RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 MMP1P03956 469 aa18.87■□□□□ 0.61
CCDC28A-202ENST00000611852 BEX3Q00994 111 aa18.87■□□□□ 0.61
CCDC28A-202ENST00000611852 CUL4AQ13619 759 aa18.87■□□□□ 0.61
CCDC28A-202ENST00000611852 TRIM29Q14134 588 aa18.87■□□□□ 0.61
CCDC28A-202ENST00000611852 KCNA10Q16322 511 aa18.87■□□□□ 0.61
CCDC28A-202ENST00000611852 FSCN1Q16658 493 aaKnown RBP18.87■□□□□ 0.61
CCDC28A-202ENST00000611852 CEP55Q53EZ4 464 aa18.87■□□□□ 0.61
CCDC28A-202ENST00000611852 CYP2W1Q8TAV3 490 aa18.87■□□□□ 0.61
CCDC28A-202ENST00000611852 SNX21Q969T3 373 aa18.87■□□□□ 0.61
CCDC28A-202ENST00000611852 MXRA8Q9BRK3 442 aa18.87■□□□□ 0.61
CCDC28A-202ENST00000611852 TSEN34Q9BSV6 310 aaKnown RBP18.87■□□□□ 0.61
CCDC28A-202ENST00000611852 C11orf49Q9H6J7 331 aa18.87■□□□□ 0.61
CCDC28A-202ENST00000611852 JADE2Q9NQC1 790 aa18.87■□□□□ 0.61
CCDC28A-202ENST00000611852 PHF24Q9UPV7 400 aa18.87■□□□□ 0.61
CCDC28A-202ENST00000611852 UBA1P22314 1058 aaKnown RBP18.86■□□□□ 0.61
CCDC28A-202ENST00000611852 ARHGAP1Q07960 439 aa18.86■□□□□ 0.61
CCDC28A-202ENST00000611852 MTMR1Q13613 665 aa18.86■□□□□ 0.61
CCDC28A-202ENST00000611852 KRT25Q7Z3Z0 450 aa18.86■□□□□ 0.61
CCDC28A-202ENST00000611852 PCSK9Q8NBP7 692 aaKnown RBP18.86■□□□□ 0.61
CCDC28A-202ENST00000611852 TBCKQ8TEA7 893 aa18.86■□□□□ 0.61
CCDC28A-202ENST00000611852 EMID1Q96A84 441 aaPredicted RBP18.86■□□□□ 0.61
CCDC28A-202ENST00000611852 C8orf76Q96K31 380 aa18.86■□□□□ 0.61
CCDC28A-202ENST00000611852 MOXD2PA6NHM9 499 aa18.85■□□□□ 0.61
CCDC28A-202ENST00000611852 FAM86B1E9PN63 330 aa18.85■□□□□ 0.61
CCDC28A-202ENST00000611852 K7ELQ4 463 aaPredicted RBP18.85■□□□□ 0.61
CCDC28A-202ENST00000611852 MAFGO15525 162 aa18.85■□□□□ 0.61
CCDC28A-202ENST00000611852 EDIL3O43854 480 aa18.85■□□□□ 0.61
CCDC28A-202ENST00000611852 FAM86B2P0C5J1 330 aa18.85■□□□□ 0.61
CCDC28A-202ENST00000611852 KRT2P35908 639 aa18.85■□□□□ 0.61
CCDC28A-202ENST00000611852 ACLYP53396 1101 aa18.85■□□□□ 0.61
CCDC28A-202ENST00000611852 CELF3Q5SZQ8 465 aaKnown RBP18.85■□□□□ 0.61
CCDC28A-202ENST00000611852 MYSM1Q5VVJ2 828 aa18.85■□□□□ 0.61
CCDC28A-202ENST00000611852 FBXO18Q8NFZ0 1043 aa18.85■□□□□ 0.61
CCDC28A-202ENST00000611852 CDHR1Q96JP9 859 aa18.85■□□□□ 0.61
CCDC28A-202ENST00000611852 SENP6Q9GZR1 1112 aaPredicted RBP18.85■□□□□ 0.61
CCDC28A-202ENST00000611852 BRMS1Q9HCU9 246 aa18.85■□□□□ 0.61
CCDC28A-202ENST00000611852 TSHZ2Q9NRE2 1034 aa18.85■□□□□ 0.61
CCDC28A-202ENST00000611852 KCNH7Q9NS40 1196 aa18.85■□□□□ 0.61
CCDC28A-202ENST00000611852 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.85■□□□□ 0.61
CCDC28A-202ENST00000611852 A6NJR5 290 aa18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 MEIS1O00470 390 aa18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 GGPS1O95749 300 aa18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 ASGR1P07306 291 aa18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 GJB2P29033 226 aa18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 ZNF76P36508 570 aa18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 CPT1AP50416 773 aa18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 USP11P51784 963 aa18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 GUCY1B3Q02153 619 aa18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 NR5A1Q13285 461 aa18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 LAMC2Q13753 1193 aa18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 NONOQ15233 471 aaKnown RBP eCLIP18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 DHX37Q8IY37 1157 aaKnown RBP18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 DIS3L2Q8IYB7 885 aaKnown RBP18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 TNFRSF25Q93038 417 aa18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 FERMT2Q96AC1 680 aa18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 SENP7Q9BQF6 1050 aa18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 BCAS3Q9H6U6 928 aa18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 IGLV3-22A0A075B6J6 115 aa18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 CCDC194A0A1B0GVG4 234 aa18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 BTBD18B2RXH4 712 aa18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 ATP9AO75110 1047 aa18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 CIITAP33076 1130 aa18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 NEDD9Q14511 834 aa18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 NIPA1Q7RTP0 329 aa18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 AFG1LQ8WV93 481 aa18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 SMC3Q9UQE7 1217 aa18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 KIF3AQ9Y496 699 aa18.84■□□□□ 0.61
CCDC28A-202ENST00000611852 A0A1W2PQ45 241 aaPredicted RBP18.83■□□□□ 0.6
CCDC28A-202ENST00000611852 A0A1W2PQY0 241 aa18.83■□□□□ 0.6
CCDC28A-202ENST00000611852 ZEB2O60315 1214 aa18.83■□□□□ 0.6
CCDC28A-202ENST00000611852 SORBS3O60504 671 aa18.83■□□□□ 0.6
CCDC28A-202ENST00000611852 ARP10275 920 aa18.83■□□□□ 0.6
CCDC28A-202ENST00000611852 KCNA2P16389 499 aa18.83■□□□□ 0.6
CCDC28A-202ENST00000611852 INF2Q27J81 1249 aa18.83■□□□□ 0.6
CCDC28A-202ENST00000611852 BRDTQ58F21 947 aaPredicted RBP18.83■□□□□ 0.6
CCDC28A-202ENST00000611852 EARS2Q5JPH6 523 aaKnown RBP18.83■□□□□ 0.6
CCDC28A-202ENST00000611852 PIK3AP1Q6ZUJ8 805 aa18.83■□□□□ 0.6
CCDC28A-202ENST00000611852 MLXIPQ9HAP2 919 aa18.83■□□□□ 0.6
CCDC28A-202ENST00000611852 MMP3P08254 477 aa18.82■□□□□ 0.6
CCDC28A-202ENST00000611852 MLLT1Q03111 559 aaPredicted RBP18.82■□□□□ 0.6
CCDC28A-202ENST00000611852 SAFBQ15424 915 aaKnown RBP eCLIP18.82■□□□□ 0.6
CCDC28A-202ENST00000611852 HSDL1Q3SXM5 330 aa18.82■□□□□ 0.6
CCDC28A-202ENST00000611852 METTL7BQ6UX53 244 aa18.82■□□□□ 0.6
CCDC28A-202ENST00000611852 CXCL17Q6UXB2 119 aa18.82■□□□□ 0.6
CCDC28A-202ENST00000611852 CYFIP1Q7L576 1253 aa18.82■□□□□ 0.6
CCDC28A-202ENST00000611852 PLA2G4DQ86XP0 818 aa18.82■□□□□ 0.6
CCDC28A-202ENST00000611852 GIMAP8Q8ND71 665 aaPredicted RBP18.82■□□□□ 0.6
CCDC28A-202ENST00000611852 PPTC7Q8NI37 304 aa18.82■□□□□ 0.6
CCDC28A-202ENST00000611852 DOCK5Q9H7D0 1870 aa18.82■□□□□ 0.6
CCDC28A-202ENST00000611852 FAM205CA6NFA0 338 aa18.81■□□□□ 0.6
CCDC28A-202ENST00000611852 PURAQ00577 322 aaKnown RBP18.81■□□□□ 0.6
CCDC28A-202ENST00000611852 PRR16Q569H4 304 aa18.81■□□□□ 0.6
CCDC28A-202ENST00000611852 LENG9Q96B70 501 aa18.81■□□□□ 0.6
CCDC28A-202ENST00000611852 GLT1D1Q96MS3 346 aa18.81■□□□□ 0.6
CCDC28A-202ENST00000611852 SPATA33Q96N06 139 aa18.81■□□□□ 0.6
CCDC28A-202ENST00000611852 HTATIP2Q9BUP3 242 aa18.81■□□□□ 0.6
CCDC28A-202ENST00000611852 AGO4Q9HCK5 861 aaKnown RBP18.81■□□□□ 0.6
CCDC28A-202ENST00000611852 POLR3EQ9NVU0 708 aa18.81■□□□□ 0.6
CCDC28A-202ENST00000611852 PKD2L1Q9P0L9 805 aa18.81■□□□□ 0.6
CCDC28A-202ENST00000611852 CYP3A7-CYP3A51PA0A087WV96 503 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 106.1 ms