RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 LRRC42Q9Y546 428 aa8.66□□□□□ -1.02
VPS11-209ENST00000622309 SALL1Q9NSC2 1324 aa8.66□□□□□ -1.02
VPS11-209ENST00000622309 RPL13P26373 211 aaKnown RBP8.65□□□□□ -1.02
VPS11-209ENST00000622309 PDIA3P30101 505 aaKnown RBP8.65□□□□□ -1.02
VPS11-209ENST00000622309 GSTT1P30711 240 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 RAD23BP54727 409 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 MCCD1P59942 119 aaPredicted RBP8.65□□□□□ -1.02
VPS11-209ENST00000622309 PPP4CP60510 307 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 FXNQ16595 210 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 LRIG3Q6UXM1 1119 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 APTXQ7Z2E3 356 aaKnown RBP8.65□□□□□ -1.02
VPS11-209ENST00000622309 CABLES1Q8TDN4 633 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 LZICQ8WZA0 190 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 OCEL1Q9H607 264 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 TMOD4Q9NZQ9 345 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 ADAM22Q9P0K1 906 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 TBC1D7Q9P0N9 293 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 LUC7L2Q9Y383 392 aaKnown RBP8.65□□□□□ -1.02
VPS11-209ENST00000622309 OVOS2A0A0G2JMS6 1433 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 F8W031 263 aaPredicted RBP8.65□□□□□ -1.02
VPS11-209ENST00000622309 BOLA2-SMG1P6H3BVE0 249 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 CYP21A2P08686 494 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 PAEPP09466 180 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 FDPSP14324 419 aaKnown RBP8.65□□□□□ -1.02
VPS11-209ENST00000622309 CYP11B2P19099 503 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 CTNNA1P35221 906 aaKnown RBP8.65□□□□□ -1.02
VPS11-209ENST00000622309 KBTBD12Q3ZCT8 623 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 USPL1Q5W0Q7 1092 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 ZNF530Q6P9A1 599 aaPredicted RBP8.65□□□□□ -1.02
VPS11-209ENST00000622309 SESTD1Q86VW0 696 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 RAB11FIP4Q86YS3 637 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 KIF2BQ8N4N8 673 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 ZNF274Q96GC6 653 aaPredicted RBP8.65□□□□□ -1.02
VPS11-209ENST00000622309 ELAC2Q9BQ52 826 aaKnown RBP8.65□□□□□ -1.02
VPS11-209ENST00000622309 KCNMB3Q9NPA1 279 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 ABCF2Q9UG63 623 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 PRR12Q9ULL5 1215 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 HYOU1Q9Y4L1 999 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 GMEB1Q9Y692 573 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 SLIT2O94813 1529 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 MYH15Q9Y2K3 1946 aa8.65□□□□□ -1.02
VPS11-209ENST00000622309 GCP02774 474 aa8.65□□□□□ -1.03
VPS11-209ENST00000622309 CXCR5P32302 372 aa8.65□□□□□ -1.03
VPS11-209ENST00000622309 PABPC4Q13310 644 aaKnown RBP eCLIP8.65□□□□□ -1.031e-6■□□□□ 9.5
VPS11-209ENST00000622309 TMED1Q13445 227 aa8.65□□□□□ -1.03
VPS11-209ENST00000622309 SMCR8Q8TEV9 937 aaPredicted RBP8.65□□□□□ -1.03
VPS11-209ENST00000622309 XPO6Q96QU8 1125 aaKnown RBP8.65□□□□□ -1.03
VPS11-209ENST00000622309 MED15Q96RN5 788 aa8.65□□□□□ -1.03
VPS11-209ENST00000622309 SEZ6LQ9BYH1 1024 aa8.65□□□□□ -1.03
VPS11-209ENST00000622309 SLC7A5P2Q9GIP4 190 aa8.65□□□□□ -1.03
VPS11-209ENST00000622309 NSRP1Q9H0G5 558 aaKnown RBP8.65□□□□□ -1.03
VPS11-209ENST00000622309 CNOT10Q9H9A5 744 aaKnown RBP8.65□□□□□ -1.03
VPS11-209ENST00000622309 IP6K2Q9UHH9 426 aa8.65□□□□□ -1.03
VPS11-209ENST00000622309 AGAP1Q9UPQ3 857 aa8.65□□□□□ -1.03
VPS11-209ENST00000622309 PXDNQ92626 1479 aa8.65□□□□□ -1.03
VPS11-209ENST00000622309 GLI3P10071 1580 aa8.65□□□□□ -1.03
VPS11-209ENST00000622309 MED23Q9ULK4 1368 aa8.65□□□□□ -1.03
VPS11-209ENST00000622309 hCG_2014768A0A024R1R8 64 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 KIF28PB7ZC32 967 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 RNF225M0QZC1 329 aaPredicted RBP8.64□□□□□ -1.03
VPS11-209ENST00000622309 SEMA3EO15041 775 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 PRC1O43663 620 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 UBOX5O94941 541 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 GLI1P08151 1106 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 KRT16P08779 473 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 ZNF131P52739 623 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 MAGOHP61326 146 aaKnown RBP8.64□□□□□ -1.03
VPS11-209ENST00000622309 NCALDP61601 193 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 KIF23Q02241 960 aaPredicted RBP8.64□□□□□ -1.03
VPS11-209ENST00000622309 TEFQ10587 303 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 CBX3Q13185 183 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 TAF7Q15545 349 aaPredicted RBP8.64□□□□□ -1.03
VPS11-209ENST00000622309 ZNF394Q53GI3 561 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 SEPT12Q8IYM1 358 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 MAGOHBQ96A72 148 aaKnown RBP8.64□□□□□ -1.03
VPS11-209ENST00000622309 RAB17Q9H0T7 212 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 PLCB1Q9NQ66 1216 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 SMARCAL1Q9NZC9 954 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 SERTAD1Q9UHV2 236 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 PALM3A6NDB9 673 aaPredicted RBP8.64□□□□□ -1.03
VPS11-209ENST00000622309 POLR2DO15514 142 aaKnown RBP8.64□□□□□ -1.03
VPS11-209ENST00000622309 ASAP2O43150 1006 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 ZFXP17010 805 aaPredicted RBP8.64□□□□□ -1.03
VPS11-209ENST00000622309 SERPINB4P48594 390 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 INHBCP55103 352 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 MUM1Q2TAK8 710 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 KANK3Q6NY19 840 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 ZNF572Q7Z3I7 529 aaPredicted RBP8.64□□□□□ -1.03
VPS11-209ENST00000622309 SMC1BQ8NDV3 1235 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 OR2W6PQ8NHA6 318 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 IP6K1Q92551 441 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 LRRC45Q96CN5 670 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 LACRTQ9GZZ8 138 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 CCDC8Q9H0W5 538 aaPredicted RBP8.64□□□□□ -1.03
VPS11-209ENST00000622309 GDF3Q9NR23 364 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 GJB4Q9NTQ9 266 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 RBM12Q9NTZ6 932 aaKnown RBP8.64□□□□□ -1.03
VPS11-209ENST00000622309 CNOT8Q9UFF9 292 aaKnown RBP8.64□□□□□ -1.03
VPS11-209ENST00000622309 FAM237AA0A1B0GTK4 181 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 LRRC10BA6NIK2 292 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms