCAMQ13740 583 aa9.46□□□□□ -0.9
PTCD3-201ENST00000254630 RNF207Q6ZRF8 634 aa9.46□□□□□ -0.9
PTCD3-201ENST00000254630 RASSF4Q9H2L5 321 aa9.46□□□□□ -0.9
PTCD3-201ENST00000254630 MYO3BQ8WXR4 1341 aa9.46□□□□□ -0.9
PTCD3-201ENST00000254630 ARHGEF37A1IGU5 675 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 YWHAGP61981 247 aaKnown RBP eCLIP9.45□□□□□ -0.9
PTCD3-201ENST00000254630 RASGRF1Q13972 1273 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 TRMT2AQ8IZ69 625 aaKnown RBP9.45□□□□□ -0.9
PTCD3-201ENST00000254630 TCP11Q8WWU5 503 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 EFCC1Q9HA90 598 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 STK38LQ9Y2H1 464 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 RASSF2P50749 326 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 PKP1Q13835 747 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 DIXDC1Q155Q3 683 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.45□□□□□ -0.9
PTCD3-201ENST00000254630 CABS1Q96KC9 395 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 HAUS4Q9H6D7 363 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 NEDD4P46934 1319 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 TXNDC9O14530 226 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 HOXA7P31268 230 aaPredicted RBP9.45□□□□□ -0.9
PTCD3-201ENST00000254630 JAK3P52333 1124 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 GNGT1P63211 74 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 SNX1Q13596 522 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 SCARA5Q6ZMJ2 495 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 TMEM179Q6ZVK1 233 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 BRINP3Q76B58 766 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 RNF10Q8N5U6 811 aaKnown RBP9.45□□□□□ -0.9
PTCD3-201ENST00000254630 HDAC11Q96DB2 347 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 MRFAP1L1Q96HT8 127 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 PARVGQ9HBI0 331 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 SPATA31A3Q5VYP0 1347 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 PLCG1P19174 1290 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 OSTNP61366 133 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 GOLGA8FQ08AF8 430 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 GOLGA8DPQ0D2H9 430 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 SEPT6Q14141 434 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 STAG1Q8WVM7 1258 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 EPN1Q9Y6I3 576 aaPredicted RBP9.45□□□□□ -0.9
PTCD3-201ENST00000254630 TTC36A6NLP5 189 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 MCF2LO15068 1137 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 RPS6KA4O75676 772 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 GFPT2O94808 682 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 CPP00450 1065 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 NAA35Q5VZE5 725 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 TBC1D9BQ66K14 1250 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 FAM133AQ8N9E0 248 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 CFAP36Q96G28 342 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 PAGE5Q96GU1 130 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 HEXIM2Q96MH2 286 aaKnown RBP9.45□□□□□ -0.9
PTCD3-201ENST00000254630 MSTO1Q9BUK6 570 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 BRIP1Q9BX63 1249 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 CPDO75976 1380 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 EFCAB8A8MWE9 144 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 ACTN1P12814 892 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 TSTA3Q13630 321 aaPredicted RBP9.45□□□□□ -0.9
PTCD3-201ENST00000254630 HLFQ16534 295 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 FAM83BQ5T0W9 1011 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 HVCN1Q96D96 273 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 ZSWIM5Q9P217 1185 aa9.45□□□□□ -0.9
PTCD3-201ENST00000254630 AFF2P51816 1311 aa9.44□□□□□ -0.9
PTCD3-201ENST00000254630 ESYT2A0FGR8 921 aa9.44□□□□□ -0.9
PTCD3-201ENST00000254630 EHHADHQ08426 723 aa9.44□□□□□ -0.9
PTCD3-201ENST00000254630 DNAJC24Q6P3W2 148 aa9.44□□□□□ -0.9
PTCD3-201ENST00000254630 CCDC170Q8IYT3 715 aa9.44□□□□□ -0.9
PTCD3-201ENST00000254630 RASEFQ8IZ41 740 aa9.44□□□□□ -0.9
PTCD3-201ENST00000254630 SIX6OS1Q8N1H7 587 aa9.44□□□□□ -0.9
PTCD3-201ENST00000254630 C2orf69Q8N8R5 385 aa9.44□□□□□ -0.9
PTCD3-201ENST00000254630 GIMAP8Q8ND71 665 aaPredicted RBP9.44□□□□□ -0.9
PTCD3-201ENST00000254630 SPZ1Q9BXG8 430 aa9.44□□□□□ -0.9
PTCD3-201ENST00000254630 ANGPTL3Q9Y5C1 460 aa9.44□□□□□ -0.9
PTCD3-201ENST00000254630 ARHGEF40Q8TER5 1519 aa9.44□□□□□ -0.9
PTCD3-201ENST00000254630 ARHGAP42A6NI28 874 aa9.44□□□□□ -0.9
PTCD3-201ENST00000254630 LRRN2O75325 713 aa9.44□□□□□ -0.9
PTCD3-201ENST00000254630 MOCS3O95396 460 aa9.44□□□□□ -0.9
PTCD3-201ENST00000254630 C2orf54Q08AI8 447 aa9.44□□□□□ -0.9
PTCD3-201ENST00000254630 MAP3K21Q5TCX8 1036 aa9.44□□□□□ -0.9
PTCD3-201ENST00000254630 DARS2Q6PI48 645 aaKnown RBP9.44□□□□□ -0.9
PTCD3-201ENST00000254630 SRPRBQ9Y5M8 271 aaKnown RBP9.44□□□□□ -0.9
PTCD3-201ENST00000254630 E9PCH4 1651 aa9.44□□□□□ -0.9
PTCD3-201ENST00000254630 GOLGA8SH3BPF8 625 aa9.44□□□□□ -0.9
PTCD3-201ENST00000254630 IGSF3O75054 1194 aa9.44□□□□□ -0.9
PTCD3-201ENST00000254630 PLEKHA8P1O95397 391 aa9.44□□□□□ -0.9
PTCD3-201ENST00000254630 SERPING1P05155 500 aa9.44□□□□□ -0.9
PTCD3-201ENST00000254630 MMP10P09238 476 aa9.44□□□□□ -0.9
PTCD3-201ENST00000254630 MCAMP43121 646 aa9.44□□□□□ -0.9
PTCD3-201ENST00000254630 ARHGEF18Q6ZSZ5 1173 aa9.44□□□□□ -0.9
PTCD3-201ENST00000254630 RSRC2Q7L4I2 434 aaKnown RBP9.44□□□□□ -0.9
PTCD3-201ENST00000254630 FAM114A2Q9NRY5 505 aa9.44□□□□□ -0.9
PTCD3-201ENST00000254630 KLHL14Q9P2G3 628 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms