RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 RSPH10BP0C881 870 aa17.18■□□□□ 0.34
CLN3-249ENST00000636685 ZNF286BP0CG31 522 aa17.18■□□□□ 0.34
CLN3-249ENST00000636685 THPOP40225 353 aa17.18■□□□□ 0.34
CLN3-249ENST00000636685 SIGLEC14Q08ET2 396 aa17.18■□□□□ 0.34
CLN3-249ENST00000636685 DGKDQ16760 1214 aa17.18■□□□□ 0.34
CLN3-249ENST00000636685 KIAA0753Q2KHM9 967 aa17.18■□□□□ 0.34
CLN3-249ENST00000636685 SYDE2Q5VT97 1194 aa17.18■□□□□ 0.34
CLN3-249ENST00000636685 SEPT14Q6ZU15 432 aa17.18■□□□□ 0.34
CLN3-249ENST00000636685 DNERQ8NFT8 737 aa17.18■□□□□ 0.34
CLN3-249ENST00000636685 OSBPL7Q9BZF2 842 aa17.18■□□□□ 0.34
CLN3-249ENST00000636685 IL17RBQ9NRM6 502 aa17.18■□□□□ 0.34
CLN3-249ENST00000636685 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.17■□□□□ 0.34
CLN3-249ENST00000636685 PROB1E7EW31 1015 aa17.17■□□□□ 0.34
CLN3-249ENST00000636685 NDUFV1P49821 464 aa17.17■□□□□ 0.34
CLN3-249ENST00000636685 ADAM15Q13444 863 aa17.17■□□□□ 0.34
CLN3-249ENST00000636685 IFNL3Q8IZI9 196 aa17.17■□□□□ 0.34
CLN3-249ENST00000636685 APPBP2Q92624 585 aa17.17■□□□□ 0.34
CLN3-249ENST00000636685 ASIC4Q96FT7 647 aa17.17■□□□□ 0.34
CLN3-249ENST00000636685 MSLNLQ96KJ4 702 aa17.17■□□□□ 0.34
CLN3-249ENST00000636685 FSD1Q9BTV5 496 aa17.17■□□□□ 0.34
CLN3-249ENST00000636685 IFIH1Q9BYX4 1025 aaKnown RBP17.17■□□□□ 0.34
CLN3-249ENST00000636685 LMAN2LQ9H0V9 348 aa17.17■□□□□ 0.34
CLN3-249ENST00000636685 GVINP1Q7Z2Y8 2422 aa17.17■□□□□ 0.34
CLN3-249ENST00000636685 PRR23AA6NEV1 266 aa17.16■□□□□ 0.34
CLN3-249ENST00000636685 C5orf67F2Z3F1 127 aa17.16■□□□□ 0.34
CLN3-249ENST00000636685 M0R2C6 588 aa17.16■□□□□ 0.34
CLN3-249ENST00000636685 HAS3O00219 553 aa17.16■□□□□ 0.34
CLN3-249ENST00000636685 EYA4O95677 639 aa17.16■□□□□ 0.34
CLN3-249ENST00000636685 CBX2Q14781 532 aaPredicted RBP17.16■□□□□ 0.34
CLN3-249ENST00000636685 BTNL9Q6UXG8 535 aa17.16■□□□□ 0.34
CLN3-249ENST00000636685 FIBCD1Q8N539 461 aa17.16■□□□□ 0.34
CLN3-249ENST00000636685 DCAF4Q8WV16 495 aa17.16■□□□□ 0.34
CLN3-249ENST00000636685 SEPT8Q92599 483 aa17.16■□□□□ 0.34
CLN3-249ENST00000636685 C11orf84Q9BUA3 381 aaPredicted RBP17.16■□□□□ 0.34
CLN3-249ENST00000636685 KATNAL1Q9BW62 490 aa17.16■□□□□ 0.34
CLN3-249ENST00000636685 INCENPQ9NQS7 918 aa17.16■□□□□ 0.34
CLN3-249ENST00000636685 TRPC6Q9Y210 931 aa17.16■□□□□ 0.34
CLN3-249ENST00000636685 VPS13AQ96RL7 3174 aa17.16■□□□□ 0.34
CLN3-249ENST00000636685 B4DLN1 442 aa17.15■□□□□ 0.34
CLN3-249ENST00000636685 F2P00734 622 aa17.15■□□□□ 0.34
CLN3-249ENST00000636685 RB1P06400 928 aa17.15■□□□□ 0.34
CLN3-249ENST00000636685 LINC00271P0C7V0 271 aa17.15■□□□□ 0.34
CLN3-249ENST00000636685 GNAT2P19087 354 aa17.15■□□□□ 0.34
CLN3-249ENST00000636685 BMPR1AP36894 532 aa17.15■□□□□ 0.34
CLN3-249ENST00000636685 ID4P47928 161 aa17.15■□□□□ 0.34
CLN3-249ENST00000636685 MRPL12P52815 198 aaKnown RBP17.15■□□□□ 0.34
CLN3-249ENST00000636685 RRP1P56182 461 aaKnown RBP17.15■□□□□ 0.34
CLN3-249ENST00000636685 DHX37Q8IY37 1157 aaKnown RBP17.15■□□□□ 0.34
CLN3-249ENST00000636685 IL17RAQ96F46 866 aa17.15■□□□□ 0.34
CLN3-249ENST00000636685 GPCPD1Q9NPB8 672 aa17.15■□□□□ 0.34
CLN3-249ENST00000636685 FRMPD2Q68DX3 1309 aaPredicted RBP17.15■□□□□ 0.34
CLN3-249ENST00000636685 PATL2C9JE40 543 aaKnown RBP17.14■□□□□ 0.33
CLN3-249ENST00000636685 RAB11FIP3O75154 756 aa17.14■□□□□ 0.33
CLN3-249ENST00000636685 PPARAQ07869 468 aa17.14■□□□□ 0.33
CLN3-249ENST00000636685 PPP4R3BQ5MIZ7 849 aa17.14■□□□□ 0.33
CLN3-249ENST00000636685 SERINC5Q86VE9 423 aa17.14■□□□□ 0.33
CLN3-249ENST00000636685 CLEC1BQ9P126 229 aa17.14■□□□□ 0.33
CLN3-249ENST00000636685 TSPY2A6NKD2 308 aa17.13■□□□□ 0.33
CLN3-249ENST00000636685 RNF113AO15541 343 aaKnown RBP17.13■□□□□ 0.33
CLN3-249ENST00000636685 KDM4AO75164 1064 aa17.13■□□□□ 0.33
CLN3-249ENST00000636685 RGS20O76081 388 aa17.13■□□□□ 0.33
CLN3-249ENST00000636685 PDGFBP01127 241 aaPredicted RBP17.13■□□□□ 0.33
CLN3-249ENST00000636685 SLC3A2P08195 630 aaKnown RBP17.13■□□□□ 0.33
CLN3-249ENST00000636685 CAMK1Q14012 370 aa17.13■□□□□ 0.33
CLN3-249ENST00000636685 SIRT2Q8IXJ6 389 aa17.13■□□□□ 0.33
CLN3-249ENST00000636685 SMRP1Q8NCR6 262 aa17.13■□□□□ 0.33
CLN3-249ENST00000636685 RPGRIP1Q96KN7 1286 aa17.13■□□□□ 0.33
CLN3-249ENST00000636685 DDX41Q9UJV9 622 aaKnown RBP17.13■□□□□ 0.33
CLN3-249ENST00000636685 MMP1P03956 469 aa17.12■□□□□ 0.33
CLN3-249ENST00000636685 CTSHP09668 335 aa17.12■□□□□ 0.33
CLN3-249ENST00000636685 ADGRD2Q7Z7M1 963 aa17.12■□□□□ 0.33
CLN3-249ENST00000636685 KBTBD3Q8NAB2 608 aa17.12■□□□□ 0.33
CLN3-249ENST00000636685 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.12■□□□□ 0.33
CLN3-249ENST00000636685 USP15Q9Y4E8 981 aaPredicted RBP17.12■□□□□ 0.33
CLN3-249ENST00000636685 KIAA1671Q9BY89 1806 aa17.12■□□□□ 0.33
CLN3-249ENST00000636685 GALR2O43603 387 aaPredicted RBP17.11■□□□□ 0.33
CLN3-249ENST00000636685 NBL1P41271 181 aa17.11■□□□□ 0.33
CLN3-249ENST00000636685 CTDSPL2Q05D32 466 aa17.11■□□□□ 0.33
CLN3-249ENST00000636685 COASYQ13057 564 aa17.11■□□□□ 0.33
CLN3-249ENST00000636685 PPTC7Q8NI37 304 aa17.11■□□□□ 0.33
CLN3-249ENST00000636685 PANK1Q8TE04 598 aa17.11■□□□□ 0.33
CLN3-249ENST00000636685 TBC1D5Q92609 795 aa17.11■□□□□ 0.33
CLN3-249ENST00000636685 EMID1Q96A84 441 aaPredicted RBP17.11■□□□□ 0.33
CLN3-249ENST00000636685 TAAR1Q96RJ0 339 aa17.11■□□□□ 0.33
CLN3-249ENST00000636685 NACAP1Q9BZK3 213 aa17.11■□□□□ 0.33
CLN3-249ENST00000636685 NAPBQ9H115 298 aa17.11■□□□□ 0.33
CLN3-249ENST00000636685 RWDD3Q9Y3V2 267 aa17.11■□□□□ 0.33
CLN3-249ENST00000636685 MYO10Q9HD67 2058 aa17.11■□□□□ 0.33
CLN3-249ENST00000636685 SORBS3O60504 671 aa17.1■□□□□ 0.33
CLN3-249ENST00000636685 HMMRO75330 724 aa17.1■□□□□ 0.33
CLN3-249ENST00000636685 DNAJB1P25685 340 aa17.1■□□□□ 0.33
CLN3-249ENST00000636685 NOVP48745 357 aa17.1■□□□□ 0.33
CLN3-249ENST00000636685 LAMC2Q13753 1193 aa17.1■□□□□ 0.33
CLN3-249ENST00000636685 USH1GQ495M9 461 aa17.1■□□□□ 0.33
CLN3-249ENST00000636685 CLP1Q92989 425 aaKnown RBP17.1■□□□□ 0.33
CLN3-249ENST00000636685 ATP6V0A1Q93050 837 aa17.1■□□□□ 0.33
CLN3-249ENST00000636685 PHF7Q9BWX1 381 aaPredicted RBP17.1■□□□□ 0.33
CLN3-249ENST00000636685 COL20A1Q9P218 1284 aa17.1■□□□□ 0.33
CLN3-249ENST00000636685 BARX2Q9UMQ3 279 aaPredicted RBP17.1■□□□□ 0.33
CLN3-249ENST00000636685 ADGRA3Q8IWK6 1321 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms