RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 MYSM1Q5VVJ2 828 aa22.32■■□□□ 1.16
SHKBP1-221ENST00000599833 REXO1Q8N1G1 1221 aaKnown RBP22.32■■□□□ 1.16
SHKBP1-221ENST00000599833 CYP2W1Q8TAV3 490 aa22.32■■□□□ 1.16
SHKBP1-221ENST00000599833 ZSCAN31Q96LW9 406 aaPredicted RBP22.32■■□□□ 1.16
SHKBP1-221ENST00000599833 HTATIP2Q9BUP3 242 aa22.32■■□□□ 1.16
SHKBP1-221ENST00000599833 AP5M1Q9H0R1 490 aa22.32■■□□□ 1.16
SHKBP1-221ENST00000599833 SPC25Q9HBM1 224 aa22.32■■□□□ 1.16
SHKBP1-221ENST00000599833 SH2B1Q9NRF2 756 aaPredicted RBP22.32■■□□□ 1.16
SHKBP1-221ENST00000599833 PCDHA4Q9UN74 947 aa22.32■■□□□ 1.16
SHKBP1-221ENST00000599833 KCNJ14Q9UNX9 436 aa22.32■■□□□ 1.16
SHKBP1-221ENST00000599833 TELO2Q9Y4R8 837 aa22.32■■□□□ 1.16
SHKBP1-221ENST00000599833 ATP9AO75110 1047 aa22.31■■□□□ 1.16
SHKBP1-221ENST00000599833 GH1P01241 217 aa22.31■■□□□ 1.16
SHKBP1-221ENST00000599833 HOXD8P13378 290 aaPredicted RBP22.31■■□□□ 1.16
SHKBP1-221ENST00000599833 ATN1P54259 1190 aaPredicted RBP22.31■■□□□ 1.16
SHKBP1-221ENST00000599833 PURAQ00577 322 aaKnown RBP22.31■■□□□ 1.16
SHKBP1-221ENST00000599833 CELF3Q5SZQ8 465 aaKnown RBP22.31■■□□□ 1.16
SHKBP1-221ENST00000599833 PCSK9Q8NBP7 692 aaKnown RBP22.31■■□□□ 1.16
SHKBP1-221ENST00000599833 IL27Q8NEV9 243 aa22.31■■□□□ 1.16
SHKBP1-221ENST00000599833 LAMA3Q16787 3333 aa22.3■■□□□ 1.16
SHKBP1-221ENST00000599833 IGLV3-22A0A075B6J6 115 aa22.3■■□□□ 1.16
SHKBP1-221ENST00000599833 FIBPO43427 364 aa22.3■■□□□ 1.16
SHKBP1-221ENST00000599833 CYP3A4P08684 503 aa22.3■■□□□ 1.16
SHKBP1-221ENST00000599833 KCNA2P16389 499 aa22.3■■□□□ 1.16
SHKBP1-221ENST00000599833 CDK7P50613 346 aa22.3■■□□□ 1.16
SHKBP1-221ENST00000599833 ARHGAP4P98171 946 aa22.3■■□□□ 1.16
SHKBP1-221ENST00000599833 KCNV1Q6PIU1 500 aa22.3■■□□□ 1.16
SHKBP1-221ENST00000599833 CXCL17Q6UXB2 119 aa22.3■■□□□ 1.16
SHKBP1-221ENST00000599833 SLC43A3Q8NBI5 491 aa22.3■■□□□ 1.16
SHKBP1-221ENST00000599833 AFG1LQ8WV93 481 aa22.3■■□□□ 1.16
SHKBP1-221ENST00000599833 GPRASP2Q96D09 838 aa22.3■■□□□ 1.16
SHKBP1-221ENST00000599833 JADE2Q9NQC1 790 aa22.3■■□□□ 1.16
SHKBP1-221ENST00000599833 PCDH10Q9P2E7 1040 aa22.3■■□□□ 1.16
SHKBP1-221ENST00000599833 FAM86B1E9PN63 330 aa22.29■■□□□ 1.16
SHKBP1-221ENST00000599833 MMP3P08254 477 aa22.29■■□□□ 1.16
SHKBP1-221ENST00000599833 FAM86B2P0C5J1 330 aa22.29■■□□□ 1.16
SHKBP1-221ENST00000599833 NLRP5P59047 1200 aa22.29■■□□□ 1.16
SHKBP1-221ENST00000599833 HSDL1Q3SXM5 330 aa22.29■■□□□ 1.16
SHKBP1-221ENST00000599833 GNPTABQ3T906 1256 aa22.29■■□□□ 1.16
SHKBP1-221ENST00000599833 BLIDQ8IZY5 108 aa22.29■■□□□ 1.16
SHKBP1-221ENST00000599833 OXER1Q8TDS5 423 aa22.29■■□□□ 1.16
SHKBP1-221ENST00000599833 TNFRSF25Q93038 417 aa22.29■■□□□ 1.16
SHKBP1-221ENST00000599833 MXRA8Q9BRK3 442 aa22.29■■□□□ 1.16
SHKBP1-221ENST00000599833 LLPHQ9BRT6 129 aaKnown RBP22.29■■□□□ 1.16
SHKBP1-221ENST00000599833 ALG1Q9BT22 464 aa22.29■■□□□ 1.16
SHKBP1-221ENST00000599833 LTBP2Q14767 1821 aa22.29■■□□□ 1.16
SHKBP1-221ENST00000599833 ELP1O95163 1332 aa22.29■■□□□ 1.16
SHKBP1-221ENST00000599833 MEIS1O00470 390 aa22.28■■□□□ 1.16
SHKBP1-221ENST00000599833 ST18O60284 1047 aa22.28■■□□□ 1.16
SHKBP1-221ENST00000599833 GGPS1O95749 300 aa22.28■■□□□ 1.16
SHKBP1-221ENST00000599833 CPT1AP50416 773 aa22.28■■□□□ 1.16
SHKBP1-221ENST00000599833 RTP1P59025 263 aa22.28■■□□□ 1.16
SHKBP1-221ENST00000599833 MCTP2Q6DN12 878 aa22.28■■□□□ 1.16
SHKBP1-221ENST00000599833 PPTC7Q8NI37 304 aa22.28■■□□□ 1.16
SHKBP1-221ENST00000599833 BICD2Q8TD16 824 aa22.28■■□□□ 1.16
SHKBP1-221ENST00000599833 LENG9Q96B70 501 aa22.28■■□□□ 1.16
SHKBP1-221ENST00000599833 TMX3Q96JJ7 454 aa22.28■■□□□ 1.16
SHKBP1-221ENST00000599833 SENP7Q9BQF6 1050 aa22.28■■□□□ 1.16
SHKBP1-221ENST00000599833 CIITAP33076 1130 aa22.27■■□□□ 1.16
SHKBP1-221ENST00000599833 LAMC2Q13753 1193 aa22.27■■□□□ 1.16
SHKBP1-221ENST00000599833 TRIM60Q495X7 471 aa22.27■■□□□ 1.16
SHKBP1-221ENST00000599833 CEP55Q53EZ4 464 aa22.27■■□□□ 1.16
SHKBP1-221ENST00000599833 GALNT17Q6IS24 598 aa22.27■■□□□ 1.16
SHKBP1-221ENST00000599833 KAT2BQ92831 832 aa22.27■■□□□ 1.16
SHKBP1-221ENST00000599833 EHMT1Q9H9B1 1298 aa22.27■■□□□ 1.16
SHKBP1-221ENST00000599833 STARD7Q9NQZ5 370 aa22.27■■□□□ 1.16
SHKBP1-221ENST00000599833 SORBS3O60504 671 aa22.26■■□□□ 1.15
SHKBP1-221ENST00000599833 ARP10275 920 aa22.26■■□□□ 1.15
SHKBP1-221ENST00000599833 PSMC6P62333 389 aa22.26■■□□□ 1.15
SHKBP1-221ENST00000599833 EARS2Q5JPH6 523 aaKnown RBP22.26■■□□□ 1.15
SHKBP1-221ENST00000599833 NIPA1Q7RTP0 329 aa22.26■■□□□ 1.15
SHKBP1-221ENST00000599833 ANKRD33Q7Z3H0 272 aa22.26■■□□□ 1.15
SHKBP1-221ENST00000599833 NLRX1Q86UT6 975 aa22.26■■□□□ 1.15
SHKBP1-221ENST00000599833 DHX37Q8IY37 1157 aaKnown RBP22.26■■□□□ 1.15
SHKBP1-221ENST00000599833 DPF3Q92784 378 aa22.26■■□□□ 1.15
SHKBP1-221ENST00000599833 GLT1D1Q96MS3 346 aa22.26■■□□□ 1.15
SHKBP1-221ENST00000599833 KCNH7Q9NS40 1196 aa22.26■■□□□ 1.15
SHKBP1-221ENST00000599833 EVI5O60447 810 aa22.25■■□□□ 1.15
SHKBP1-221ENST00000599833 ITGB3BPQ13352 177 aaPredicted RBP22.25■■□□□ 1.15
SHKBP1-221ENST00000599833 MTMR1Q13613 665 aa22.25■■□□□ 1.15
SHKBP1-221ENST00000599833 METTL7BQ6UX53 244 aa22.25■■□□□ 1.15
SHKBP1-221ENST00000599833 CYFIP1Q7L576 1253 aa22.25■■□□□ 1.15
SHKBP1-221ENST00000599833 C7orf61Q8IZ16 206 aa22.25■■□□□ 1.15
SHKBP1-221ENST00000599833 WASF1Q92558 559 aa22.25■■□□□ 1.15
SHKBP1-221ENST00000599833 POLR3EQ9NVU0 708 aa22.25■■□□□ 1.15
SHKBP1-221ENST00000599833 H0YGN5 161 aa22.24■■□□□ 1.15
SHKBP1-221ENST00000599833 MAFGO15525 162 aa22.24■■□□□ 1.15
SHKBP1-221ENST00000599833 ZEB2O60315 1214 aa22.24■■□□□ 1.15
SHKBP1-221ENST00000599833 CABYRO75952 493 aa22.24■■□□□ 1.15
SHKBP1-221ENST00000599833 MBOAT7Q96N66 472 aa22.24■■□□□ 1.15
SHKBP1-221ENST00000599833 GPR20Q99678 358 aa22.24■■□□□ 1.15
SHKBP1-221ENST00000599833 AGO4Q9HCK5 861 aaKnown RBP22.24■■□□□ 1.15
SHKBP1-221ENST00000599833 A0A0U1RQG5 324 aaPredicted RBP22.23■■□□□ 1.15
SHKBP1-221ENST00000599833 ARVCFO00192 962 aa22.23■■□□□ 1.15
SHKBP1-221ENST00000599833 HAS3O00219 553 aa22.23■■□□□ 1.15
SHKBP1-221ENST00000599833 DHX15O43143 795 aaKnown RBP22.23■■□□□ 1.15
SHKBP1-221ENST00000599833 MYL3P08590 195 aa22.23■■□□□ 1.15
SHKBP1-221ENST00000599833 TLE2Q04725 743 aa22.23■■□□□ 1.15
SHKBP1-221ENST00000599833 NEDD9Q14511 834 aa22.23■■□□□ 1.15
SHKBP1-221ENST00000599833 KRT40Q6A162 431 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms