RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 THRAP3Q9Y2W1 955 aaKnown RBP13.16□□□□□ -0.3
USHBP1-201ENST00000252597 C6orf229H3BNL8 230 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 RPSAP08865 295 aaKnown RBP13.16□□□□□ -0.3
USHBP1-201ENST00000252597 ADCY1Q08828 1119 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 ADAM9Q13443 819 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 KCNB1Q14721 858 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 FAM26FQ5R3K3 315 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 KLHDC7AQ5VTJ3 777 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 KCTD1Q719H9 257 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 MAEAQ7L5Y9 396 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 DAAM2Q86T65 1068 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 RETREG2Q8NC44 543 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 GIMAP7Q8NHV1 300 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 TBC1D31Q96DN5 1066 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 CEP95Q96GE4 821 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 ZNF219Q9P2Y4 722 aaPredicted RBP13.16□□□□□ -0.3
USHBP1-201ENST00000252597 ANAPC4Q9UJX5 808 aa13.16□□□□□ -0.3
USHBP1-201ENST00000252597 MYH15Q9Y2K3 1946 aa13.15□□□□□ -0.3
USHBP1-201ENST00000252597 GCOM1H8Y6P7 765 aaPredicted RBP13.15□□□□□ -0.3
USHBP1-201ENST00000252597 KRIT1O00522 736 aa13.15□□□□□ -0.3
USHBP1-201ENST00000252597 MYZAPP0CAP1 466 aa13.15□□□□□ -0.3
USHBP1-201ENST00000252597 KRT13P13646 458 aa13.15□□□□□ -0.3
USHBP1-201ENST00000252597 MEA1Q16626 185 aa13.15□□□□□ -0.3
USHBP1-201ENST00000252597 GJB7Q6PEY0 223 aa13.15□□□□□ -0.3
USHBP1-201ENST00000252597 RAB34Q9BZG1 259 aa13.15□□□□□ -0.3
USHBP1-201ENST00000252597 ATP8A1Q9Y2Q0 1164 aa13.15□□□□□ -0.3
USHBP1-201ENST00000252597 ZNF804BA4D1E1 1349 aa13.15□□□□□ -0.3
USHBP1-201ENST00000252597 FAM196BA6NMK8 535 aa13.15□□□□□ -0.3
USHBP1-201ENST00000252597 TAL1P17542 331 aaPredicted RBP13.15□□□□□ -0.3
USHBP1-201ENST00000252597 MAP2K2P36507 400 aa13.15□□□□□ -0.3
USHBP1-201ENST00000252597 PABPC4Q13310 644 aaKnown RBP eCLIP13.15□□□□□ -0.3
USHBP1-201ENST00000252597 TBC1D9BQ66K14 1250 aa13.15□□□□□ -0.3
USHBP1-201ENST00000252597 GBP6Q6ZN66 633 aa13.15□□□□□ -0.3
USHBP1-201ENST00000252597 GPBP1Q86WP2 473 aa13.15□□□□□ -0.3
USHBP1-201ENST00000252597 MDM1Q8TC05 714 aa13.15□□□□□ -0.3
USHBP1-201ENST00000252597 MGARPQ8TDB4 240 aa13.15□□□□□ -0.3
USHBP1-201ENST00000252597 U2AF1L4Q8WU68 220 aaKnown RBP13.15□□□□□ -0.3
USHBP1-201ENST00000252597 CCSER1Q9C0I3 900 aa13.15□□□□□ -0.3
USHBP1-201ENST00000252597 NUP188Q5SRE5 1749 aa13.15□□□□□ -0.31
USHBP1-201ENST00000252597 USP17L15C9J2P7 530 aa13.15□□□□□ -0.31
USHBP1-201ENST00000252597 USP17L13C9JLJ4 530 aa13.15□□□□□ -0.31
USHBP1-201ENST00000252597 USP17L11C9JVI0 530 aa13.15□□□□□ -0.31
USHBP1-201ENST00000252597 USP17L18D6R9N7 530 aa13.15□□□□□ -0.31
USHBP1-201ENST00000252597 USP17L22D6RA61 530 aa13.15□□□□□ -0.31
USHBP1-201ENST00000252597 USP17L17D6RBQ6 530 aa13.15□□□□□ -0.31
USHBP1-201ENST00000252597 USP17L19D6RCP7 530 aa13.15□□□□□ -0.31
USHBP1-201ENST00000252597 USP17L20D6RJB6 530 aa13.15□□□□□ -0.31
USHBP1-201ENST00000252597 DAPK3O43293 454 aa13.15□□□□□ -0.31
USHBP1-201ENST00000252597 TNNC1P63316 161 aa13.15□□□□□ -0.31
USHBP1-201ENST00000252597 USP17L24Q0WX57 530 aa13.15□□□□□ -0.31
USHBP1-201ENST00000252597 ZNF211Q13398 564 aaPredicted RBP13.15□□□□□ -0.31
USHBP1-201ENST00000252597 USP17L6PQ6QN14 398 aa13.15□□□□□ -0.31
USHBP1-201ENST00000252597 PCNTO95613 3336 aa13.14□□□□□ -0.31
USHBP1-201ENST00000252597 POTEB3A0JP26 581 aa13.14□□□□□ -0.31
USHBP1-201ENST00000252597 ZNF233A6NK53 670 aa13.14□□□□□ -0.31
USHBP1-201ENST00000252597 EIF4E1BA6NMX2 242 aaKnown RBP13.14□□□□□ -0.31
USHBP1-201ENST00000252597 POTECB2RU33 542 aa13.14□□□□□ -0.31
USHBP1-201ENST00000252597 CHMP2AO43633 222 aa13.14□□□□□ -0.31
USHBP1-201ENST00000252597 SLC9A1P19634 815 aa13.14□□□□□ -0.31
USHBP1-201ENST00000252597 BTDP43251 543 aa13.14□□□□□ -0.31
USHBP1-201ENST00000252597 MCTP2Q6DN12 878 aa13.14□□□□□ -0.31
USHBP1-201ENST00000252597 TTBK2Q6IQ55 1244 aa13.14□□□□□ -0.31
USHBP1-201ENST00000252597 EMBQ6PCB8 327 aa13.14□□□□□ -0.31
USHBP1-201ENST00000252597 POTEBQ6S5H4 581 aa13.14□□□□□ -0.31
USHBP1-201ENST00000252597 B4GALNT4Q76KP1 1039 aa13.14□□□□□ -0.31
USHBP1-201ENST00000252597 PEX26Q7Z412 305 aa13.14□□□□□ -0.31
USHBP1-201ENST00000252597 ZSCAN29Q8IWY8 852 aaPredicted RBP13.14□□□□□ -0.31
USHBP1-201ENST00000252597 CCT8L2Q96SF2 557 aa13.14□□□□□ -0.31
USHBP1-201ENST00000252597 PCDHA12Q9UN75 941 aa13.14□□□□□ -0.31
USHBP1-201ENST00000252597 ATRNO75882 1429 aa13.14□□□□□ -0.31
USHBP1-201ENST00000252597 PLCH1Q4KWH8 1693 aa13.14□□□□□ -0.31
USHBP1-201ENST00000252597 PHF20L1A8MW92 1017 aa13.14□□□□□ -0.31
USHBP1-201ENST00000252597 GNPATO15228 680 aa13.14□□□□□ -0.31
USHBP1-201ENST00000252597 RCAN1P53805 252 aa13.14□□□□□ -0.31
USHBP1-201ENST00000252597 GRB10Q13322 594 aa13.14□□□□□ -0.31
USHBP1-201ENST00000252597 ARHGAP44Q17R89 818 aa13.14□□□□□ -0.31
USHBP1-201ENST00000252597 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.14□□□□□ -0.31
USHBP1-201ENST00000252597 COL4A3BPQ9Y5P4 624 aa13.14□□□□□ -0.31
USHBP1-201ENST00000252597 G3V3G9 751 aa13.13□□□□□ -0.31
USHBP1-201ENST00000252597 DHX9Q08211 1270 aaKnown RBP13.13□□□□□ -0.31
USHBP1-201ENST00000252597 USH1GQ495M9 461 aa13.13□□□□□ -0.31
USHBP1-201ENST00000252597 DCAF8Q5TAQ9 597 aa13.13□□□□□ -0.31
USHBP1-201ENST00000252597 C12orf60Q5U649 245 aa13.13□□□□□ -0.31
USHBP1-201ENST00000252597 PDXDC1Q6P996 788 aa13.13□□□□□ -0.31
USHBP1-201ENST00000252597 PNMA8AQ86V59 439 aaPredicted RBP13.13□□□□□ -0.31
USHBP1-201ENST00000252597 IKZF4Q9H2S9 585 aa13.13□□□□□ -0.31
USHBP1-201ENST00000252597 MLXIPLQ9NP71 852 aa13.13□□□□□ -0.31
USHBP1-201ENST00000252597 AFF2P51816 1311 aa13.13□□□□□ -0.31
USHBP1-201ENST00000252597 ITGA4P13612 1032 aa13.13□□□□□ -0.31
USHBP1-201ENST00000252597 NR2F2P24468 414 aa13.13□□□□□ -0.31
USHBP1-201ENST00000252597 GUCY2CP25092 1073 aa13.13□□□□□ -0.31
USHBP1-201ENST00000252597 ADCY7P51828 1080 aa13.13□□□□□ -0.31
USHBP1-201ENST00000252597 MICALCLQ6ZW33 695 aa13.13□□□□□ -0.31
USHBP1-201ENST00000252597 MMGT1Q8N4V1 131 aa13.13□□□□□ -0.31
USHBP1-201ENST00000252597 ZNF473Q8WTR7 871 aaKnown RBP13.13□□□□□ -0.31
USHBP1-201ENST00000252597 FAM212AQ96EL1 285 aa13.13□□□□□ -0.31
USHBP1-201ENST00000252597 TTYH3Q9C0H2 523 aa13.13□□□□□ -0.31
USHBP1-201ENST00000252597 BSDC1Q9NW68 430 aaPredicted RBP13.13□□□□□ -0.31
USHBP1-201ENST00000252597 COL22A1Q8NFW1 1626 aaPredicted RBP13.13□□□□□ -0.31
USHBP1-201ENST00000252597 ORC4O43929 436 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms