RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 PABPC4Q13310 644 aaKnown RBP eCLIP11.83□□□□□ -0.522e-20■■■■■ 62.1
CUX1-221ENST00000622516 DGKZQ13574 1117 aa11.83□□□□□ -0.52
CUX1-221ENST00000622516 CENPPQ6IPU0 288 aa11.83□□□□□ -0.52
CUX1-221ENST00000622516 WDR59Q6PJI9 974 aa11.83□□□□□ -0.52
CUX1-221ENST00000622516 CYP26C1Q6V0L0 522 aa11.83□□□□□ -0.52
CUX1-221ENST00000622516 SUPT20HQ8NEM7 779 aa11.83□□□□□ -0.52
CUX1-221ENST00000622516 NAA15Q9BXJ9 866 aaKnown RBP11.83□□□□□ -0.52
CUX1-221ENST00000622516 PRDM10Q9NQV6 1147 aa11.83□□□□□ -0.52
CUX1-221ENST00000622516 PANK4Q9NVE7 773 aa11.83□□□□□ -0.52
CUX1-221ENST00000622516 EPHB6O15197 1021 aa11.82□□□□□ -0.52
CUX1-221ENST00000622516 PLA2G4BP0C869 781 aa11.82□□□□□ -0.52
CUX1-221ENST00000622516 DNM2P50570 870 aa11.82□□□□□ -0.52
CUX1-221ENST00000622516 COASYQ13057 564 aa11.82□□□□□ -0.52
CUX1-221ENST00000622516 GPBP1Q86WP2 473 aa11.82□□□□□ -0.52
CUX1-221ENST00000622516 CATSPER3Q86XQ3 398 aa11.82□□□□□ -0.52
CUX1-221ENST00000622516 TMTC1Q8IUR5 882 aa11.82□□□□□ -0.52
CUX1-221ENST00000622516 GMCL1P1Q8NEA9 526 aa11.82□□□□□ -0.52
CUX1-221ENST00000622516 OR8K1Q8NGG5 319 aa11.82□□□□□ -0.52
CUX1-221ENST00000622516 ZBTB9Q96C00 473 aa11.82□□□□□ -0.52
CUX1-221ENST00000622516 GMCL1Q96IK5 515 aa11.82□□□□□ -0.52
CUX1-221ENST00000622516 KCNMB3Q9NPA1 279 aa11.82□□□□□ -0.52
CUX1-221ENST00000622516 ARFGEF1Q9Y6D6 1849 aa11.82□□□□□ -0.52
CUX1-221ENST00000622516 GOLGA6L9A6NEM1 432 aa11.82□□□□□ -0.52
CUX1-221ENST00000622516 ZBTB7AO95365 584 aa11.82□□□□□ -0.52
CUX1-221ENST00000622516 EGFRP00533 1210 aa11.82□□□□□ -0.52
CUX1-221ENST00000622516 KRT18P05783 430 aaKnown RBP11.82□□□□□ -0.52
CUX1-221ENST00000622516 ZNF76P36508 570 aa11.82□□□□□ -0.52
CUX1-221ENST00000622516 STAT2P52630 851 aa11.82□□□□□ -0.52
CUX1-221ENST00000622516 HERC4Q5GLZ8 1057 aaPredicted RBP11.82□□□□□ -0.52
CUX1-221ENST00000622516 GUCA1BQ9UMX6 200 aa11.82□□□□□ -0.52
CUX1-221ENST00000622516 REXO2Q9Y3B8 237 aaKnown RBP11.82□□□□□ -0.52
CUX1-221ENST00000622516 CHMP2AO43633 222 aa11.82□□□□□ -0.52
CUX1-221ENST00000622516 PLEKP08567 350 aaPredicted RBP11.82□□□□□ -0.52
CUX1-221ENST00000622516 GCFC2P16383 781 aaKnown RBP11.82□□□□□ -0.52
CUX1-221ENST00000622516 USP11P51784 963 aa11.82□□□□□ -0.52
CUX1-221ENST00000622516 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.82□□□□□ -0.526e-12■■■■■ 49.8
CUX1-221ENST00000622516 SLC35F6Q8N357 371 aa11.82□□□□□ -0.52
CUX1-221ENST00000622516 UBXN4Q92575 508 aa11.82□□□□□ -0.52
CUX1-221ENST00000622516 LENG9Q96B70 501 aa11.82□□□□□ -0.52
CUX1-221ENST00000622516 TANGO6Q9C0B7 1094 aa11.82□□□□□ -0.52
CUX1-221ENST00000622516 RGL1Q9NZL6 768 aa11.82□□□□□ -0.52
CUX1-221ENST00000622516 PUF60Q9UHX1 559 aaKnown RBP11.82□□□□□ -0.52
CUX1-221ENST00000622516 EPN1Q9Y6I3 576 aaPredicted RBP11.82□□□□□ -0.52
CUX1-221ENST00000622516 ATRNL1Q5VV63 1379 aa11.81□□□□□ -0.52
CUX1-221ENST00000622516 PVALEFA0A1B0GWK0 134 aa11.81□□□□□ -0.52
CUX1-221ENST00000622516 KIF5CO60282 957 aa11.81□□□□□ -0.52
CUX1-221ENST00000622516 VIL1P09327 827 aaKnown RBP11.81□□□□□ -0.52
CUX1-221ENST00000622516 MAP3K9P80192 1104 aa11.81□□□□□ -0.52
CUX1-221ENST00000622516 CYP27A1Q02318 531 aa11.81□□□□□ -0.52
CUX1-221ENST00000622516 ETNPPLQ8TBG4 499 aa11.81□□□□□ -0.52
CUX1-221ENST00000622516 CCDC51Q96ER9 411 aa11.81□□□□□ -0.52
CUX1-221ENST00000622516 GMLQ99445 158 aa11.81□□□□□ -0.52
CUX1-221ENST00000622516 MMRN2Q9H8L6 949 aa11.81□□□□□ -0.52
CUX1-221ENST00000622516 ZBTB21Q9ULJ3 1066 aa11.81□□□□□ -0.52
CUX1-221ENST00000622516 CAPN11Q9UMQ6 739 aa11.81□□□□□ -0.52
CUX1-221ENST00000622516 CNTNAP1P78357 1384 aa11.81□□□□□ -0.52
CUX1-221ENST00000622516 TNS1Q9HBL0 1735 aaKnown RBP11.81□□□□□ -0.52
CUX1-221ENST00000622516 TRAF5O00463 557 aa11.81□□□□□ -0.52
CUX1-221ENST00000622516 ZBTB39O15060 712 aa11.81□□□□□ -0.52
CUX1-221ENST00000622516 MSH4O15457 936 aa11.81□□□□□ -0.52
CUX1-221ENST00000622516 NPM3O75607 178 aaKnown RBP11.81□□□□□ -0.52
CUX1-221ENST00000622516 NDUFA10O95299 355 aa11.81□□□□□ -0.52
CUX1-221ENST00000622516 APBA1Q02410 837 aa11.81□□□□□ -0.52
CUX1-221ENST00000622516 ARSHQ5FYA8 562 aa11.81□□□□□ -0.52
CUX1-221ENST00000622516 TEX35Q5T0J7 233 aa11.81□□□□□ -0.52
CUX1-221ENST00000622516 CRYGNQ8WXF5 182 aa11.81□□□□□ -0.52
CUX1-221ENST00000622516 CGNQ9P2M7 1197 aaKnown RBP11.81□□□□□ -0.52
CUX1-221ENST00000622516 SFI1A8K8P3 1242 aa11.8□□□□□ -0.52
CUX1-221ENST00000622516 EML1O00423 815 aa11.8□□□□□ -0.52
CUX1-221ENST00000622516 TUBB4AP04350 444 aa11.8□□□□□ -0.52
CUX1-221ENST00000622516 ARHGAP25P42331 645 aa11.8□□□□□ -0.52
CUX1-221ENST00000622516 CXCL9Q07325 125 aa11.8□□□□□ -0.52
CUX1-221ENST00000622516 SPIRE1Q08AE8 756 aa11.8□□□□□ -0.52
CUX1-221ENST00000622516 TSR1Q2NL82 804 aaKnown RBP11.8□□□□□ -0.52
CUX1-221ENST00000622516 FAM26FQ5R3K3 315 aa11.8□□□□□ -0.52
CUX1-221ENST00000622516 RTKN2Q8IZC4 609 aa11.8□□□□□ -0.52
CUX1-221ENST00000622516 MYOCDQ8IZQ8 938 aa11.8□□□□□ -0.52
CUX1-221ENST00000622516 GUF1Q8N442 669 aaKnown RBP11.8□□□□□ -0.52
CUX1-221ENST00000622516 SMCR8Q8TEV9 937 aaPredicted RBP11.8□□□□□ -0.52
CUX1-221ENST00000622516 FAM151AQ8WW52 585 aa11.8□□□□□ -0.52
CUX1-221ENST00000622516 ARHGEF10LQ9HCE6 1279 aa11.8□□□□□ -0.52
CUX1-221ENST00000622516 BMP2KQ9NSY1 1161 aaPredicted RBP11.8□□□□□ -0.52
CUX1-221ENST00000622516 HDAC9Q9UKV0 1011 aa11.8□□□□□ -0.52
CUX1-221ENST00000622516 MRFAP1Q9Y605 127 aa11.8□□□□□ -0.52
CUX1-221ENST00000622516 ZNF646O15015 1829 aaPredicted RBP11.8□□□□□ -0.52
CUX1-221ENST00000622516 A0A1W2PQC6 194 aa11.8□□□□□ -0.52
CUX1-221ENST00000622516 ENC1O14682 589 aa11.8□□□□□ -0.52
CUX1-221ENST00000622516 CYP11B2P19099 503 aa11.8□□□□□ -0.52
CUX1-221ENST00000622516 CASP5P51878 434 aa11.8□□□□□ -0.52
CUX1-221ENST00000622516 PPP2R3AQ06190 1150 aa11.8□□□□□ -0.52
CUX1-221ENST00000622516 TRIM14Q14142 442 aa11.8□□□□□ -0.52
CUX1-221ENST00000622516 KIF4BQ2VIQ3 1234 aa11.8□□□□□ -0.52
CUX1-221ENST00000622516 PIGOQ8TEQ8 1089 aa11.8□□□□□ -0.52
CUX1-221ENST00000622516 NOC3LQ8WTT2 800 aaKnown RBP11.8□□□□□ -0.52
CUX1-221ENST00000622516 CRACR2AQ9BSW2 395 aa11.8□□□□□ -0.52
CUX1-221ENST00000622516 NDST4Q9H3R1 872 aa11.8□□□□□ -0.52
CUX1-221ENST00000622516 HERC5Q9UII4 1024 aaKnown RBP11.8□□□□□ -0.52
CUX1-221ENST00000622516 DUSP10Q9Y6W6 482 aa11.8□□□□□ -0.52
CUX1-221ENST00000622516 RSPH10B2B2RC85 870 aa11.79□□□□□ -0.52
CUX1-221ENST00000622516 RSPH10BP0C881 870 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms