RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 POC1B-GALNT4F8VUJ3 575 aa15.25■□□□□ 0.03
CPSF1-212ENST00000616140 MFAP3P55082 362 aa15.25■□□□□ 0.03
CPSF1-212ENST00000616140 LRRC63Q05C16 580 aa15.25■□□□□ 0.03
CPSF1-212ENST00000616140 ADCY1Q08828 1119 aa15.25■□□□□ 0.03
CPSF1-212ENST00000616140 BSDC1Q9NW68 430 aaPredicted RBP15.25■□□□□ 0.03
CPSF1-212ENST00000616140 RIPOR2Q9Y4F9 1068 aa15.25■□□□□ 0.03
CPSF1-212ENST00000616140 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.25■□□□□ 0.03
CPSF1-212ENST00000616140 hCG_1984214I3L0E3 225 aa15.25■□□□□ 0.03
CPSF1-212ENST00000616140 GYS2P54840 703 aa15.25■□□□□ 0.03
CPSF1-212ENST00000616140 KRT81Q14533 505 aa15.25■□□□□ 0.03
CPSF1-212ENST00000616140 ZNF713Q8N859 430 aaPredicted RBP15.25■□□□□ 0.03
CPSF1-212ENST00000616140 ZNF579Q8NAF0 562 aaKnown RBP15.25■□□□□ 0.03
CPSF1-212ENST00000616140 BHMT2Q9H2M3 363 aa15.25■□□□□ 0.03
CPSF1-212ENST00000616140 BPIFB4P59827 614 aa15.24■□□□□ 0.03
CPSF1-212ENST00000616140 ZKSCAN8Q15776 578 aaPredicted RBP15.24■□□□□ 0.03
CPSF1-212ENST00000616140 ENAHQ8N8S7 591 aaPredicted RBP15.24■□□□□ 0.03
CPSF1-212ENST00000616140 GABPB2Q8TAK5 448 aaPredicted RBP15.24■□□□□ 0.03
CPSF1-212ENST00000616140 NACC1Q96RE7 527 aa15.24■□□□□ 0.03
CPSF1-212ENST00000616140 CTNND1O60716 968 aaKnown RBP15.24■□□□□ 0.03
CPSF1-212ENST00000616140 STAM2O75886 525 aa15.24■□□□□ 0.03
CPSF1-212ENST00000616140 TNNC2P02585 160 aa15.24■□□□□ 0.03
CPSF1-212ENST00000616140 CYP4F22Q6NT55 531 aa15.24■□□□□ 0.03
CPSF1-212ENST00000616140 CNKSR1Q969H4 720 aa15.24■□□□□ 0.03
CPSF1-212ENST00000616140 SCARF1Q14162 830 aa15.24■□□□□ 0.03
CPSF1-212ENST00000616140 CC2D2BQ6DHV5 1058 aa15.24■□□□□ 0.03
CPSF1-212ENST00000616140 STOX1Q6ZVD7 989 aa15.24■□□□□ 0.03
CPSF1-212ENST00000616140 LY9Q9HBG7 655 aa15.24■□□□□ 0.03
CPSF1-212ENST00000616140 TRPM1Q7Z4N2 1603 aa15.24■□□□□ 0.03
CPSF1-212ENST00000616140 TRIM37O94972 964 aa15.23■□□□□ 0.03
CPSF1-212ENST00000616140 SERPING1P05155 500 aa15.23■□□□□ 0.03
CPSF1-212ENST00000616140 NNTQ13423 1086 aa15.23■□□□□ 0.03
CPSF1-212ENST00000616140 NPHP4O75161 1426 aaPredicted RBP15.23■□□□□ 0.03
CPSF1-212ENST00000616140 NOL3O60936 208 aaKnown RBP15.23■□□□□ 0.03
CPSF1-212ENST00000616140 PSMD2Q13200 908 aa15.23■□□□□ 0.03
CPSF1-212ENST00000616140 SEPT14Q6ZU15 432 aa15.23■□□□□ 0.03
CPSF1-212ENST00000616140 GPR101Q96P66 508 aaPredicted RBP15.23■□□□□ 0.03
CPSF1-212ENST00000616140 PARVGQ9HBI0 331 aa15.23■□□□□ 0.03
CPSF1-212ENST00000616140 HESX1Q9UBX0 185 aa15.23■□□□□ 0.03
CPSF1-212ENST00000616140 STK36Q9NRP7 1315 aa15.23■□□□□ 0.03
CPSF1-212ENST00000616140 PPEF1O14829 653 aaPredicted RBP15.23■□□□□ 0.03
CPSF1-212ENST00000616140 MAPK4P31152 587 aa15.23■□□□□ 0.03
CPSF1-212ENST00000616140 SLCO1A2P46721 670 aa15.23■□□□□ 0.03
CPSF1-212ENST00000616140 SNX1Q13596 522 aa15.23■□□□□ 0.03
CPSF1-212ENST00000616140 TERF2Q15554 542 aa15.23■□□□□ 0.03
CPSF1-212ENST00000616140 BBOF1Q8ND07 529 aa15.23■□□□□ 0.03
CPSF1-212ENST00000616140 ABHD10Q9NUJ1 306 aa15.23■□□□□ 0.03
CPSF1-212ENST00000616140 ABCC3O15438 1527 aa15.23■□□□□ 0.03
CPSF1-212ENST00000616140 UBN2Q6ZU65 1347 aa15.23■□□□□ 0.03
CPSF1-212ENST00000616140 MAP3K4Q9Y6R4 1608 aa15.23■□□□□ 0.03
CPSF1-212ENST00000616140 LGALS16A8MUM7 142 aa15.23■□□□□ 0.03
CPSF1-212ENST00000616140 TEX33O43247 280 aa15.23■□□□□ 0.03
CPSF1-212ENST00000616140 SUN1O94901 812 aa15.23■□□□□ 0.03
CPSF1-212ENST00000616140 MXI1P50539 228 aa15.23■□□□□ 0.03
CPSF1-212ENST00000616140 SLC12A2P55011 1212 aa15.23■□□□□ 0.03
CPSF1-212ENST00000616140 AS3MTQ9HBK9 375 aa15.23■□□□□ 0.03
CPSF1-212ENST00000616140 PFDN4Q9NQP4 134 aa15.23■□□□□ 0.03
CPSF1-212ENST00000616140 CSADQ9Y600 493 aa15.23■□□□□ 0.03
CPSF1-212ENST00000616140 POTEMA6NI47 508 aa15.22■□□□□ 0.03
CPSF1-212ENST00000616140 NMT2O60551 498 aa15.22■□□□□ 0.03
CPSF1-212ENST00000616140 PRCPP42785 496 aa15.22■□□□□ 0.03
CPSF1-212ENST00000616140 SGO2Q562F6 1265 aa15.22■□□□□ 0.03
CPSF1-212ENST00000616140 DCAF15Q66K64 600 aa15.22■□□□□ 0.03
CPSF1-212ENST00000616140 SLC44A5Q8NCS7 719 aa15.22■□□□□ 0.03
CPSF1-212ENST00000616140 CCDC197Q8NCU1 140 aa15.22■□□□□ 0.03
CPSF1-212ENST00000616140 ATP6V0A1Q93050 837 aa15.22■□□□□ 0.03
CPSF1-212ENST00000616140 ADAM21Q9UKJ8 722 aa15.22■□□□□ 0.03
CPSF1-212ENST00000616140 RPAP1Q9BWH6 1393 aaPredicted RBP15.22■□□□□ 0.03
CPSF1-212ENST00000616140 FOXN1O15353 648 aa15.22■□□□□ 0.03
CPSF1-212ENST00000616140 SRGAP2O75044 1071 aa15.22■□□□□ 0.03
CPSF1-212ENST00000616140 PIK3CAP42336 1068 aa15.22■□□□□ 0.03
CPSF1-212ENST00000616140 SARNPP82979 210 aaKnown RBP15.22■□□□□ 0.03
CPSF1-212ENST00000616140 TSGA10IPQ3SY00 556 aa15.22■□□□□ 0.03
CPSF1-212ENST00000616140 CCDC117Q8IWD4 279 aaPredicted RBP15.22■□□□□ 0.03
CPSF1-212ENST00000616140 LRRC8CQ8TDW0 803 aa15.22■□□□□ 0.03
CPSF1-212ENST00000616140 SLC7A3Q8WY07 619 aa15.22■□□□□ 0.03
CPSF1-212ENST00000616140 ADPGKQ9BRR6 497 aa15.22■□□□□ 0.03
CPSF1-212ENST00000616140 DDX23Q9BUQ8 820 aaKnown RBP15.22■□□□□ 0.03
CPSF1-212ENST00000616140 AP1M1Q9BXS5 423 aa15.22■□□□□ 0.03
CPSF1-212ENST00000616140 ARHGAP42A6NI28 874 aa15.22■□□□□ 0.03
CPSF1-212ENST00000616140 SEPT2Q15019 361 aa15.22■□□□□ 0.03
CPSF1-212ENST00000616140 PFKFB3Q16875 520 aaPredicted RBP15.22■□□□□ 0.03
CPSF1-212ENST00000616140 SHC4Q6S5L8 630 aa15.22■□□□□ 0.03
CPSF1-212ENST00000616140 UBE2TQ9NPD8 197 aaPredicted RBP15.22■□□□□ 0.03
CPSF1-212ENST00000616140 CD2APQ9Y5K6 639 aa15.22■□□□□ 0.03
CPSF1-212ENST00000616140 MAD1L1Q9Y6D9 718 aa15.22■□□□□ 0.03
CPSF1-212ENST00000616140 CHGBP05060 677 aa15.21■□□□□ 0.03
CPSF1-212ENST00000616140 PRR29P0C7W0 189 aa15.21■□□□□ 0.03
CPSF1-212ENST00000616140 FLAD1Q8NFF5 587 aa15.21■□□□□ 0.03
CPSF1-212ENST00000616140 TMEM47Q9BQJ4 181 aa15.21■□□□□ 0.03
CPSF1-212ENST00000616140 EPC1Q9H2F5 836 aa15.21■□□□□ 0.03
CPSF1-212ENST00000616140 NFU1Q9UMS0 254 aa15.21■□□□□ 0.03
CPSF1-212ENST00000616140 PCDHB4Q9Y5E5 795 aa15.21■□□□□ 0.03
CPSF1-212ENST00000616140 HOXA13P31271 388 aaPredicted RBP15.21■□□□□ 0.03
CPSF1-212ENST00000616140 YWHAGP61981 247 aaKnown RBP eCLIP15.21■□□□□ 0.03
CPSF1-212ENST00000616140 CEP170P1Q96L14 293 aa15.21■□□□□ 0.03
CPSF1-212ENST00000616140 PI4KBQ9UBF8 816 aa15.21■□□□□ 0.03
CPSF1-212ENST00000616140 SEPT9Q9UHD8 586 aaPredicted RBP15.21■□□□□ 0.03
CPSF1-212ENST00000616140 NCAPD2Q15021 1401 aa15.21■□□□□ 0.03
CPSF1-212ENST00000616140 MED14O60244 1454 aa15.21■□□□□ 0.03
CPSF1-212ENST00000616140 AFAP1L2Q8N4X5 818 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms