RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 CDKL5O76039 1030 aa14.57□□□□□ -0.08
UPF1-208ENST00000600012 FDPSP14324 419 aaKnown RBP14.57□□□□□ -0.08
UPF1-208ENST00000600012 CALML3P27482 149 aa14.57□□□□□ -0.08
UPF1-208ENST00000600012 HMGN5P82970 282 aaKnown RBP14.57□□□□□ -0.08
UPF1-208ENST00000600012 PURAQ00577 322 aaKnown RBP14.57□□□□□ -0.08
UPF1-208ENST00000600012 PDE4DQ08499 809 aa14.57□□□□□ -0.08
UPF1-208ENST00000600012 ZNF543Q08ER8 600 aa14.57□□□□□ -0.08
UPF1-208ENST00000600012 BRDTQ58F21 947 aaPredicted RBP14.57□□□□□ -0.08
UPF1-208ENST00000600012 TMTC3Q6ZXV5 915 aa14.57□□□□□ -0.08
UPF1-208ENST00000600012 STAG2Q8N3U4 1231 aa14.57□□□□□ -0.08
UPF1-208ENST00000600012 CCDC82Q8N4S0 544 aa14.57□□□□□ -0.08
UPF1-208ENST00000600012 FAM184AQ8NB25 1140 aa14.57□□□□□ -0.08
UPF1-208ENST00000600012 OR6J1Q8NGC5 347 aa14.57□□□□□ -0.08
UPF1-208ENST00000600012 CLEC4DQ8WXI8 215 aa14.57□□□□□ -0.08
UPF1-208ENST00000600012 SLC26A6Q9BXS9 759 aa14.57□□□□□ -0.08
UPF1-208ENST00000600012 PRDM6Q9NQX0 595 aa14.57□□□□□ -0.08
UPF1-208ENST00000600012 THEGQ9P2T0 379 aa14.57□□□□□ -0.08
UPF1-208ENST00000600012 ORC3Q9UBD5 711 aaPredicted RBP14.57□□□□□ -0.08
UPF1-208ENST00000600012 SLC4A7Q9Y6M7 1214 aa14.57□□□□□ -0.08
UPF1-208ENST00000600012 SCN5AQ14524 2016 aa14.57□□□□□ -0.08
UPF1-208ENST00000600012 NCOR1O75376 2440 aa14.57□□□□□ -0.08
UPF1-208ENST00000600012 CNTNAP5Q8WYK1 1306 aa14.57□□□□□ -0.08
UPF1-208ENST00000600012 TANC1Q9C0D5 1861 aa14.57□□□□□ -0.08
UPF1-208ENST00000600012 TCHHQ07283 1943 aa14.56□□□□□ -0.08
UPF1-208ENST00000600012 CCDC196A0A1B0GTZ2 297 aa14.56□□□□□ -0.08
UPF1-208ENST00000600012 MYL3P08590 195 aa14.56□□□□□ -0.08
UPF1-208ENST00000600012 SNHG28P0DPA3 235 aa14.56□□□□□ -0.08
UPF1-208ENST00000600012 IFNAR1P17181 557 aa14.56□□□□□ -0.08
UPF1-208ENST00000600012 SYT1P21579 422 aa14.56□□□□□ -0.08
UPF1-208ENST00000600012 KIF5BP33176 963 aa14.56□□□□□ -0.08
UPF1-208ENST00000600012 RPS6P62753 249 aaKnown RBP14.56□□□□□ -0.08
UPF1-208ENST00000600012 ADGRE1Q14246 886 aa14.56□□□□□ -0.08
UPF1-208ENST00000600012 PPP2R5BQ15173 497 aa14.56□□□□□ -0.08
UPF1-208ENST00000600012 FOXD4L5Q5VV16 416 aaPredicted RBP14.56□□□□□ -0.08
UPF1-208ENST00000600012 DNERQ8NFT8 737 aa14.56□□□□□ -0.08
UPF1-208ENST00000600012 SCFD2Q8WU76 684 aa14.56□□□□□ -0.08
UPF1-208ENST00000600012 ATXN2LQ8WWM7 1075 aaKnown RBP14.56□□□□□ -0.08
UPF1-208ENST00000600012 FOXD4L4Q8WXT5 416 aaPredicted RBP14.56□□□□□ -0.08
UPF1-208ENST00000600012 PPM1EQ8WY54 764 aa14.56□□□□□ -0.08
UPF1-208ENST00000600012 SCLYQ96I15 445 aa14.56□□□□□ -0.08
UPF1-208ENST00000600012 MAP3K14Q99558 947 aa14.56□□□□□ -0.08
UPF1-208ENST00000600012 MTG1Q9BT17 334 aaPredicted RBP14.56□□□□□ -0.08
UPF1-208ENST00000600012 TRMT13Q9NUP7 481 aaKnown RBP14.56□□□□□ -0.08
UPF1-208ENST00000600012 MAD2L2Q9UI95 211 aa14.56□□□□□ -0.08
UPF1-208ENST00000600012 YBX2Q9Y2T7 364 aaKnown RBP14.56□□□□□ -0.08
UPF1-208ENST00000600012 STK36Q9NRP7 1315 aa14.56□□□□□ -0.08
UPF1-208ENST00000600012 SPTBN5Q9NRC6 3674 aaKnown RBP14.55□□□□□ -0.08
UPF1-208ENST00000600012 VPS37CA5D8V6 355 aaPredicted RBP14.55□□□□□ -0.08
UPF1-208ENST00000600012 ZBBXA8MT70 800 aa14.55□□□□□ -0.08
UPF1-208ENST00000600012 B4DLN1 442 aa14.55□□□□□ -0.08
UPF1-208ENST00000600012 KPNA6O60684 536 aa14.55□□□□□ -0.08
UPF1-208ENST00000600012 PARP1P09874 1014 aaKnown RBP14.55□□□□□ -0.08
UPF1-208ENST00000600012 GOLGA8HP0CJ92 632 aa14.55□□□□□ -0.08
UPF1-208ENST00000600012 CYP2C9P11712 490 aa14.55□□□□□ -0.08
UPF1-208ENST00000600012 IGFBP4P22692 258 aa14.55□□□□□ -0.08
UPF1-208ENST00000600012 EDNRBP24530 442 aa14.55□□□□□ -0.08
UPF1-208ENST00000600012 MRPL12P52815 198 aaKnown RBP14.55□□□□□ -0.08
UPF1-208ENST00000600012 SSRP1Q08945 709 aaKnown RBP14.55□□□□□ -0.08
UPF1-208ENST00000600012 GPATCH4Q5T3I0 446 aaKnown RBP14.55□□□□□ -0.08
UPF1-208ENST00000600012 SRBD1Q8N5C6 995 aaKnown RBP14.55□□□□□ -0.08
UPF1-208ENST00000600012 ZDHHC9Q9Y397 364 aa14.55□□□□□ -0.08
UPF1-208ENST00000600012 PCDHA11Q9Y5I1 949 aa14.55□□□□□ -0.08
UPF1-208ENST00000600012 hCG_1642624A0A1W2PR95 340 aa14.54□□□□□ -0.08
UPF1-208ENST00000600012 PALM3A6NDB9 673 aaPredicted RBP14.54□□□□□ -0.08
UPF1-208ENST00000600012 STX6O43752 255 aa14.54□□□□□ -0.08
UPF1-208ENST00000600012 ATP2A2P16615 1042 aaKnown RBP14.54□□□□□ -0.08
UPF1-208ENST00000600012 NUCB2P80303 420 aa14.54□□□□□ -0.08
UPF1-208ENST00000600012 FUT2Q10981 343 aa14.54□□□□□ -0.08
UPF1-208ENST00000600012 FAM47CQ5HY64 1035 aa14.54□□□□□ -0.08
UPF1-208ENST00000600012 LARP1BQ659C4 914 aaKnown RBP14.54□□□□□ -0.08
UPF1-208ENST00000600012 PPP2R2DQ66LE6 453 aa14.54□□□□□ -0.08
UPF1-208ENST00000600012 NFRKBQ6P4R8 1299 aa14.54□□□□□ -0.08
UPF1-208ENST00000600012 VWCEQ96DN2 955 aa14.54□□□□□ -0.08
UPF1-208ENST00000600012 AIFM3Q96NN9 605 aa14.54□□□□□ -0.08
UPF1-208ENST00000600012 CPVLQ9H3G5 476 aa14.54□□□□□ -0.08
UPF1-208ENST00000600012 KIAA1217Q5T5P2 1943 aa14.54□□□□□ -0.08
UPF1-208ENST00000600012 TRIP12Q14669 1992 aaPredicted RBP14.54□□□□□ -0.08
UPF1-208ENST00000600012 CHD9Q3L8U1 2897 aa14.53□□□□□ -0.08
UPF1-208ENST00000600012 A6NJR5 290 aa14.53□□□□□ -0.08
UPF1-208ENST00000600012 TNFRSF10AO00220 468 aa14.53□□□□□ -0.08
UPF1-208ENST00000600012 BRD1O95696 1058 aa14.53□□□□□ -0.08
UPF1-208ENST00000600012 PDCP20941 246 aa14.53□□□□□ -0.08
UPF1-208ENST00000600012 RFC2P35250 354 aa14.53□□□□□ -0.08
UPF1-208ENST00000600012 RABGGTBP53611 331 aa14.53□□□□□ -0.08
UPF1-208ENST00000600012 GUCY1B3Q02153 619 aa14.53□□□□□ -0.08
UPF1-208ENST00000600012 PTPN11Q06124 597 aaPredicted RBP14.53□□□□□ -0.08
UPF1-208ENST00000600012 TTLL4Q14679 1199 aa14.53□□□□□ -0.08
UPF1-208ENST00000600012 SLC35G1Q2M3R5 365 aa14.53□□□□□ -0.08
UPF1-208ENST00000600012 NBPF20Q3BBV1 942 aa14.53□□□□□ -0.08
UPF1-208ENST00000600012 ASPRV1Q53RT3 343 aa14.53□□□□□ -0.08
UPF1-208ENST00000600012 TRIM22Q8IYM9 498 aa14.53□□□□□ -0.08
UPF1-208ENST00000600012 RGS22Q8NE09 1264 aa14.53□□□□□ -0.08
UPF1-208ENST00000600012 PIBF1Q8WXW3 757 aa14.53□□□□□ -0.08
UPF1-208ENST00000600012 ASB2Q96Q27 587 aa14.53□□□□□ -0.08
UPF1-208ENST00000600012 ALG1Q9BT22 464 aa14.53□□□□□ -0.08
UPF1-208ENST00000600012 RNF26Q9BY78 433 aaPredicted RBP14.53□□□□□ -0.08
UPF1-208ENST00000600012 MAF1Q9H063 256 aa14.53□□□□□ -0.08
UPF1-208ENST00000600012 MTMR6Q9Y217 621 aa14.53□□□□□ -0.08
UPF1-208ENST00000600012 KIF3AQ9Y496 699 aa14.53□□□□□ -0.08
UPF1-208ENST00000600012 TET1Q8NFU7 2136 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms