RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 NKRFO15226 690 aaKnown RBP eCLIP10.12□□□□□ -0.79
SHKBP1-220ENST00000599716 DHX16O60231 1041 aaKnown RBP10.12□□□□□ -0.79
SHKBP1-220ENST00000599716 KDM4AO75164 1064 aa10.12□□□□□ -0.79
SHKBP1-220ENST00000599716 RRP1P56182 461 aaKnown RBP10.12□□□□□ -0.79
SHKBP1-220ENST00000599716 MBTPS1Q14703 1052 aa10.12□□□□□ -0.79
SHKBP1-220ENST00000599716 QRICH1Q2TAL8 776 aa10.12□□□□□ -0.79
SHKBP1-220ENST00000599716 BRDTQ58F21 947 aaPredicted RBP10.12□□□□□ -0.79
SHKBP1-220ENST00000599716 POTEBQ6S5H4 581 aa10.12□□□□□ -0.79
SHKBP1-220ENST00000599716 LRRC8DQ7L1W4 858 aa10.12□□□□□ -0.79
SHKBP1-220ENST00000599716 PNMA1Q8ND90 353 aa10.12□□□□□ -0.79
SHKBP1-220ENST00000599716 DNERQ8NFT8 737 aa10.12□□□□□ -0.79
SHKBP1-220ENST00000599716 GPKOWQ92917 476 aaPredicted RBP eCLIP10.12□□□□□ -0.79
SHKBP1-220ENST00000599716 RMDN3Q96TC7 470 aa10.12□□□□□ -0.79
SHKBP1-220ENST00000599716 SEZ6LQ9BYH1 1024 aa10.12□□□□□ -0.79
SHKBP1-220ENST00000599716 OSBPL7Q9BZF2 842 aa10.12□□□□□ -0.79
SHKBP1-220ENST00000599716 HDAC6Q9UBN7 1215 aa10.12□□□□□ -0.79
SHKBP1-220ENST00000599716 ZBTB47Q9UFB7 747 aaPredicted RBP10.12□□□□□ -0.79
SHKBP1-220ENST00000599716 BAZ2BQ9UIF8 2168 aaKnown RBP10.11□□□□□ -0.79
SHKBP1-220ENST00000599716 OPLAHO14841 1288 aa10.11□□□□□ -0.79
SHKBP1-220ENST00000599716 CFBP00751 764 aa10.11□□□□□ -0.79
SHKBP1-220ENST00000599716 GH1P01241 217 aa10.11□□□□□ -0.79
SHKBP1-220ENST00000599716 CKBP12277 381 aa10.11□□□□□ -0.79
SHKBP1-220ENST00000599716 RFC2P35250 354 aa10.11□□□□□ -0.79
SHKBP1-220ENST00000599716 KCNJ6P48051 423 aa10.11□□□□□ -0.79
SHKBP1-220ENST00000599716 PSEN2P49810 448 aa10.11□□□□□ -0.79
SHKBP1-220ENST00000599716 BFSP2Q13515 415 aa10.11□□□□□ -0.79
SHKBP1-220ENST00000599716 CWC27Q6UX04 472 aaKnown RBP10.11□□□□□ -0.79
SHKBP1-220ENST00000599716 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.11□□□□□ -0.79
SHKBP1-220ENST00000599716 STAG2Q8N3U4 1231 aa10.11□□□□□ -0.79
SHKBP1-220ENST00000599716 IL31RAQ8NI17 732 aa10.11□□□□□ -0.79
SHKBP1-220ENST00000599716 ANKS1AQ92625 1134 aa10.11□□□□□ -0.79
SHKBP1-220ENST00000599716 ZBED2Q9BTP6 218 aa10.11□□□□□ -0.79
SHKBP1-220ENST00000599716 IL25Q9H293 177 aa10.11□□□□□ -0.79
SHKBP1-220ENST00000599716 BCAS3Q9H6U6 928 aa10.11□□□□□ -0.79
SHKBP1-220ENST00000599716 LAMA4Q16363 1823 aa10.11□□□□□ -0.79
SHKBP1-220ENST00000599716 FRYLO94915 3013 aa10.11□□□□□ -0.79
SHKBP1-220ENST00000599716 MYO7AQ13402 2215 aa10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 KIF28PB7ZC32 967 aa10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 KPNA6O60684 536 aa10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 PPP1R11O60927 126 aaPredicted RBP10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 MYCLP12524 364 aaPredicted RBP10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 SELPP16109 830 aa10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 SDSP20132 328 aa10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 HOXA13P31271 388 aaPredicted RBP10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 ID4P47928 161 aa10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 PTPN11Q06124 597 aaPredicted RBP10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 KIAA0753Q2KHM9 967 aa10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 ZNF618Q5T7W0 954 aa10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 ARHGEF16Q5VV41 709 aa10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 TRAF7Q6Q0C0 670 aa10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 C7orf31Q8N865 590 aa10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 ENAHQ8N8S7 591 aaPredicted RBP10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 PHOSPHO2Q8TCD6 241 aa10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 ESR2Q92731 530 aa10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 TTC14Q96N46 770 aa10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 C17orf80Q9BSJ5 609 aa10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 KAT14Q9H8E8 782 aa10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 JMJD4Q9H9V9 463 aa10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 SUGCTQ9HAC7 445 aa10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 GTF2IRD1Q9UHL9 959 aa10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 DDX41Q9UJV9 622 aaKnown RBP10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 TELO2Q9Y4R8 837 aa10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 MRVI1Q9Y6F6 885 aa10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 DOCK5Q9H7D0 1870 aa10.1□□□□□ -0.79
SHKBP1-220ENST00000599716 ABCB11O95342 1321 aa10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 ZMYM6O95789 1325 aa10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 LOC102724159A0A0B4J2E5 919 aa10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 LINC01553A4QN01 128 aa10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 ZNF213O14771 459 aa10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 BAIAP3O94812 1187 aa10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 NR3C2P08235 984 aa10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 CASTP20810 708 aaKnown RBP10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 SP2Q02086 613 aa10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 TCF15Q12870 199 aa10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 MFSD10Q14728 455 aa10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 PWP2Q15269 919 aaKnown RBP10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 STXBP2Q15833 593 aa10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 SLC35G1Q2M3R5 365 aa10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 TRIM71Q2Q1W2 868 aaKnown RBP10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 HSDL1Q3SXM5 330 aa10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 GPATCH4Q5T3I0 446 aaKnown RBP10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 CNKSR3Q6P9H4 555 aa10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 FBXO11Q86XK2 927 aa10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 PIP4P2Q8N4L2 257 aa10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 CAGE1Q8TC20 777 aa10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 NSUN6Q8TEA1 469 aaKnown RBP10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 AFAP1L1Q8TED9 768 aa10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 ZSCAN10Q96SZ4 725 aaPredicted RBP10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 MPHOSPH6Q99547 160 aaKnown RBP10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 PXMP2Q9NR77 195 aa10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 ZSWIM5Q9P217 1185 aa10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 SUPT16HQ9Y5B9 1047 aaKnown RBP10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 ASPMQ8IZT6 3477 aa10.09□□□□□ -0.79
SHKBP1-220ENST00000599716 SIP14410 1827 aa10.08□□□□□ -0.8
SHKBP1-220ENST00000599716 CSPG5O95196 566 aa10.08□□□□□ -0.8
SHKBP1-220ENST00000599716 GJB5O95377 273 aa10.08□□□□□ -0.8
SHKBP1-220ENST00000599716 IGHDP01880 384 aa10.08□□□□□ -0.8
SHKBP1-220ENST00000599716 CXCL10P02778 98 aa10.08□□□□□ -0.8
SHKBP1-220ENST00000599716 CTSHP09668 335 aa10.08□□□□□ -0.8
SHKBP1-220ENST00000599716 PKN1Q16512 942 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms