RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 SEC63Q9UGP8 760 aaKnown RBP13.78□□□□□ -0.2
UPF3B-204ENST00000619445 YBX2Q9Y2T7 364 aaKnown RBP13.78□□□□□ -0.2
UPF3B-204ENST00000619445 EMSYQ7Z589 1322 aa13.78□□□□□ -0.2
UPF3B-204ENST00000619445 TET1Q8NFU7 2136 aa13.78□□□□□ -0.2
UPF3B-204ENST00000619445 EYSQ5T1H1 3165 aa13.77□□□□□ -0.2
UPF3B-204ENST00000619445 TRANK1O15050 2925 aa13.77□□□□□ -0.2
UPF3B-204ENST00000619445 HAS3O00219 553 aa13.77□□□□□ -0.21
UPF3B-204ENST00000619445 GTPBP6O43824 516 aaPredicted RBP13.77□□□□□ -0.21
UPF3B-204ENST00000619445 GGPS1O95749 300 aa13.77□□□□□ -0.21
UPF3B-204ENST00000619445 CALM1P0DP23 149 aa13.77□□□□□ -0.21
UPF3B-204ENST00000619445 CALM2P0DP24 149 aa13.77□□□□□ -0.21
UPF3B-204ENST00000619445 CALM3P0DP25 149 aa13.77□□□□□ -0.21
UPF3B-204ENST00000619445 IGFBP4P22692 258 aa13.77□□□□□ -0.21
UPF3B-204ENST00000619445 HOXA13P31271 388 aaPredicted RBP13.77□□□□□ -0.21
UPF3B-204ENST00000619445 MCM5P33992 734 aa13.77□□□□□ -0.21
UPF3B-204ENST00000619445 NEDD9Q14511 834 aa13.77□□□□□ -0.21
UPF3B-204ENST00000619445 KIAA0753Q2KHM9 967 aa13.77□□□□□ -0.21
UPF3B-204ENST00000619445 GDF6Q6KF10 455 aaPredicted RBP13.77□□□□□ -0.21
UPF3B-204ENST00000619445 CNKSR3Q6P9H4 555 aa13.77□□□□□ -0.21
UPF3B-204ENST00000619445 RRP36Q96EU6 259 aaKnown RBP13.77□□□□□ -0.21
UPF3B-204ENST00000619445 TMEM87BQ96K49 555 aa13.77□□□□□ -0.21
UPF3B-204ENST00000619445 MLXIPQ9HAP2 919 aa13.77□□□□□ -0.21
UPF3B-204ENST00000619445 FRMPD4Q14CM0 1322 aa13.77□□□□□ -0.21
UPF3B-204ENST00000619445 ABHD14A-ACY1A0A1B0GW23 586 aa13.76□□□□□ -0.21
UPF3B-204ENST00000619445 CXCL10P02778 98 aa13.76□□□□□ -0.21
UPF3B-204ENST00000619445 POU3F3P20264 500 aaPredicted RBP13.76□□□□□ -0.21
UPF3B-204ENST00000619445 RABGGTBP53611 331 aa13.76□□□□□ -0.21
UPF3B-204ENST00000619445 AAK1Q2M2I8 961 aa13.76□□□□□ -0.21
UPF3B-204ENST00000619445 FCHSD1Q86WN1 690 aa13.76□□□□□ -0.21
UPF3B-204ENST00000619445 HERC6Q8IVU3 1022 aa13.76□□□□□ -0.21
UPF3B-204ENST00000619445 TEX2Q8IWB9 1127 aa13.76□□□□□ -0.21
UPF3B-204ENST00000619445 MB21D2Q8IYB1 491 aaPredicted RBP13.76□□□□□ -0.21
UPF3B-204ENST00000619445 GIMAP8Q8ND71 665 aaPredicted RBP13.76□□□□□ -0.21
UPF3B-204ENST00000619445 IL27Q8NEV9 243 aa13.76□□□□□ -0.21
UPF3B-204ENST00000619445 IGDCC4Q8TDY8 1250 aa13.76□□□□□ -0.21
UPF3B-204ENST00000619445 USP26Q9BXU7 913 aa13.76□□□□□ -0.21
UPF3B-204ENST00000619445 HDAC6Q9UBN7 1215 aa13.76□□□□□ -0.21
UPF3B-204ENST00000619445 RBM8AQ9Y5S9 174 aaKnown RBP13.76□□□□□ -0.21
UPF3B-204ENST00000619445 CHD7Q9P2D1 2997 aa13.75□□□□□ -0.21
UPF3B-204ENST00000619445 PIK3CDO00329 1044 aa13.75□□□□□ -0.21
UPF3B-204ENST00000619445 NOP56O00567 594 aaKnown RBP13.75□□□□□ -0.21
UPF3B-204ENST00000619445 FIBPO43427 364 aa13.75□□□□□ -0.21
UPF3B-204ENST00000619445 CYTH3O43739 400 aa13.75□□□□□ -0.21
UPF3B-204ENST00000619445 CAND2O75155 1236 aa13.75□□□□□ -0.21
UPF3B-204ENST00000619445 RGS20O76081 388 aa13.75□□□□□ -0.21
UPF3B-204ENST00000619445 GNAT1P11488 350 aa13.75□□□□□ -0.21
UPF3B-204ENST00000619445 CKBP12277 381 aa13.75□□□□□ -0.21
UPF3B-204ENST00000619445 UBA1P22314 1058 aaKnown RBP13.75□□□□□ -0.21
UPF3B-204ENST00000619445 ICAM3P32942 547 aa13.75□□□□□ -0.21
UPF3B-204ENST00000619445 LIFRP42702 1097 aa13.75□□□□□ -0.21
UPF3B-204ENST00000619445 MRPS5P82675 430 aaKnown RBP13.75□□□□□ -0.21
UPF3B-204ENST00000619445 ZNF654Q8IZM8 581 aa13.75□□□□□ -0.21
UPF3B-204ENST00000619445 CDHR1Q96JP9 859 aa13.75□□□□□ -0.21
UPF3B-204ENST00000619445 INPP4AQ96PE3 977 aaPredicted RBP13.75□□□□□ -0.21
UPF3B-204ENST00000619445 ALG1Q9BT22 464 aa13.75□□□□□ -0.21
UPF3B-204ENST00000619445 BDP1A6H8Y1 2624 aa13.75□□□□□ -0.21
UPF3B-204ENST00000619445 KAT6AQ92794 2004 aa13.74□□□□□ -0.21
UPF3B-204ENST00000619445 CCDC69A6NI79 296 aa13.74□□□□□ -0.21
UPF3B-204ENST00000619445 TLL1O43897 1013 aa13.74□□□□□ -0.21
UPF3B-204ENST00000619445 CA3P07451 260 aa13.74□□□□□ -0.21
UPF3B-204ENST00000619445 ZNF286BP0CG31 522 aa13.74□□□□□ -0.21
UPF3B-204ENST00000619445 IKBKEQ14164 716 aa13.74□□□□□ -0.21
UPF3B-204ENST00000619445 ADGRE1Q14246 886 aa13.74□□□□□ -0.21
UPF3B-204ENST00000619445 HSDL1Q3SXM5 330 aa13.74□□□□□ -0.21
UPF3B-204ENST00000619445 RNF20Q5VTR2 975 aa13.74□□□□□ -0.21
UPF3B-204ENST00000619445 METTL7BQ6UX53 244 aa13.74□□□□□ -0.21
UPF3B-204ENST00000619445 NFXL1Q6ZNB6 911 aa13.74□□□□□ -0.21
UPF3B-204ENST00000619445 NLRX1Q86UT6 975 aa13.74□□□□□ -0.21
UPF3B-204ENST00000619445 USP38Q8NB14 1042 aa13.74□□□□□ -0.21
UPF3B-204ENST00000619445 SMARCC2Q8TAQ2 1214 aa13.74□□□□□ -0.21
UPF3B-204ENST00000619445 CTAGE1Q96RT6 745 aa13.74□□□□□ -0.21
UPF3B-204ENST00000619445 SENP7Q9BQF6 1050 aa13.74□□□□□ -0.21
UPF3B-204ENST00000619445 LY9Q9HBG7 655 aa13.74□□□□□ -0.21
UPF3B-204ENST00000619445 ZNF215Q9UL58 517 aaPredicted RBP13.74□□□□□ -0.21
UPF3B-204ENST00000619445 PRRC2BQ5JSZ5 2229 aaKnown RBP13.74□□□□□ -0.21
UPF3B-204ENST00000619445 VCANP13611 3396 aa13.74□□□□□ -0.21
UPF3B-204ENST00000619445 SPATA31C2B4DYI2 1134 aa13.73□□□□□ -0.21
UPF3B-204ENST00000619445 H3BRB1 525 aa13.73□□□□□ -0.21
UPF3B-204ENST00000619445 PRC1O43663 620 aa13.73□□□□□ -0.21
UPF3B-204ENST00000619445 ANTXR2P58335 489 aa13.73□□□□□ -0.21
UPF3B-204ENST00000619445 WDR5P61964 334 aaKnown RBP13.73□□□□□ -0.21
UPF3B-204ENST00000619445 SLC35G1Q2M3R5 365 aa13.73□□□□□ -0.21
UPF3B-204ENST00000619445 PCNX4Q63HM2 1172 aa13.73□□□□□ -0.21
UPF3B-204ENST00000619445 SERINC5Q86VE9 423 aa13.73□□□□□ -0.21
UPF3B-204ENST00000619445 IL31RAQ8NI17 732 aa13.73□□□□□ -0.21
UPF3B-204ENST00000619445 PPM1EQ8WY54 764 aa13.73□□□□□ -0.21
UPF3B-204ENST00000619445 DHX38Q92620 1227 aaKnown RBP13.73□□□□□ -0.21
UPF3B-204ENST00000619445 ASB2Q96Q27 587 aa13.73□□□□□ -0.21
UPF3B-204ENST00000619445 ZBED2Q9BTP6 218 aa13.73□□□□□ -0.21
UPF3B-204ENST00000619445 TUT1Q9H6E5 874 aaKnown RBP13.73□□□□□ -0.21
UPF3B-204ENST00000619445 C17orf102A2RUQ5 167 aa13.72□□□□□ -0.21
UPF3B-204ENST00000619445 MYOGP15173 224 aa13.72□□□□□ -0.21
UPF3B-204ENST00000619445 SYNE3Q6ZMZ3 975 aa13.72□□□□□ -0.21
UPF3B-204ENST00000619445 C16orf70Q9BSU1 422 aa13.72□□□□□ -0.21
UPF3B-204ENST00000619445 EHMT1Q9H9B1 1298 aa13.72□□□□□ -0.21
UPF3B-204ENST00000619445 SENP2Q9HC62 589 aa13.72□□□□□ -0.21
UPF3B-204ENST00000619445 LMCD1Q9NZU5 365 aa13.72□□□□□ -0.21
UPF3B-204ENST00000619445 SLC12A7Q9Y666 1083 aa13.72□□□□□ -0.21
UPF3B-204ENST00000619445 MAFGO15525 162 aa13.71□□□□□ -0.21
UPF3B-204ENST00000619445 LGR5O75473 907 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms