RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 PPP1R2P3Q6NXS1 205 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 TRAF7Q6Q0C0 670 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 LRRC59Q96AG4 307 aaKnown RBP5.35□□□□□ -1.55
VPS13D-213ENST00000613099 L1RE1Q9UN81 338 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 NPATQ14207 1427 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 TMEM110-MUSTN1A8MSY1 372 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 IRF6O14896 467 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 GRIN1Q05586 938 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 KAZNQ674X7 775 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 CDR2LQ86X02 465 aaPredicted RBP5.35□□□□□ -1.55
VPS13D-213ENST00000613099 KRT82Q9NSB4 513 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 CEP126Q9P2H0 1117 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 CAB39Q9Y376 341 aaPredicted RBP5.35□□□□□ -1.55
VPS13D-213ENST00000613099 RBM47A0AV96 593 aaKnown RBP5.35□□□□□ -1.55
VPS13D-213ENST00000613099 EPB41P11171 864 aaKnown RBP5.35□□□□□ -1.55
VPS13D-213ENST00000613099 ADCY1Q08828 1119 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 MRPL28Q13084 256 aaKnown RBP5.35□□□□□ -1.55
VPS13D-213ENST00000613099 TEDDM1Q5T9Z0 273 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 WDR93Q6P2C0 686 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 PITPNM3Q9BZ71 974 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 SMIM31A0A1B0GVY4 71 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 TSPY2A6NKD2 308 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 TSPY3P0CV98 308 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 TSPY8P0CW00 308 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 PDHBP11177 359 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 PPARGP37231 505 aaPredicted RBP5.35□□□□□ -1.55
VPS13D-213ENST00000613099 TSPY1Q01534 308 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 ITGA9Q13797 1035 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 WASHC2DQ5SRD0 308 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 LRRC8BQ6P9F7 803 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 CCDC89Q8N998 374 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 SCAIQ8N9R8 606 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 ANKRD36BP1Q96IX9 119 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 NDNQ99608 321 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 TYW1Q9NV66 732 aaKnown RBP5.35□□□□□ -1.55
VPS13D-213ENST00000613099 RTEL1Q9NZ71 1219 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 CTNNAL1Q9UBT7 734 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 TMC5Q6UXY8 1006 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 OMA1Q96E52 524 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 WDR24Q96S15 920 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 PLGRKTQ9HBL7 147 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 NALCNQ8IZF0 1738 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 CAPN15O75808 1086 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 RIPK1Q13546 671 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 C1orf146Q5VVC0 180 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 B3GNT6Q6ZMB0 384 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 DNAAF2Q9NVR5 837 aaKnown RBP5.35□□□□□ -1.55
VPS13D-213ENST00000613099 ZNF229Q9UJW7 825 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 DLG5Q8TDM6 1919 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 PARD3Q8TEW0 1356 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 HSP90AA4PQ58FG1 418 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 SIX6OS1Q8N1H7 587 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 ZBTB8BQ8NAP8 495 aaPredicted RBP5.35□□□□□ -1.55
VPS13D-213ENST00000613099 RABGEF1Q9UJ41 708 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 FBXO2Q9UK22 296 aaPredicted RBP5.35□□□□□ -1.55
VPS13D-213ENST00000613099 ANGPTL3Q9Y5C1 460 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 NPTXRO95502 500 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 SFMBT2Q5VUG0 894 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 ZNF446Q9NWS9 450 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 CD2APQ9Y5K6 639 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 FNTAP49354 379 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 PDAP1Q13442 181 aaKnown RBP5.35□□□□□ -1.55
VPS13D-213ENST00000613099 C10orf76Q5T2E6 689 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 FUKQ8N0W3 1084 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 DCLRE1BQ9H816 532 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 RCOR1Q9UKL0 485 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 PTCH1Q13635 1447 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 HECW2Q9P2P5 1572 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 SYF2O95926 243 aaKnown RBP5.35□□□□□ -1.55
VPS13D-213ENST00000613099 SP100P23497 879 aaPredicted RBP5.35□□□□□ -1.55
VPS13D-213ENST00000613099 PLCD1P51178 756 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 POSTNQ15063 836 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 DHX32Q7L7V1 743 aaKnown RBP5.35□□□□□ -1.55
VPS13D-213ENST00000613099 RAB21Q9UL25 225 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 HBS1LQ9Y450 684 aaKnown RBP5.35□□□□□ -1.55
VPS13D-213ENST00000613099 CAMSAP1Q5T5Y3 1602 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 H0Y3Z8 333 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 CCDC22O60826 627 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 RSRC2Q7L4I2 434 aaKnown RBP5.35□□□□□ -1.55
VPS13D-213ENST00000613099 BARX2Q9UMQ3 279 aaPredicted RBP5.35□□□□□ -1.55
VPS13D-213ENST00000613099 KIF22Q14807 665 aa5.35□□□□□ -1.55
VPS13D-213ENST00000613099 TET3O43151 1660 aa5.34□□□□□ -1.55
VPS13D-213ENST00000613099 GRID2IPA4D2P6 1211 aa5.34□□□□□ -1.55
VPS13D-213ENST00000613099 H7C1D1 291 aa5.34□□□□□ -1.55
VPS13D-213ENST00000613099 SCG2P13521 617 aa5.34□□□□□ -1.55
VPS13D-213ENST00000613099 AFMP43652 599 aa5.34□□□□□ -1.55
VPS13D-213ENST00000613099 FLIIQ13045 1269 aa5.34□□□□□ -1.55
VPS13D-213ENST00000613099 SPIDRQ14159 915 aa5.34□□□□□ -1.55
VPS13D-213ENST00000613099 PDCD4Q53EL6 469 aaKnown RBP5.34□□□□□ -1.55
VPS13D-213ENST00000613099 PPP6R3Q5H9R7 873 aaPredicted RBP5.34□□□□□ -1.55
VPS13D-213ENST00000613099 WLSQ5T9L3 541 aa5.34□□□□□ -1.55
VPS13D-213ENST00000613099 MAB21L3Q8N8X9 362 aa5.34□□□□□ -1.55
VPS13D-213ENST00000613099 PPP2R3CQ969Q6 453 aa5.34□□□□□ -1.55
VPS13D-213ENST00000613099 MATN2O00339 956 aa5.34□□□□□ -1.55
VPS13D-213ENST00000613099 DNAJC6O75061 913 aa5.34□□□□□ -1.55
VPS13D-213ENST00000613099 ESRRAP11474 423 aaPredicted RBP5.34□□□□□ -1.55
VPS13D-213ENST00000613099 IARSP41252 1262 aaKnown RBP5.34□□□□□ -1.55
VPS13D-213ENST00000613099 LONRF3Q496Y0 759 aa5.34□□□□□ -1.55
VPS13D-213ENST00000613099 DDX20Q9UHI6 824 aaKnown RBP5.34□□□□□ -1.55
VPS13D-213ENST00000613099 NOC2LQ9Y3T9 749 aaKnown RBP5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms