RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 PAK2Q13177 524 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 ITGB3BPQ13352 177 aaPredicted RBP13.65□□□□□ -0.22
NUP88-201ENST00000225696 RAPGEF1Q13905 1077 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 CEP85LQ5SZL2 805 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 LINC00116Q8NCU8 138 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 SNED1Q8TER0 1413 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 ZNF473Q8WTR7 871 aaKnown RBP13.65□□□□□ -0.22
NUP88-201ENST00000225696 CDK5RAP3Q96JB5 506 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 CCT8L2Q96SF2 557 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 EYA3Q99504 573 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 NEUROG2Q9H2A3 272 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 CENPHQ9H3R5 247 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 CEP72Q9P209 647 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 ZNF652Q9Y2D9 606 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 ATP6V0A2Q9Y487 856 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 PCDHGC5Q9Y5F6 944 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 COL4A3BPQ9Y5P4 624 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 ROBO3Q96MS0 1386 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 LOC102724159A0A0B4J2E5 919 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 PPP1R37O75864 691 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 LDHBP07195 334 aaKnown RBP13.65□□□□□ -0.22
NUP88-201ENST00000225696 FLT3P36888 993 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 CDK8P49336 464 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 FXR2P51116 673 aaKnown RBP eCLIP13.65□□□□□ -0.22
NUP88-201ENST00000225696 PWP2Q15269 919 aaKnown RBP13.65□□□□□ -0.22
NUP88-201ENST00000225696 UAP1Q16222 522 aaPredicted RBP13.65□□□□□ -0.22
NUP88-201ENST00000225696 SLC18A3Q16572 532 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 CCDC40Q4G0X9 1142 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 SOGA3Q5TF21 947 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 MAATS1Q7Z4T9 603 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 CLEC10AQ8IUN9 316 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 MYOCDQ8IZQ8 938 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 CNPY4Q8N129 248 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 PRPF38AQ8NAV1 312 aaKnown RBP13.65□□□□□ -0.22
NUP88-201ENST00000225696 USP38Q8NB14 1042 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 ATP6V1G3Q96LB4 118 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 AP1M1Q9BXS5 423 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 STK17AQ9UEE5 414 aa13.65□□□□□ -0.22
NUP88-201ENST00000225696 SRP68Q9UHB9 627 aaKnown RBP13.65□□□□□ -0.22
NUP88-201ENST00000225696 ABCB11O95342 1321 aa13.65□□□□□ -0.23
NUP88-201ENST00000225696 FAM170AA1A519 330 aa13.64□□□□□ -0.23
NUP88-201ENST00000225696 SSBP05455 408 aaKnown RBP eCLIP13.64□□□□□ -0.23
NUP88-201ENST00000225696 MDH1P40925 334 aaKnown RBP13.64□□□□□ -0.23
NUP88-201ENST00000225696 MNAT1P51948 309 aa13.64□□□□□ -0.23
NUP88-201ENST00000225696 UBE2SQ16763 222 aa13.64□□□□□ -0.23
NUP88-201ENST00000225696 SPRED3Q2MJR0 410 aa13.64□□□□□ -0.23
NUP88-201ENST00000225696 CHADLQ6NUI6 762 aa13.64□□□□□ -0.23
NUP88-201ENST00000225696 MREGQ8N565 214 aa13.64□□□□□ -0.23
NUP88-201ENST00000225696 OTUD6BQ8N6M0 293 aa13.64□□□□□ -0.23
NUP88-201ENST00000225696 MYCBPAPQ8TBZ2 947 aa13.64□□□□□ -0.23
NUP88-201ENST00000225696 CERKQ8TCT0 537 aa13.64□□□□□ -0.23
NUP88-201ENST00000225696 KCNK3O14649 394 aa13.64□□□□□ -0.23
NUP88-201ENST00000225696 MYBP10242 640 aa13.64□□□□□ -0.23
NUP88-201ENST00000225696 FKBP3Q00688 224 aaKnown RBP13.64□□□□□ -0.23
NUP88-201ENST00000225696 TMEM119Q4V9L6 283 aa13.64□□□□□ -0.23
NUP88-201ENST00000225696 CLEC4GQ6UXB4 293 aa13.64□□□□□ -0.23
NUP88-201ENST00000225696 NLRP14Q86W24 1093 aa13.64□□□□□ -0.23
NUP88-201ENST00000225696 CD302Q8IX05 232 aa13.64□□□□□ -0.23
NUP88-201ENST00000225696 HAS1Q92839 578 aa13.64□□□□□ -0.23
NUP88-201ENST00000225696 PPANQ9NQ55 473 aaKnown RBP13.64□□□□□ -0.23
NUP88-201ENST00000225696 SEC63Q9UGP8 760 aaKnown RBP13.64□□□□□ -0.23
NUP88-201ENST00000225696 TMEM59LQ9UK28 342 aa13.64□□□□□ -0.23
NUP88-201ENST00000225696 CCDC88AQ3V6T2 1871 aa13.63□□□□□ -0.23
NUP88-201ENST00000225696 DCDC2CA8MYV0 355 aa13.63□□□□□ -0.23
NUP88-201ENST00000225696 E9PMD0 336 aa13.63□□□□□ -0.23
NUP88-201ENST00000225696 H0YGN5 161 aa13.63□□□□□ -0.23
NUP88-201ENST00000225696 TM4SF1P30408 202 aa13.63□□□□□ -0.23
NUP88-201ENST00000225696 HSD17B3P37058 310 aa13.63□□□□□ -0.23
NUP88-201ENST00000225696 EIF6P56537 245 aaKnown RBP13.63□□□□□ -0.23
NUP88-201ENST00000225696 PTK2Q05397 1052 aa13.63□□□□□ -0.23
NUP88-201ENST00000225696 IFT88Q13099 833 aa13.63□□□□□ -0.23
NUP88-201ENST00000225696 DDB1Q16531 1140 aa13.63□□□□□ -0.23
NUP88-201ENST00000225696 SLC10A5Q5PT55 438 aa13.63□□□□□ -0.23
NUP88-201ENST00000225696 SWT1Q5T5J6 900 aaKnown RBP13.63□□□□□ -0.23
NUP88-201ENST00000225696 EMC10Q5UCC4 262 aa13.63□□□□□ -0.23
NUP88-201ENST00000225696 B4GALNT4Q76KP1 1039 aa13.63□□□□□ -0.23
NUP88-201ENST00000225696 TRIM59Q8IWR1 403 aa13.63□□□□□ -0.23
NUP88-201ENST00000225696 LZTS2Q9BRK4 669 aa13.63□□□□□ -0.23
NUP88-201ENST00000225696 YY1AP1Q9H869 796 aa13.63□□□□□ -0.23
NUP88-201ENST00000225696 TSKSQ9UJT2 592 aa13.63□□□□□ -0.23
NUP88-201ENST00000225696 NFS1Q9Y697 457 aa13.63□□□□□ -0.23
NUP88-201ENST00000225696 E7EVH7 732 aa13.62□□□□□ -0.23
NUP88-201ENST00000225696 FGFR1OPO95684 399 aaKnown RBP13.62□□□□□ -0.23
NUP88-201ENST00000225696 ITGA4P13612 1032 aa13.62□□□□□ -0.23
NUP88-201ENST00000225696 TMOD1P28289 359 aa13.62□□□□□ -0.23
NUP88-201ENST00000225696 HSPA9P38646 679 aaKnown RBP13.62□□□□□ -0.23
NUP88-201ENST00000225696 TNNI2P48788 182 aa13.62□□□□□ -0.23
NUP88-201ENST00000225696 KLHL30Q0D2K2 578 aa13.62□□□□□ -0.23
NUP88-201ENST00000225696 HLTFQ14527 1009 aaKnown RBP eCLIP13.62□□□□□ -0.23
NUP88-201ENST00000225696 RNF187Q5TA31 235 aaPredicted RBP13.62□□□□□ -0.23
NUP88-201ENST00000225696 KRT79Q5XKE5 535 aa13.62□□□□□ -0.23
NUP88-201ENST00000225696 ZNF571Q7Z3V5 609 aaPredicted RBP13.62□□□□□ -0.23
NUP88-201ENST00000225696 GPATCH11Q8N954 259 aa13.62□□□□□ -0.23
NUP88-201ENST00000225696 CEP89Q96ST8 783 aa13.62□□□□□ -0.23
NUP88-201ENST00000225696 TSG101Q99816 390 aa13.62□□□□□ -0.23
NUP88-201ENST00000225696 EDEM3Q9BZQ6 932 aa13.62□□□□□ -0.23
NUP88-201ENST00000225696 GANQ9H2C0 597 aa13.62□□□□□ -0.23
NUP88-201ENST00000225696 RIC8AQ9NPQ8 531 aa13.62□□□□□ -0.23
NUP88-201ENST00000225696 PANK4Q9NVE7 773 aa13.62□□□□□ -0.23
NUP88-201ENST00000225696 RNF14Q9UBS8 474 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms