RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 SCN10AQ9Y5Y9 1956 aa19.28■□□□□ 0.68
TRIM28-215ENST00000601150 LTBP2Q14767 1821 aa19.28■□□□□ 0.68
TRIM28-215ENST00000601150 SPATA31C2B4DYI2 1134 aa19.28■□□□□ 0.68
TRIM28-215ENST00000601150 PQBP1O60828 265 aaKnown RBP19.28■□□□□ 0.68
TRIM28-215ENST00000601150 GGPS1O95749 300 aa19.28■□□□□ 0.68
TRIM28-215ENST00000601150 MMP3P08254 477 aa19.28■□□□□ 0.68
TRIM28-215ENST00000601150 UBA1P22314 1058 aaKnown RBP19.28■□□□□ 0.68
TRIM28-215ENST00000601150 CDK7P50613 346 aa19.28■□□□□ 0.68
TRIM28-215ENST00000601150 SP2Q02086 613 aa19.28■□□□□ 0.68
TRIM28-215ENST00000601150 ME3Q16798 604 aa19.28■□□□□ 0.68
TRIM28-215ENST00000601150 CELF3Q5SZQ8 465 aaKnown RBP19.28■□□□□ 0.68
TRIM28-215ENST00000601150 ANKRD33Q7Z3H0 272 aa19.28■□□□□ 0.68
TRIM28-215ENST00000601150 BICD2Q8TD16 824 aa19.28■□□□□ 0.68
TRIM28-215ENST00000601150 PGBD1Q96JS3 809 aa19.28■□□□□ 0.68
TRIM28-215ENST00000601150 MTG1Q9BT17 334 aaPredicted RBP19.28■□□□□ 0.68
TRIM28-215ENST00000601150 SEZ6LQ9BYH1 1024 aa19.28■□□□□ 0.68
TRIM28-215ENST00000601150 PRKAG2Q9UGJ0 569 aa19.28■□□□□ 0.68
TRIM28-215ENST00000601150 STK36Q9NRP7 1315 aa19.27■□□□□ 0.68
TRIM28-215ENST00000601150 DCDC2CA8MYV0 355 aa19.27■□□□□ 0.68
TRIM28-215ENST00000601150 LARGE1O95461 756 aa19.27■□□□□ 0.68
TRIM28-215ENST00000601150 SEMA3FQ13275 785 aa19.27■□□□□ 0.68
TRIM28-215ENST00000601150 ITGA7Q13683 1181 aa19.27■□□□□ 0.68
TRIM28-215ENST00000601150 MYSM1Q5VVJ2 828 aa19.27■□□□□ 0.68
TRIM28-215ENST00000601150 JAKMIP3Q5VZ66 844 aa19.27■□□□□ 0.68
TRIM28-215ENST00000601150 FAM177A1Q8N128 213 aaPredicted RBP19.27■□□□□ 0.68
TRIM28-215ENST00000601150 REXO1Q8N1G1 1221 aaKnown RBP19.27■□□□□ 0.68
TRIM28-215ENST00000601150 NECAB1Q8N987 351 aa19.27■□□□□ 0.68
TRIM28-215ENST00000601150 PPTC7Q8NI37 304 aa19.27■□□□□ 0.68
TRIM28-215ENST00000601150 GTF3C6Q969F1 213 aa19.27■□□□□ 0.68
TRIM28-215ENST00000601150 GPRASP2Q96D09 838 aa19.27■□□□□ 0.68
TRIM28-215ENST00000601150 TOX2Q96NM4 488 aa19.27■□□□□ 0.68
TRIM28-215ENST00000601150 UBIAD1Q9Y5Z9 338 aa19.27■□□□□ 0.68
TRIM28-215ENST00000601150 ITGB5P18084 799 aa19.26■□□□□ 0.67
TRIM28-215ENST00000601150 SREBF1P36956 1147 aa19.26■□□□□ 0.67
TRIM28-215ENST00000601150 NLRP5P59047 1200 aa19.26■□□□□ 0.67
TRIM28-215ENST00000601150 PSMC6P62333 389 aa19.26■□□□□ 0.67
TRIM28-215ENST00000601150 NEDD9Q14511 834 aa19.26■□□□□ 0.67
TRIM28-215ENST00000601150 DGKDQ16760 1214 aa19.26■□□□□ 0.67
TRIM28-215ENST00000601150 SLC43A3Q8NBI5 491 aa19.26■□□□□ 0.67
TRIM28-215ENST00000601150 CDHR1Q96JP9 859 aa19.26■□□□□ 0.67
TRIM28-215ENST00000601150 SPATA33Q96N06 139 aa19.26■□□□□ 0.67
TRIM28-215ENST00000601150 MLXIPQ9HAP2 919 aa19.26■□□□□ 0.67
TRIM28-215ENST00000601150 PRDM5Q9NQX1 630 aaPredicted RBP19.26■□□□□ 0.67
TRIM28-215ENST00000601150 PDLIM7Q9NR12 457 aa19.26■□□□□ 0.67
TRIM28-215ENST00000601150 LIMCH1Q9UPQ0 1083 aa19.26■□□□□ 0.67
TRIM28-215ENST00000601150 GRIN2DO15399 1336 aa19.25■□□□□ 0.67
TRIM28-215ENST00000601150 ADAMTS3O15072 1205 aa19.25■□□□□ 0.67
TRIM28-215ENST00000601150 SORBS3O60504 671 aa19.25■□□□□ 0.67
TRIM28-215ENST00000601150 CTDNEP1O95476 244 aa19.25■□□□□ 0.67
TRIM28-215ENST00000601150 CLTBP09497 229 aa19.25■□□□□ 0.67
TRIM28-215ENST00000601150 SENP7Q9BQF6 1050 aa19.25■□□□□ 0.67
TRIM28-215ENST00000601150 JADE2Q9NQC1 790 aa19.25■□□□□ 0.67
TRIM28-215ENST00000601150 TLR3O15455 904 aaKnown RBP19.24■□□□□ 0.67
TRIM28-215ENST00000601150 ARHGAP4P98171 946 aa19.24■□□□□ 0.67
TRIM28-215ENST00000601150 FAAP100Q0VG06 881 aa19.24■□□□□ 0.67
TRIM28-215ENST00000601150 MTMR1Q13613 665 aa19.24■□□□□ 0.67
TRIM28-215ENST00000601150 RABEP1Q15276 862 aa19.24■□□□□ 0.67
TRIM28-215ENST00000601150 HSDL1Q3SXM5 330 aa19.24■□□□□ 0.67
TRIM28-215ENST00000601150 METTL7BQ6UX53 244 aa19.24■□□□□ 0.67
TRIM28-215ENST00000601150 CHRDL2Q6WN34 429 aa19.24■□□□□ 0.67
TRIM28-215ENST00000601150 FAM126BQ8IXS8 530 aa19.24■□□□□ 0.67
TRIM28-215ENST00000601150 GIMAP8Q8ND71 665 aaPredicted RBP19.24■□□□□ 0.67
TRIM28-215ENST00000601150 MXRA8Q9BRK3 442 aa19.24■□□□□ 0.67
TRIM28-215ENST00000601150 ORC3Q9UBD5 711 aaPredicted RBP19.24■□□□□ 0.67
TRIM28-215ENST00000601150 MAFGO15525 162 aa19.23■□□□□ 0.67
TRIM28-215ENST00000601150 PPFIA4O75335 1185 aa19.23■□□□□ 0.67
TRIM28-215ENST00000601150 HOXD8P13378 290 aaPredicted RBP19.23■□□□□ 0.67
TRIM28-215ENST00000601150 MAGEA10P43363 369 aaPredicted RBP19.23■□□□□ 0.67
TRIM28-215ENST00000601150 GALNT17Q6IS24 598 aa19.23■□□□□ 0.67
TRIM28-215ENST00000601150 CYFIP1Q7L576 1253 aa19.23■□□□□ 0.67
TRIM28-215ENST00000601150 SH3RF1Q7Z6J0 888 aa19.23■□□□□ 0.67
TRIM28-215ENST00000601150 WASF1Q92558 559 aa19.23■□□□□ 0.67
TRIM28-215ENST00000601150 AIFM3Q96NN9 605 aa19.23■□□□□ 0.67
TRIM28-215ENST00000601150 LBHD1Q9BQE6 289 aaPredicted RBP19.23■□□□□ 0.67
TRIM28-215ENST00000601150 BCAS3Q9H6U6 928 aa19.23■□□□□ 0.67
TRIM28-215ENST00000601150 TMEM39AQ9NV64 488 aa19.23■□□□□ 0.67
TRIM28-215ENST00000601150 PCDHA4Q9UN74 947 aa19.23■□□□□ 0.67
TRIM28-215ENST00000601150 COLQQ9Y215 455 aaPredicted RBP19.23■□□□□ 0.67
TRIM28-215ENST00000601150 TRIM43BA6NCK2 446 aa19.22■□□□□ 0.67
TRIM28-215ENST00000601150 KIAA0355O15063 1070 aa19.22■□□□□ 0.67
TRIM28-215ENST00000601150 KCNA2P16389 499 aa19.22■□□□□ 0.67
TRIM28-215ENST00000601150 XBP1P17861 261 aa19.22■□□□□ 0.67
TRIM28-215ENST00000601150 ZNF76P36508 570 aa19.22■□□□□ 0.67
TRIM28-215ENST00000601150 NBPF20Q3BBV1 942 aa19.22■□□□□ 0.67
TRIM28-215ENST00000601150 CEP55Q53EZ4 464 aa19.22■□□□□ 0.67
TRIM28-215ENST00000601150 BLIDQ8IZY5 108 aa19.22■□□□□ 0.67
TRIM28-215ENST00000601150 RASGRP4Q8TDF6 673 aa19.22■□□□□ 0.67
TRIM28-215ENST00000601150 CRYGNQ8WXF5 182 aa19.22■□□□□ 0.67
TRIM28-215ENST00000601150 TRIM43Q96BQ3 446 aaPredicted RBP19.22■□□□□ 0.67
TRIM28-215ENST00000601150 ZSCAN31Q96LW9 406 aaPredicted RBP19.22■□□□□ 0.67
TRIM28-215ENST00000601150 GDF15Q99988 308 aa19.22■□□□□ 0.67
TRIM28-215ENST00000601150 NOP56O00567 594 aaKnown RBP19.21■□□□□ 0.67
TRIM28-215ENST00000601150 DTNBO60941 627 aa19.21■□□□□ 0.67
TRIM28-215ENST00000601150 ATP9AO75110 1047 aa19.21■□□□□ 0.67
TRIM28-215ENST00000601150 CD4P01730 458 aa19.21■□□□□ 0.67
TRIM28-215ENST00000601150 CYP3A4P08684 503 aa19.21■□□□□ 0.67
TRIM28-215ENST00000601150 ZNF286BP0CG31 522 aa19.21■□□□□ 0.67
TRIM28-215ENST00000601150 FAM47CQ5HY64 1035 aa19.21■□□□□ 0.67
TRIM28-215ENST00000601150 NFRKBQ6P4R8 1299 aa19.21■□□□□ 0.67
TRIM28-215ENST00000601150 NIPA1Q7RTP0 329 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms