RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 MMS22LQ6ZRQ5 1243 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 ICA1LQ8NDH6 482 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 DEPTORQ8TB45 409 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 VIPAS39Q9H9C1 493 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 RWDD2AQ9UIY3 292 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 PAPOLAP51003 745 aaKnown RBP6.54□□□□□ -1.36
VPS13D-201ENST00000011700 MORC3Q14149 939 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 EXOC3L4Q17RC7 722 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 ACAD11Q709F0 780 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 TBC1D19Q8N5T2 526 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 ANKRD36BP1Q96IX9 119 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 NACC1Q96RE7 527 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 ING2Q9H160 280 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 PDE1BQ01064 536 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 NUDT18Q6ZVK8 323 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 MRPL50Q8N5N7 158 aaKnown RBP6.54□□□□□ -1.36
VPS13D-201ENST00000011700 NEUROG2Q9H2A3 272 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 C19orf44Q9H6X5 657 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 CPSF3Q9UKF6 684 aaKnown RBP6.54□□□□□ -1.36
VPS13D-201ENST00000011700 ZNF638Q14966 1978 aaKnown RBP6.54□□□□□ -1.36
VPS13D-201ENST00000011700 KIAA0391O15091 583 aaKnown RBP6.54□□□□□ -1.36
VPS13D-201ENST00000011700 RPLP2P05387 115 aaKnown RBP6.54□□□□□ -1.36
VPS13D-201ENST00000011700 ATP5JP18859 108 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 HDAC11Q96DB2 347 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 GPR108Q9NPR9 543 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 SESN1Q9Y6P5 492 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 KDRP35968 1356 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 KDM1AO60341 852 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 USP14P54578 494 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 EIF6P56537 245 aaKnown RBP6.54□□□□□ -1.36
VPS13D-201ENST00000011700 EFL1Q7Z2Z2 1120 aaKnown RBP6.54□□□□□ -1.36
VPS13D-201ENST00000011700 RIBC1Q8N443 379 aaPredicted RBP6.54□□□□□ -1.36
VPS13D-201ENST00000011700 CMTM5Q96DZ9 223 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 EHD2Q9NZN4 543 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 ANO9A1A5B4 782 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 CYP2C19P33261 490 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 NR5A1Q13285 461 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 SNX1Q13596 522 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 ELF2Q15723 593 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 OLFML2BQ68BL8 750 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 TADA2BQ86TJ2 420 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 SEL1LQ9UBV2 794 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 SNX5Q9Y5X3 404 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 ARHGEF40Q8TER5 1519 aa6.54□□□□□ -1.36
VPS13D-201ENST00000011700 ERVV-2B6SEH9 535 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 GFPT2O94808 682 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 PMLP29590 882 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 LIG4P49917 911 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 DDB1Q16531 1140 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 BANK1Q8NDB2 785 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 CARNS1A5YM72 827 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 HSPA1AP0DMV8 641 aaKnown RBP6.53□□□□□ -1.36
VPS13D-201ENST00000011700 HSPA1BP0DMV9 641 aaKnown RBP6.53□□□□□ -1.36
VPS13D-201ENST00000011700 PAX3P23760 479 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 S100A5P33763 92 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 AP3M2P53677 418 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 STX17P56962 302 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 ZC3H6P61129 1189 aaKnown RBP6.53□□□□□ -1.36
VPS13D-201ENST00000011700 WASHC5Q12768 1159 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 TRIM69Q86WT6 500 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 SETBP1Q9Y6X0 1596 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 TNKSO95271 1327 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 PSMC2P35998 433 aaKnown RBP6.53□□□□□ -1.36
VPS13D-201ENST00000011700 PSMD6Q15008 389 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 DZIP3Q86Y13 1208 aaKnown RBP6.53□□□□□ -1.36
VPS13D-201ENST00000011700 TCP11Q8WWU5 503 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 KRCC1Q9NPI7 259 aaPredicted RBP6.53□□□□□ -1.36
VPS13D-201ENST00000011700 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.53□□□□□ -1.362e-6■■■□□ 15.1
VPS13D-201ENST00000011700 MAGI2Q86UL8 1455 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 KCNK3O14649 394 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 CTNND1O60716 968 aaKnown RBP6.53□□□□□ -1.36
VPS13D-201ENST00000011700 H2AFYO75367 372 aaKnown RBP6.53□□□□□ -1.36
VPS13D-201ENST00000011700 CNGA2Q16280 664 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 ELOA2Q8IYF1 753 aaPredicted RBP6.53□□□□□ -1.36
VPS13D-201ENST00000011700 SLC7A3Q8WY07 619 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 OLFM1Q99784 485 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 TIPINQ9BVW5 301 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 TRIM54Q9BYV2 358 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 FDX1P10109 184 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 HAND2P61296 217 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 ZNF579Q8NAF0 562 aaKnown RBP6.53□□□□□ -1.36
VPS13D-201ENST00000011700 GGA1Q9UJY5 639 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 NIP7Q9Y221 180 aaKnown RBP eCLIP6.53□□□□□ -1.36
VPS13D-201ENST00000011700 PTPRKQ15262 1439 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 SMIM23A6NLE4 172 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 KRT7P08729 469 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 OR52Z1P0C646 297 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 MAN2A1Q16706 1144 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 NXNQ6DKJ4 435 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 KLHL29Q96CT2 875 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 NSMCE4AQ9NXX6 385 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 TPX2Q9ULW0 747 aaKnown RBP6.53□□□□□ -1.36
VPS13D-201ENST00000011700 PPP6R3Q5H9R7 873 aaPredicted RBP6.53□□□□□ -1.36
VPS13D-201ENST00000011700 MIGA2Q7L4E1 593 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 ACRBPQ8NEB7 543 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 APOBEC2Q9Y235 224 aaKnown RBP6.53□□□□□ -1.36
VPS13D-201ENST00000011700 FAM95CA0A1B0GW59 222 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 GPAA1O43292 621 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 TMEM191BP0C7N4 346 aa6.53□□□□□ -1.36
VPS13D-201ENST00000011700 SCG2P13521 617 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms