RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 KIAA1024Q9UPX6 916 aa18.15■□□□□ 0.5
HOXD3-201ENST00000249440 HYOU1Q9Y4L1 999 aa18.15■□□□□ 0.5
HOXD3-201ENST00000249440 POLRMTO00411 1230 aaKnown RBP18.14■□□□□ 0.49
HOXD3-201ENST00000249440 PHACTR2O75167 634 aa18.14■□□□□ 0.49
HOXD3-201ENST00000249440 CAPN2P17655 700 aa18.14■□□□□ 0.49
HOXD3-201ENST00000249440 USP11P51784 963 aa18.14■□□□□ 0.49
HOXD3-201ENST00000249440 LEKR1Q6ZMV7 388 aa18.14■□□□□ 0.49
HOXD3-201ENST00000249440 RNF10Q8N5U6 811 aaKnown RBP18.14■□□□□ 0.49
HOXD3-201ENST00000249440 RUBCNQ92622 972 aa18.14■□□□□ 0.49
HOXD3-201ENST00000249440 ZBTB9Q96C00 473 aa18.14■□□□□ 0.49
HOXD3-201ENST00000249440 DRC1Q96MC2 740 aa18.14■□□□□ 0.49
HOXD3-201ENST00000249440 OSBPL9Q96SU4 736 aa18.14■□□□□ 0.49
HOXD3-201ENST00000249440 HPCAL4Q9UM19 191 aa18.14■□□□□ 0.49
HOXD3-201ENST00000249440 A0A0U1RQG5 324 aaPredicted RBP18.14■□□□□ 0.49
HOXD3-201ENST00000249440 E9PMD0 336 aa18.14■□□□□ 0.49
HOXD3-201ENST00000249440 ZMYND10O75800 440 aa18.14■□□□□ 0.49
HOXD3-201ENST00000249440 PLA2G4BP0C869 781 aa18.14■□□□□ 0.49
HOXD3-201ENST00000249440 GFPT1Q06210 699 aaPredicted RBP18.14■□□□□ 0.49
HOXD3-201ENST00000249440 TDRD12Q587J7 1177 aaKnown RBP18.14■□□□□ 0.49
HOXD3-201ENST00000249440 CDC42EP5Q6NZY7 148 aa18.14■□□□□ 0.49
HOXD3-201ENST00000249440 HHIPL2Q6UWX4 724 aa18.14■□□□□ 0.49
HOXD3-201ENST00000249440 CCDC155Q8N6L0 562 aa18.14■□□□□ 0.49
HOXD3-201ENST00000249440 RGPD3A6NKT7 1758 aaPredicted RBP18.13■□□□□ 0.49
HOXD3-201ENST00000249440 RGPD4Q7Z3J3 1758 aa18.13■□□□□ 0.49
HOXD3-201ENST00000249440 MARSP56192 900 aaKnown RBP18.13■□□□□ 0.49
HOXD3-201ENST00000249440 SFMBT2Q5VUG0 894 aa18.13■□□□□ 0.49
HOXD3-201ENST00000249440 HGSNATQ68CP4 663 aa18.13■□□□□ 0.49
HOXD3-201ENST00000249440 GOLGA6L1Q8N7Z2 621 aa18.13■□□□□ 0.49
HOXD3-201ENST00000249440 SPATA4Q8NEY3 305 aa18.13■□□□□ 0.49
HOXD3-201ENST00000249440 TEKT1Q969V4 418 aa18.13■□□□□ 0.49
HOXD3-201ENST00000249440 NOX5Q96PH1 765 aa18.13■□□□□ 0.49
HOXD3-201ENST00000249440 EHD4Q9H223 541 aa18.13■□□□□ 0.49
HOXD3-201ENST00000249440 LUC7LQ9NQ29 371 aaKnown RBP18.13■□□□□ 0.49
HOXD3-201ENST00000249440 RBAK-RBAKDNI3L0D1 243 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 SCNN1DP51172 638 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 HERC4Q5GLZ8 1057 aaPredicted RBP18.12■□□□□ 0.49
HOXD3-201ENST00000249440 FAM83BQ5T0W9 1011 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 CCDC181Q5TID7 509 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 CRACR2AQ9BSW2 395 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 SELENOOQ9BVL4 669 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 NLRC4Q9NPP4 1024 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 TBC1D7Q9P0N9 293 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 PCDHA2Q9Y5H9 948 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 PCDHA1Q9Y5I3 950 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.12■□□□□ 0.49
HOXD3-201ENST00000249440 USP17L15C9J2P7 530 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 USP17L13C9JLJ4 530 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 USP17L11C9JVI0 530 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 USP17L18D6R9N7 530 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 USP17L22D6RA61 530 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 USP17L17D6RBQ6 530 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 USP17L19D6RCP7 530 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 USP17L20D6RJB6 530 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 SYF2O95926 243 aaKnown RBP18.12■□□□□ 0.49
HOXD3-201ENST00000249440 SERPING1P05155 500 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 RASSF7Q02833 373 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 USP17L24Q0WX57 530 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 USP17L6PQ6QN14 398 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 SLFN12Q8IYM2 578 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 FAM204AQ9H8W3 233 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 KCNMB3Q9NPA1 279 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 EMILIN3Q9NT22 766 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 FAM184BQ9ULE4 1060 aa18.12■□□□□ 0.49
HOXD3-201ENST00000249440 CYP3A7-CYP3A51PA0A087WV96 503 aa18.11■□□□□ 0.49
HOXD3-201ENST00000249440 RNF40O75150 1001 aa18.11■□□□□ 0.49
HOXD3-201ENST00000249440 CYP3A7P24462 503 aa18.11■□□□□ 0.49
HOXD3-201ENST00000249440 PAFAH1B1P43034 410 aa18.11■□□□□ 0.49
HOXD3-201ENST00000249440 SLC15A2Q16348 729 aa18.11■□□□□ 0.49
HOXD3-201ENST00000249440 QRICH1Q2TAL8 776 aa18.11■□□□□ 0.49
HOXD3-201ENST00000249440 NFRKBQ6P4R8 1299 aa18.11■□□□□ 0.49
HOXD3-201ENST00000249440 GPBP1Q86WP2 473 aa18.11■□□□□ 0.49
HOXD3-201ENST00000249440 TRIM59Q8IWR1 403 aa18.11■□□□□ 0.49
HOXD3-201ENST00000249440 TSKSQ9UJT2 592 aa18.11■□□□□ 0.49
HOXD3-201ENST00000249440 ATAD5Q96QE3 1844 aa18.11■□□□□ 0.49
HOXD3-201ENST00000249440 POTEB3A0JP26 581 aa18.11■□□□□ 0.49
HOXD3-201ENST00000249440 POTECB2RU33 542 aa18.11■□□□□ 0.49
HOXD3-201ENST00000249440 NOL4O94818 638 aa18.11■□□□□ 0.49
HOXD3-201ENST00000249440 MYBL2P10244 700 aa18.11■□□□□ 0.49
HOXD3-201ENST00000249440 SLC1A4P43007 532 aa18.11■□□□□ 0.49
HOXD3-201ENST00000249440 HAUS3Q68CZ6 603 aa18.11■□□□□ 0.49
HOXD3-201ENST00000249440 APOBEC3HQ6NTF7 200 aaKnown RBP18.11■□□□□ 0.49
HOXD3-201ENST00000249440 POTEBQ6S5H4 581 aa18.11■□□□□ 0.49
HOXD3-201ENST00000249440 MOXD1Q6UVY6 613 aa18.11■□□□□ 0.49
HOXD3-201ENST00000249440 PPP4R3CPQ6ZMV5 832 aa18.11■□□□□ 0.49
HOXD3-201ENST00000249440 NELFCDQ8IXH7 590 aa18.11■□□□□ 0.49
HOXD3-201ENST00000249440 MXD3Q9BW11 206 aa18.11■□□□□ 0.49
HOXD3-201ENST00000249440 ANO3Q9BYT9 981 aa18.11■□□□□ 0.49
HOXD3-201ENST00000249440 SALL4Q9UJQ4 1053 aa18.11■□□□□ 0.49
HOXD3-201ENST00000249440 PITPNM2Q9BZ72 1349 aa18.11■□□□□ 0.49
HOXD3-201ENST00000249440 RAD21O60216 631 aa18.1■□□□□ 0.49
HOXD3-201ENST00000249440 KRT18P05783 430 aaKnown RBP18.1■□□□□ 0.49
HOXD3-201ENST00000249440 CYP11B2P19099 503 aa18.1■□□□□ 0.49
HOXD3-201ENST00000249440 BAG6P46379 1132 aa18.1■□□□□ 0.49
HOXD3-201ENST00000249440 NAP1L1P55209 391 aaKnown RBP18.1■□□□□ 0.49
HOXD3-201ENST00000249440 POLR2FP61218 127 aaKnown RBP18.1■□□□□ 0.49
HOXD3-201ENST00000249440 SF3B2Q13435 895 aaKnown RBP18.1■□□□□ 0.49
HOXD3-201ENST00000249440 ANKRD13CQ8N6S4 541 aa18.1■□□□□ 0.49
HOXD3-201ENST00000249440 DCAF4Q8WV16 495 aa18.1■□□□□ 0.49
HOXD3-201ENST00000249440 SCFD1Q8WVM8 642 aa18.1■□□□□ 0.49
HOXD3-201ENST00000249440 MKL1Q969V6 931 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms