RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	HEATR3	Q7Z4Q2	680 aa		10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	SESTD1	Q86VW0	696 aa		10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	FCHSD1	Q86WN1	690 aa		10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	OR6J1	Q8NGC5	347 aa		10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	PPTC7	Q8NI37	304 aa		10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	AFG1L	Q8WV93	481 aa		10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	CUL5	Q93034	780 aa		10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	VWCE	Q96DN2	955 aa		10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	GLT8D2	Q9H1C3	349 aa		10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	BCAS3	Q9H6U6	928 aa		10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	PDRG1	Q9NUG6	133 aa		10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	POLR3E	Q9NVU0	708 aa		10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	PCDH10	Q9P2E7	1040 aa		10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	TPCN1	Q9ULQ1	816 aa		10.1	□□□□□ -0.79
SSBP4-208	ENST00000600628	CTDNEP1	O95476	244 aa		10.09	□□□□□ -0.79
SSBP4-208	ENST00000600628	F2	P00734	622 aa		10.09	□□□□□ -0.79
SSBP4-208	ENST00000600628	MMP3	P08254	477 aa		10.09	□□□□□ -0.79
SSBP4-208	ENST00000600628	CYP3A4	P08684	503 aa		10.09	□□□□□ -0.79
SSBP4-208	ENST00000600628	CLTB	P09497	229 aa		10.09	□□□□□ -0.79
SSBP4-208	ENST00000600628	SREBF1	P36956	1147 aa		10.09	□□□□□ -0.79
SSBP4-208	ENST00000600628	CCT2	P78371	535 aa	Known RBP	10.09	□□□□□ -0.79
SSBP4-208	ENST00000600628	FGD1	P98174	961 aa		10.09	□□□□□ -0.79
SSBP4-208	ENST00000600628	SCRN1	Q12765	414 aa		10.09	□□□□□ -0.79
SSBP4-208	ENST00000600628	AP3B2	Q13367	1082 aa		10.09	□□□□□ -0.79
SSBP4-208	ENST00000600628	ITGA7	Q13683	1181 aa		10.09	□□□□□ -0.79
SSBP4-208	ENST00000600628	LAMC2	Q13753	1193 aa		10.09	□□□□□ -0.79
SSBP4-208	ENST00000600628	NFRKB	Q6P4R8	1299 aa		10.09	□□□□□ -0.79
SSBP4-208	ENST00000600628	SMARCC2	Q8TAQ2	1214 aa		10.09	□□□□□ -0.79
SSBP4-208	ENST00000600628	PHKB	Q93100	1093 aa		10.09	□□□□□ -0.79
SSBP4-208	ENST00000600628	GPRASP2	Q96D09	838 aa		10.09	□□□□□ -0.79
SSBP4-208	ENST00000600628	LBHD1	Q9BQE6	289 aa	Predicted RBP	10.09	□□□□□ -0.79
SSBP4-208	ENST00000600628	UBE2O	Q9C0C9	1292 aa	Known RBP	10.09	□□□□□ -0.79
SSBP4-208	ENST00000600628	PRDM5	Q9NQX1	630 aa	Predicted RBP	10.09	□□□□□ -0.79
SSBP4-208	ENST00000600628	SH3GLB2	Q9NR46	395 aa		10.09	□□□□□ -0.79
SSBP4-208	ENST00000600628	PCDHA6	Q9UN73	950 aa		10.09	□□□□□ -0.79
SSBP4-208	ENST00000600628	PCDHA8	Q9Y5H6	950 aa		10.09	□□□□□ -0.79
SSBP4-208	ENST00000600628	MRVI1	Q9Y6F6	885 aa		10.09	□□□□□ -0.79
SSBP4-208	ENST00000600628	STK36	Q9NRP7	1315 aa		10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	PRUNE2	Q8WUY3	3088 aa		10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	IGLV3-22	A0A075B6J6	115 aa		10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	SMCO2	A6NFE2	343 aa		10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	DCDC2C	A8MYV0	355 aa		10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	MEIS1	O00470	390 aa		10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	MAFG	O15525	162 aa		10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	FIBP	O43427	364 aa		10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	ZEB2	O60315	1214 aa		10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	PQBP1	O60828	265 aa	Known RBP	10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	PPFIA4	O75335	1185 aa		10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	MYCL	P12524	364 aa	Predicted RBP	10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	KCNA2	P16389	499 aa		10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	AK2	P54819	239 aa		10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	NAPA	P54920	295 aa		10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	PTPN11	Q06124	597 aa	Predicted RBP	10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	ST3GAL1	Q11201	340 aa		10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	ME3	Q16798	604 aa		10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	HSDL1	Q3SXM5	330 aa		10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	NIPA1	Q7RTP0	329 aa		10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	TDH	Q8IZJ6	230 aa		10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	TET1	Q8NFU7	2136 aa		10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	VTI1A	Q96AJ9	217 aa		10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	C16orf70	Q9BSU1	422 aa		10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	MTG1	Q9BT17	334 aa	Predicted RBP	10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	TELO2	Q9Y4R8	837 aa		10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	TANC1	Q9C0D5	1861 aa		10.08	□□□□□ -0.8
SSBP4-208	ENST00000600628	B4GALT4	O60513	344 aa		10.07	□□□□□ -0.8
SSBP4-208	ENST00000600628	ATP9A	O75110	1047 aa		10.07	□□□□□ -0.8
SSBP4-208	ENST00000600628	LARGE1	O95461	756 aa		10.07	□□□□□ -0.8
SSBP4-208	ENST00000600628	GGPS1	O95749	300 aa		10.07	□□□□□ -0.8
SSBP4-208	ENST00000600628	TIMP1	P01033	207 aa		10.07	□□□□□ -0.8
SSBP4-208	ENST00000600628	FDPS	P14324	419 aa	Known RBP	10.07	□□□□□ -0.8
SSBP4-208	ENST00000600628	CIITA	P33076	1130 aa		10.07	□□□□□ -0.8
SSBP4-208	ENST00000600628	ADCY7	P51828	1080 aa		10.07	□□□□□ -0.8
SSBP4-208	ENST00000600628	PSMC6	P62333	389 aa		10.07	□□□□□ -0.8
SSBP4-208	ENST00000600628	RBL2	Q08999	1139 aa		10.07	□□□□□ -0.8
SSBP4-208	ENST00000600628	ANKRD1	Q15327	319 aa		10.07	□□□□□ -0.8
SSBP4-208	ENST00000600628	DGKD	Q16760	1214 aa		10.07	□□□□□ -0.8
SSBP4-208	ENST00000600628	NBPF20	Q3BBV1	942 aa		10.07	□□□□□ -0.8
SSBP4-208	ENST00000600628	GNPTAB	Q3T906	1256 aa		10.07	□□□□□ -0.8
SSBP4-208	ENST00000600628	MCTP2	Q6DN12	878 aa		10.07	□□□□□ -0.8
SSBP4-208	ENST00000600628	METTL7B	Q6UX53	244 aa		10.07	□□□□□ -0.8
SSBP4-208	ENST00000600628	DAGLB	Q8NCG7	672 aa		10.07	□□□□□ -0.8
SSBP4-208	ENST00000600628	CYP2W1	Q8TAV3	490 aa		10.07	□□□□□ -0.8
SSBP4-208	ENST00000600628	BAD	Q92934	168 aa		10.07	□□□□□ -0.8
SSBP4-208	ENST00000600628	LARP6	Q9BRS8	491 aa	Known RBP	10.07	□□□□□ -0.8
SSBP4-208	ENST00000600628	ANO3	Q9BYT9	981 aa		10.07	□□□□□ -0.8
SSBP4-208	ENST00000600628	JADE2	Q9NQC1	790 aa		10.07	□□□□□ -0.8
SSBP4-208	ENST00000600628	TMEM39A	Q9NV64	488 aa		10.07	□□□□□ -0.8
SSBP4-208	ENST00000600628	REV3L	O60673	3130 aa		10.07	□□□□□ -0.8
SSBP4-208	ENST00000600628		A0A0C4DFX4	3053 aa		10.07	□□□□□ -0.8
SSBP4-208	ENST00000600628	SCN5A	Q14524	2016 aa		10.06	□□□□□ -0.8
SSBP4-208	ENST00000600628	KAT6A	Q92794	2004 aa		10.06	□□□□□ -0.8
SSBP4-208	ENST00000600628	SPDYE3	A6NKU9	549 aa		10.06	□□□□□ -0.8
SSBP4-208	ENST00000600628	DHX15	O43143	795 aa	Known RBP	10.06	□□□□□ -0.8
SSBP4-208	ENST00000600628	DEXI	O95424	95 aa		10.06	□□□□□ -0.8
SSBP4-208	ENST00000600628	ADAM17	P78536	824 aa		10.06	□□□□□ -0.8
SSBP4-208	ENST00000600628	NEDD9	Q14511	834 aa		10.06	□□□□□ -0.8
SSBP4-208	ENST00000600628	LRIT3	Q3SXY7	679 aa		10.06	□□□□□ -0.8
SSBP4-208	ENST00000600628	CEP55	Q53EZ4	464 aa		10.06	□□□□□ -0.8
SSBP4-208	ENST00000600628	BRDT	Q58F21	947 aa	Predicted RBP	10.06	□□□□□ -0.8
SSBP4-208	ENST00000600628	RASIP1	Q5U651	963 aa		10.06	□□□□□ -0.8

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