RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 RNASEH1O60930 286 aaKnown RBP5.5□□□□□ -1.53
SCN1A-218ENST00000640036 XYLBO75191 536 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 CRCPO75575 148 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 KLRC2P26717 231 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 OR1G1P47890 313 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 SOX10P56693 466 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 RNF187Q5TA31 235 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-218ENST00000640036 CEP128Q6ZU80 1094 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 C10orf67Q8IYJ2 551 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 TDRD7Q8NHU6 1098 aaKnown RBP5.5□□□□□ -1.53
SCN1A-218ENST00000640036 RAB3IPQ96QF0 476 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-218ENST00000640036 SRPK1Q96SB4 655 aaKnown RBP5.5□□□□□ -1.53
SCN1A-218ENST00000640036 RASAL2Q9UJF2 1139 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 ANAPC5Q9UJX4 755 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 RILPL1Q5EBL4 403 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 HHIPL2Q6UWX4 724 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 EFHBQ8N7U6 833 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 NEK11Q8NG66 645 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 TAF1DQ9H5J8 278 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-218ENST00000640036 PRR36Q9H6K5 1346 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 RSPH10B2B2RC85 870 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 K7ELQ4 463 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-218ENST00000640036 RSPH10BP0C881 870 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 GCFC2P16383 781 aaKnown RBP5.5□□□□□ -1.53
SCN1A-218ENST00000640036 PDE1AP54750 535 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 GEN1Q17RS7 908 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 SH2D4BQ5SQS7 431 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 TSHZ3Q63HK5 1081 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 ZNF654Q8IZM8 581 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 LMBR1Q8WVP7 490 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 CARD14Q9BXL6 1004 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 DBR1Q9UK59 544 aaKnown RBP5.5□□□□□ -1.53
SCN1A-218ENST00000640036 COL4A3BPQ9Y5P4 624 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 KNTC1P50748 2209 aa5.5□□□□□ -1.53
SCN1A-218ENST00000640036 ZC3H4Q9UPT8 1303 aaKnown RBP5.49□□□□□ -1.53
SCN1A-218ENST00000640036 C17orf102A2RUQ5 167 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 N4BP3O15049 544 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 TFAMQ00059 246 aaKnown RBP5.49□□□□□ -1.53
SCN1A-218ENST00000640036 KYAT1Q16773 422 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 EPHA10Q5JZY3 1008 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 SLC10A5Q5PT55 438 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 SIX6OS1Q8N1H7 587 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 MCPH1Q8NEM0 835 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 TRPC7Q9HCX4 862 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 C1orf112Q9NSG2 853 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 KAT6AQ92794 2004 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 MROH7-TTC4A0A0A0MT08 1334 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 SRGNP10124 158 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 RALAP11233 206 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 ATP2A2P16615 1042 aaKnown RBP5.49□□□□□ -1.53
SCN1A-218ENST00000640036 ZNF174Q15697 407 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 LRRC24Q50LG9 513 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 G2E3Q7L622 706 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 SNX19Q92543 992 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 SYMPKQ92797 1274 aaKnown RBP5.49□□□□□ -1.53
SCN1A-218ENST00000640036 TTC14Q96N46 770 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-218ENST00000640036 PRDM15P57071 1507 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-218ENST00000640036 DIP2CQ9Y2E4 1556 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 IKBKBO14920 756 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 NKRFO15226 690 aaKnown RBP eCLIP5.49□□□□□ -1.53
SCN1A-218ENST00000640036 HMGCRP04035 888 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 ATP5JP18859 108 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 PPARGP37231 505 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-218ENST00000640036 RCSD1Q6JBY9 416 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 GDAP1Q8TB36 358 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 TSC1Q92574 1164 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 PLIN2Q99541 437 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 TBC1D22BQ9NU19 505 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 MAGED2Q9UNF1 606 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-218ENST00000640036 MCM4P33991 863 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 PPP2R3AQ06190 1150 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 PPATQ06203 517 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 RAB30Q15771 203 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 NAA15Q9BXJ9 866 aaKnown RBP5.49□□□□□ -1.53
SCN1A-218ENST00000640036 USP26Q9BXU7 913 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 IQCGQ9H095 443 aaKnown RBP5.49□□□□□ -1.53
SCN1A-218ENST00000640036 UBN1Q9NPG3 1134 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 PCDHB8Q9UN66 801 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 PIN4Q9Y237 131 aaKnown RBP5.49□□□□□ -1.53
SCN1A-218ENST00000640036 SYNGAP1Q96PV0 1343 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 ADM5C9JUS6 153 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 F5H6K3 240 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 hCG_1984214I3L0E3 225 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 KRT76Q01546 638 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 KLRC3Q07444 240 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 PAN2Q504Q3 1202 aaKnown RBP5.49□□□□□ -1.53
SCN1A-218ENST00000640036 SLFN12LQ6IEE8 588 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 TTC23LQ6PF05 361 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 SRGAP1Q7Z6B7 1085 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 DHX58Q96C10 678 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 TRIM62Q9BVG3 475 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 IFIH1Q9BYX4 1025 aaKnown RBP5.49□□□□□ -1.53
SCN1A-218ENST00000640036 TMEM39BQ9GZU3 492 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 ZNF302Q9NR11 478 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 FAM8A1Q9UBU6 413 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 ANAPC4Q9UJX5 808 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 GMNNO75496 209 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 DDAH1O94760 285 aa5.49□□□□□ -1.53
SCN1A-218ENST00000640036 CTNNB1P35222 781 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms